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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 310 |
| Acc36I | ACCTGC | 2 cut(s) | 310, 438 |
| AciI | CCGC | 2 cut(s) | 422, 560 |
| AclWI | GGATC | 1 cut(s) | 206 |
| AcsI | RAATTY | 1 cut(s) | 305 |
| AcuI | CTGAAG | 1 cut(s) | 410 |
| AcyI | GRCGYC | 1 cut(s) | 385 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AgsI | TTSAA | 1 cut(s) | 202 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 279 |
| AjnI | CCWGG | 1 cut(s) | 426 |
| AluBI | AGCT | 4 cut(s) | 125, 172, 470, 503 |
| AluI | AGCT | 4 cut(s) | 125, 172, 470, 503 |
| Alw26I | GTCTC | 2 cut(s) | 73, 582 |
| AlwI | GGATC | 1 cut(s) | 206 |
| Ama87I | CYCGRG | 1 cut(s) | 70 |
| ApeKI | GCWGC | 1 cut(s) | 509 |
| ApoI | RAATTY | 1 cut(s) | 305 |
| AspS9I | GGNCC | 1 cut(s) | 424 |
| AsuHPI | GGTGA | 4 cut(s) | 187, 334, 606, 617 |
| AvaI | CYCGRG | 1 cut(s) | 70 |
| AvaII | GGWCC | 1 cut(s) | 424 |
| BbsI | GAAGAC | 1 cut(s) | 172 |
| BbvCI | CCTCAGC | 1 cut(s) | 513 |
| BbvI | GCAGC | 1 cut(s) | 496 |
| BccI | CCATC | 3 cut(s) | 10, 154, 172 |
| BciT130I | CCWGG | 1 cut(s) | 428 |
| BcoDI | GTCTC | 2 cut(s) | 73, 582 |
| BfaI | CTAG | 2 cut(s) | 126, 351 |
| BfuAI | ACCTGC | 2 cut(s) | 310, 438 |
| BisI | GCNGC | 2 cut(s) | 510, 561 |
| BlsI | GCNGC | 2 cut(s) | 511, 562 |
| Bme1390I | CCNGG | 1 cut(s) | 428 |
| Bme18I | GGWCC | 1 cut(s) | 424 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 279 |
| BmeT110I | CYCGRG | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 424 |
| BmiI | GGNNCC | 2 cut(s) | 183, 564 |
| BmrFI | CCNGG | 1 cut(s) | 428 |
| BpiI | GAAGAC | 1 cut(s) | 172 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 53, 85 |
| Bpu10I | CCTNAGC | 1 cut(s) | 513 |
| BsaHI | GRCGYC | 1 cut(s) | 385 |
| BsaWI | WCCGGW | 1 cut(s) | 580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 11, 41 |
| Bse1I | ACTGG | 3 cut(s) | 185, 266, 280 |
| BseBI | CCWGG | 1 cut(s) | 428 |
| BseGI | GGATG | 2 cut(s) | 241, 523 |
| BseMII | CTCAG | 2 cut(s) | 242, 504 |
| BseNI | ACTGG | 3 cut(s) | 185, 266, 280 |
| BseRI | GAGGAG | 1 cut(s) | 472 |
| BseXI | GCAGC | 1 cut(s) | 496 |
| BsiHKCI | CYCGRG | 1 cut(s) | 70 |
| BsiSI | CCGG | 1 cut(s) | 581 |
| BslFI | GGGAC | 1 cut(s) | 109 |
| BsmAI | GTCTC | 2 cut(s) | 73, 582 |
| BsmFI | GGGAC | 1 cut(s) | 109 |
| BsoBI | CYCGRG | 1 cut(s) | 70 |
| Bsp143I | GATC | 1 cut(s) | 211 |
| BspACI | CCGC | 2 cut(s) | 422, 560 |
| BspCNI | CTCAG | 2 cut(s) | 241, 505 |
| BspHI | TCATGA | 1 cut(s) | 208 |
| BspLI | GGNNCC | 2 cut(s) | 183, 564 |
| BspMI | ACCTGC | 2 cut(s) | 310, 438 |
| BspPI | GGATC | 1 cut(s) | 206 |
| BsrI | ACTGG | 3 cut(s) | 185, 266, 280 |
| BssMI | GATC | 1 cut(s) | 211 |
| BssNI | GRCGYC | 1 cut(s) | 385 |
| Bst2UI | CCWGG | 1 cut(s) | 428 |
| Bst4CI | ACNGT | 1 cut(s) | 198 |
| Bst6I | CTCTTC | 2 cut(s) | 426, 549 |
| BstACI | GRCGYC | 1 cut(s) | 385 |
| BstDEI | CTNAG | 2 cut(s) | 228, 513 |
| BstF5I | GGATG | 2 cut(s) | 241, 523 |
| BstKTI | GATC | 1 cut(s) | 214 |
| BstMAI | GTCTC | 2 cut(s) | 73, 582 |
| BstMBI | GATC | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 509 |
| BstNI | CCWGG | 1 cut(s) | 428 |
| BstSCI | CCNGG | 1 cut(s) | 426 |
| BstV1I | GCAGC | 1 cut(s) | 496 |
| BstV2I | GAAGAC | 1 cut(s) | 172 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 160 |
| BtsCI | GGATG | 2 cut(s) | 241, 523 |
| BveI | ACCTGC | 2 cut(s) | 310, 438 |
| CciI | TCATGA | 1 cut(s) | 208 |
| Cfr13I | GGNCC | 1 cut(s) | 424 |
| CseI | GACGC | 1 cut(s) | 374 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CviAII | CATG | 3 cut(s) | 209, 316, 530 |
| CviQI | GTAC | 1 cut(s) | 42 |
| DdeI | CTNAG | 2 cut(s) | 228, 513 |
| DpnI | GATC | 1 cut(s) | 213 |
| DpnII | GATC | 1 cut(s) | 211 |
| DriI | GACNNNNNGTC | 1 cut(s) | 279 |
| Eam1104I | CTCTTC | 2 cut(s) | 426, 549 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 279 |
| EarI | CTCTTC | 2 cut(s) | 426, 549 |
| Eco47I | GGWCC | 1 cut(s) | 424 |
| Eco57I | CTGAAG | 1 cut(s) | 410 |
| Eco88I | CYCGRG | 1 cut(s) | 70 |
| EcoRII | CCWGG | 1 cut(s) | 426 |
| FaeI | CATG | 3 cut(s) | 212, 319, 533 |
| FaiI | YATR | 6 cut(s) | 50, 103, 210, 317, 453, 531 |
| FaqI | GGGAC | 1 cut(s) | 109 |
| FatI | CATG | 3 cut(s) | 208, 315, 529 |
| Fnu4HI | GCNGC | 2 cut(s) | 510, 561 |
| FokI | GGATG | 2 cut(s) | 248, 530 |
| Fsp4HI | GCNGC | 2 cut(s) | 510, 561 |
| FspBI | CTAG | 2 cut(s) | 126, 351 |
| GluI | GCNGC | 2 cut(s) | 510, 561 |
| HapII | CCGG | 1 cut(s) | 581 |
| HgaI | GACGC | 1 cut(s) | 374 |
| Hin1I | GRCGYC | 1 cut(s) | 385 |
| Hin1II | CATG | 3 cut(s) | 212, 319, 533 |
| HindIII | AAGCTT | 1 cut(s) | 468 |
| HinfI | GANTC | 5 cut(s) | 26, 262, 442, 482, 575 |
| HpaII | CCGG | 1 cut(s) | 581 |
| HphI | GGTGA | 4 cut(s) | 187, 334, 606, 617 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 285, 390 |
| Hpy188III | TCNNGA | 2 cut(s) | 30, 209 |
| HpyAV | CCTTC | 3 cut(s) | 385, 596, 627 |
| HpyCH4III | ACNGT | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 3 cut(s) | 319, 529, 587 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 509 |
| HpyF3I | CTNAG | 2 cut(s) | 228, 513 |
| Hsp92I | GRCGYC | 1 cut(s) | 385 |
| Hsp92II | CATG | 3 cut(s) | 212, 319, 533 |
| Kzo9I | GATC | 1 cut(s) | 211 |
| LmnI | GCTCC | 2 cut(s) | 181, 568 |
| Lsp1109I | GCAGC | 1 cut(s) | 496 |
| MaeI | CTAG | 2 cut(s) | 126, 351 |
| MalI | GATC | 1 cut(s) | 213 |
| MboI | GATC | 1 cut(s) | 211 |
| MboII | GAAGA | 9 cut(s) | 177, 303, 382, 385, 388, 443, 448, 451, 566 |
| MluCI | AATT | 1 cut(s) | 305 |
| MlyI | GAGTC | 4 cut(s) | 35, 271, 476, 584 |
| MmeI | TCCRAC | 1 cut(s) | 263 |
| MseI | TTAA | 4 cut(s) | 362, 411, 632, 637 |
| MslI | CAYNNNNRTG | 1 cut(s) | 320 |
| MspA1I | CMGCKG | 2 cut(s) | 172, 422 |
| MspI | CCGG | 1 cut(s) | 581 |
| MspR9I | CCNGG | 1 cut(s) | 428 |
| MvaI | CCWGG | 1 cut(s) | 428 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 509 |
| NdeII | GATC | 1 cut(s) | 211 |
| NlaIII | CATG | 3 cut(s) | 212, 319, 533 |
| NlaIV | GGNNCC | 2 cut(s) | 183, 564 |
| PagI | TCATGA | 1 cut(s) | 208 |
| PaqCI | CACCTGC | 1 cut(s) | 310 |
| PfeI | GAWTC | 1 cut(s) | 442 |
| PkrI | GCNGC | 2 cut(s) | 511, 562 |
| PleI | GAGTC | 4 cut(s) | 34, 270, 476, 583 |
| PpsI | GAGTC | 4 cut(s) | 34, 270, 476, 583 |
| Psp6I | CCWGG | 1 cut(s) | 426 |
| PspGI | CCWGG | 1 cut(s) | 426 |
| PspN4I | GGNNCC | 2 cut(s) | 183, 564 |
| PspPI | GGNCC | 1 cut(s) | 424 |
| PvuII | CAGCTG | 1 cut(s) | 172 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| RseI | CAYNNNNRTG | 1 cut(s) | 320 |
| SaqAI | TTAA | 4 cut(s) | 362, 411, 632, 637 |
| SatI | GCNGC | 2 cut(s) | 510, 561 |
| Sau3AI | GATC | 1 cut(s) | 211 |
| Sau96I | GGNCC | 1 cut(s) | 424 |
| SchI | GAGTC | 4 cut(s) | 35, 271, 476, 584 |
| ScrFI | CCNGG | 1 cut(s) | 428 |
| SinI | GGWCC | 1 cut(s) | 424 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 320 |
| Sse9I | AATT | 1 cut(s) | 305 |
| SsiI | CCGC | 2 cut(s) | 422, 560 |
| SspI | AATATT | 1 cut(s) | 295 |
| SspMI | CTAG | 2 cut(s) | 126, 351 |
| StyD4I | CCNGG | 1 cut(s) | 426 |
| TaaI | ACNGT | 1 cut(s) | 198 |
| TaqI | TCGA | 1 cut(s) | 245 |
| TasI | AATT | 1 cut(s) | 305 |
| TauI | GCSGC | 1 cut(s) | 563 |
| TfiI | GAWTC | 1 cut(s) | 442 |
| Tru1I | TTAA | 4 cut(s) | 362, 411, 632, 637 |
| Tru9I | TTAA | 4 cut(s) | 362, 411, 632, 637 |
| TseI | GCWGC | 1 cut(s) | 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 424 |
| XapI | RAATTY | 1 cut(s) | 305 |
| XspI | CTAG | 2 cut(s) | 126, 351 |