Rmu_sc0002112.1_g000014

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002112.1
OG0000049
Physical Location & Seq
Forward (+)
43801 .. 45276
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002112.1_g000014.1.cds

Sequence Viewer

Length: 1476 bp
atggctgaaggcctaatggattcgaacttgccattgatcaattcagactcatccttggttgcactgggggctgcggctattcaggtagaccaatggcttctggttggacgcttgttggccccaaaagccagtctgccagggttcaagggaactatatcgacgatatggaggctcagatcgggccttaccatccaagacgcaggtgagcgttttgtgtttcaatttgaaactgaggcaatgcgtaatcgtattttacatgggggtccttggttttaccgtaacactatgttggtggtgggagattatgatggtctcagcccgatcgaagaggtgccactgaacatgatggaatcatgggtggtggtgaaaggactgccgtttggactgagaaacaagaaggcgcttgctttgattggagcgtccttgggattgatggttcgagtggatcagaatgcagtgcagcggagagaggccgaacagaggatcaaggttgtgttcgatgttcgtcgtcgggtacgtacctggaaggtgtttgaattttctccaatggtgaaaccggagttgaccttcatctatgagaaggttaagggtttctgtcgtgattgtgggctgttcacccatgatgcacttggttgtgataagcttctcaccaaagagaaagaggagatgcagactgtttcgtccgtgtctgctatggcgggtctatctttggcttcggtggtagcggctagttttgtcccatcgttaccaggacgtgttgttgagaaggtaagcgggaatcgtaagagtgataccactctagttattttggagactgcttcgggttcttcaggtgagggggcaattagtactgggaagagtggtcgtgcagtgttgccctttggttccaagatgatggggagtcctattattttggaccacactttggctaatttcaaacatgcgagcttcttgcaaccttgtatgccacttcctcttgtccagggggaggtaagttctgagcagctagtattggcttctggtccaactgtgcctagaaagacttctgctcttgtggagtttacatccatgcaagtggaacagctagggaagaaaagaaaggctgtggcgtgtttagaccactttggaaagaaatatttggctttgccggattcaattgaggttgaggagaatgtttctttgattctgcaacataagaatggcaagtttttgatctcaccaaagaagaagaaactagggcgtccgcagggaagcaagaatagaatgaaagccttggatgaacaggaagtgaaaaagattcgcaaatataagcgtcgtgggaaagctttgggatttgattcaaagcttgatgttaatgcgtctgaagtgactagtgtgcatgtgggggagagtgaggcaactctgctgaaggagtctactactgcagaggtttcggtagaaggtgatgcgtcactttctaccaatagtctagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

491

Amino Acids

53.65

Weight (kDa)

9.43

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 191
AasI GACNNNNNNGTC 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 925
AccI GTMKAC 2 cut(s) 87, 1415
AciI CCGC 6 cut(s) 74, 463, 698, 725, 774, 1244
AclWI GGATC 2 cut(s) 453, 491
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 4 cut(s) 27, 813, 1383, 1427
AcyI GRCGYC 1 cut(s) 1240
AfaI GTAC 3 cut(s) 516, 520, 850
AfiI CCNNNNNNNGG 3 cut(s) 480, 925, 988
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 7 cut(s) 145, 221, 227, 536, 937, 1155, 1341
AhlI ACTAGT 1 cut(s) 1370
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 4 cut(s) 136, 521, 748, 981
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 6 cut(s) 643, 948, 1006, 1084, 1325, 1345
AluI AGCT 6 cut(s) 643, 948, 1006, 1084, 1325, 1345
Alw26I GTCTC 2 cut(s) 317, 806
AlwI GGATC 2 cut(s) 453, 491
AoxI GGCC 4 cut(s) 10, 117, 181, 471
ApeKI GCWGC 3 cut(s) 71, 460, 1003
ApoI RAATTY 1 cut(s) 536
Asp700I GAANNNNTTC 1 cut(s) 1042
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 5 cut(s) 118, 181, 263, 916, 1022
AsuHPI GGTGA 8 cut(s) 215, 376, 562, 607, 640, 845, 1209, 1454
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 3 cut(s) 263, 916, 1022
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 58, 472, 1015
BccI CCATC 6 cut(s) 197, 302, 340, 427, 748, 889
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 4 cut(s) 934, 968, 1413, 1447
BciT130I CCWGG 4 cut(s) 138, 523, 750, 983
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 317, 806
BcuI ACTAGT 1 cut(s) 1370
BfaI CTAG 8 cut(s) 729, 800, 1007, 1035, 1085, 1235, 1371, 1469
BfmI CTRYAG 1 cut(s) 1422
BfoI RGCGCY 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 5 cut(s) 72, 75, 461, 726, 1004
BlsI GCNGC 5 cut(s) 73, 76, 462, 727, 1005
BmcAI AGTACT 1 cut(s) 850
Bme1390I CCNGG 4 cut(s) 138, 523, 750, 983
Bme18I GGWCC 3 cut(s) 263, 916, 1022
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 5 cut(s) 118, 181, 263, 916, 1022
BmiI GGNNCC 4 cut(s) 120, 264, 333, 886
BmrFI CCNGG 4 cut(s) 138, 523, 750, 983
BmrI ACTGGG 2 cut(s) 74, 861
BmsI GCATC 3 cut(s) 613, 657, 1435
BmuI ACTGGG 2 cut(s) 74, 861
Bpu14I TTCGAA 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 1240
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 6 cut(s) 54, 137, 266, 423, 982, 1272
BsaWI WCCGGW 1 cut(s) 556
Bsc4I CCNNNNNNNGG 3 cut(s) 480, 925, 988
Bse1I ACTGG 3 cut(s) 69, 129, 856
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 4 cut(s) 138, 523, 750, 983
BseDI CCNNGG 6 cut(s) 54, 137, 266, 423, 982, 1272
BseGI GGATG 4 cut(s) 50, 189, 1064, 1282
BseLI CCNNNNNNNGG 3 cut(s) 480, 925, 988
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 5 cut(s) 187, 222, 328, 377, 990
BseNI ACTGG 3 cut(s) 69, 129, 856
BseRI GAGGAG 2 cut(s) 677, 1181
BseXI GCAGC 3 cut(s) 58, 472, 1015
BsgI GTGCAG 2 cut(s) 479, 888
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 4 cut(s) 12, 119, 183, 473
BshNI GGYRCC 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 324
BsiSI CCGG 2 cut(s) 557, 1148
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 3 cut(s) 480, 925, 988
BsmAI GTCTC 2 cut(s) 317, 806
BsmFI GGGAC 1 cut(s) 722
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 4 cut(s) 12, 119, 183, 473
Bso31I GGTCTC 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
BspACI CCGC 6 cut(s) 74, 463, 698, 725, 774, 1244
BspANI GGCC 4 cut(s) 12, 119, 183, 473
BspCNI CTCAG 5 cut(s) 186, 223, 327, 378, 991
BspLI GGNNCC 4 cut(s) 120, 264, 333, 886
BspMAI CTGCAG 1 cut(s) 1426
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 453, 491
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 3 cut(s) 69, 129, 856
BssECI CCNNGG 6 cut(s) 54, 137, 266, 423, 982, 1272
BssMI GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
BssNI GRCGYC 1 cut(s) 1240
BssT1I CCWWGG 4 cut(s) 54, 266, 423, 1272
Bst2UI CCWGG 4 cut(s) 138, 523, 750, 983
Bst4CI ACNGT 3 cut(s) 278, 676, 1030
Bst6I CTCTTC 2 cut(s) 321, 851
BstACI GRCGYC 1 cut(s) 1240
BstBAI YACGTR 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 405, 946
BstDEI CTNAG 5 cut(s) 173, 231, 314, 386, 999
BstF5I GGATG 4 cut(s) 50, 189, 1064, 1282
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 6 cut(s) 39, 179, 324, 448, 486, 1215
BstMAI GTCTC 2 cut(s) 317, 806
BstMBI GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 68, 125
BstNI CCWGG 4 cut(s) 138, 523, 750, 983
BstNSI RCATGY 2 cut(s) 944, 1382
BstSCI CCNGG 4 cut(s) 136, 521, 748, 981
BstSFI CTRYAG 1 cut(s) 1422
BstSNI TACGTA 1 cut(s) 518
BstV1I GCAGC 3 cut(s) 58, 472, 1015
BstXI CCANNNNNNTGG 2 cut(s) 895, 1075
BsuRI GGCC 4 cut(s) 12, 119, 183, 473
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 4 cut(s) 50, 189, 1064, 1282
BtsI GCAGTG 2 cut(s) 462, 876
BtsIMutI CAGTG 4 cut(s) 62, 335, 462, 876
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 405, 946
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 5 cut(s) 118, 181, 263, 916, 1022
CseI GACGC 7 cut(s) 117, 206, 408, 1229, 1301, 1347, 1437
Csp6I GTAC 3 cut(s) 515, 519, 849
CviAII CATG 7 cut(s) 257, 343, 354, 620, 941, 1069, 1379
CviQI GTAC 3 cut(s) 515, 519, 849
DdeI CTNAG 5 cut(s) 173, 231, 314, 386, 999
DpnI GATC 6 cut(s) 38, 178, 323, 447, 485, 1214
DpnII GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 321, 851
EarI CTCTTC 2 cut(s) 321, 851
Eco105I TACGTA 1 cut(s) 518
Eco130I CCWWGG 4 cut(s) 54, 266, 423, 1272
Eco147I AGGCCT 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 3 cut(s) 263, 916, 1022
Eco57I CTGAAG 4 cut(s) 27, 813, 1383, 1427
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 4 cut(s) 136, 521, 748, 981
EcoT14I CCWWGG 4 cut(s) 54, 266, 423, 1272
ErhI CCWWGG 4 cut(s) 54, 266, 423, 1272
FaeI CATG 7 cut(s) 260, 346, 357, 623, 944, 1072, 1382
FaqI GGGAC 1 cut(s) 722
FatI CATG 7 cut(s) 256, 342, 353, 619, 940, 1068, 1378
FauI CCCGC 2 cut(s) 691, 767
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 2 cut(s) 87, 1415
Fnu4HI GCNGC 5 cut(s) 72, 75, 461, 726, 1004
FokI GGATG 4 cut(s) 37, 176, 1051, 1289
Fsp4HI GCNGC 5 cut(s) 72, 75, 461, 726, 1004
FspBI CTAG 8 cut(s) 729, 800, 1007, 1035, 1085, 1235, 1371, 1469
GlaI GCGC 1 cut(s) 402
GluI GCNGC 5 cut(s) 72, 75, 461, 726, 1004
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 4 cut(s) 12, 119, 183, 473
HapII CCGG 2 cut(s) 557, 1148
HgaI GACGC 7 cut(s) 117, 206, 408, 1229, 1301, 1347, 1437
HhaI GCGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 1240
Hin1II CATG 7 cut(s) 260, 346, 357, 623, 944, 1072, 1382
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HindIII AAGCTT 3 cut(s) 641, 1323, 1343
HpaII CCGG 2 cut(s) 557, 1148
HphI GGTGA 8 cut(s) 215, 376, 562, 607, 640, 845, 1209, 1454
Hpy166II GTNNAC 5 cut(s) 88, 564, 615, 1062, 1416
Hpy188I TCNGA 5 cut(s) 46, 176, 450, 1000, 1363
Hpy188III TCNNGA 1 cut(s) 599
Hpy8I GTNNAC 5 cut(s) 88, 564, 615, 1062, 1416
Hpy99I CGWCG 4 cut(s) 163, 510, 513, 1317
HpyAV CCTTC 7 cut(s) 391, 520, 574, 577, 760, 1402, 1433
HpyCH4III ACNGT 3 cut(s) 278, 676, 1030
HpyCH4IV ACGT 2 cut(s) 517, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 125
HpyF3I CTNAG 5 cut(s) 173, 231, 314, 386, 999
HpySE526I ACGT 2 cut(s) 517, 754
Hsp92I GRCGYC 1 cut(s) 1240
Hsp92II CATG 7 cut(s) 260, 346, 357, 623, 944, 1072, 1382
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 3 cut(s) 58, 472, 1015
LweI GCATC 3 cut(s) 613, 657, 1435
MaeI CTAG 8 cut(s) 729, 800, 1007, 1035, 1085, 1235, 1371, 1469
MaeII ACGT 2 cut(s) 517, 754
MaeIII GTNAC 4 cut(s) 278, 744, 1366, 1449
MalI GATC 6 cut(s) 38, 178, 323, 447, 485, 1214
MboI GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
MboII GAAGA 6 cut(s) 338, 819, 868, 1102, 1237, 1240
MfeI CAATTG 1 cut(s) 1155
MluCI AATT 6 cut(s) 40, 221, 536, 843, 931, 1155
MlyI GAGTC 3 cut(s) 41, 910, 1421
MmeI TCCRAC 2 cut(s) 85, 1049
MroXI GAANNNNTTC 1 cut(s) 1042
MseI TTAA 2 cut(s) 585, 1353
MslI CAYNNNNRTG 2 cut(s) 1073, 1197
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 2 cut(s) 557, 1148
MspR9I CCNGG 4 cut(s) 138, 523, 750, 983
MunI CAATTG 1 cut(s) 1155
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 4 cut(s) 138, 523, 750, 983
MwoI GCNNNNNNNGC 2 cut(s) 68, 125
NdeII GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
NlaIII CATG 7 cut(s) 260, 346, 357, 623, 944, 1072, 1382
NlaIV GGNNCC 4 cut(s) 120, 264, 333, 886
NmuCI GTSAC 2 cut(s) 1366, 1449
NspI RCATGY 2 cut(s) 944, 1382
NspV TTCGAA 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 191
PceI AGGCCT 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 1042
PfeI GAWTC 7 cut(s) 20, 350, 778, 1151, 1183, 1297, 1337
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 5 cut(s) 73, 76, 462, 727, 1005
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 3 cut(s) 41, 909, 1420
PpsI GAGTC 3 cut(s) 41, 909, 1420
Ppu21I YACGTR 1 cut(s) 518
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 4 cut(s) 136, 521, 748, 981
PspGI CCWGG 4 cut(s) 136, 521, 748, 981
PspN4I GGNNCC 4 cut(s) 120, 264, 333, 886
PspPI GGNCC 5 cut(s) 118, 181, 263, 916, 1022
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 1426
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 3 cut(s) 516, 520, 850
RsaNI GTAC 3 cut(s) 515, 519, 849
RseI CAYNNNNRTG 2 cut(s) 1073, 1197
SaqAI TTAA 2 cut(s) 585, 1353
SatI GCNGC 5 cut(s) 72, 75, 461, 726, 1004
Sau3AI GATC 6 cut(s) 36, 176, 321, 445, 483, 1212
Sau96I GGNCC 5 cut(s) 118, 181, 263, 916, 1022
ScaI AGTACT 1 cut(s) 850
SchI GAGTC 3 cut(s) 41, 910, 1421
ScrFI CCNGG 4 cut(s) 138, 523, 750, 983
SfaNI GCATC 3 cut(s) 613, 657, 1435
SfcI CTRYAG 1 cut(s) 1422
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 3 cut(s) 263, 916, 1022
SmiMI CAYNNNNRTG 2 cut(s) 1073, 1197
SnaBI TACGTA 1 cut(s) 518
SpeI ACTAGT 1 cut(s) 1370
Sse9I AATT 6 cut(s) 40, 221, 536, 843, 931, 1155
SseBI AGGCCT 1 cut(s) 12
SsiI CCGC 6 cut(s) 74, 463, 698, 725, 774, 1244
SspI AATATT 1 cut(s) 1136
SspMI CTAG 8 cut(s) 729, 800, 1007, 1035, 1085, 1235, 1371, 1469
StuI AGGCCT 1 cut(s) 12
StyD4I CCNGG 4 cut(s) 136, 521, 748, 981
StyI CCWWGG 4 cut(s) 54, 266, 423, 1272
TaaI ACNGT 3 cut(s) 278, 676, 1030
TaiI ACGT 2 cut(s) 520, 757
TaqI TCGA 5 cut(s) 23, 158, 324, 439, 498
TasI AATT 6 cut(s) 40, 221, 536, 843, 931, 1155
TatI WGTACW 1 cut(s) 848
TauI GCSGC 2 cut(s) 77, 728
TfiI GAWTC 7 cut(s) 20, 350, 778, 1151, 1183, 1297, 1337
Tru1I TTAA 2 cut(s) 585, 1353
Tru9I TTAA 2 cut(s) 585, 1353
TscAI CASTG 4 cut(s) 69, 342, 462, 876
TseFI GTSAC 2 cut(s) 1366, 1449
TseI GCWGC 3 cut(s) 71, 460, 1003
Tsp45I GTSAC 2 cut(s) 1366, 1449
TspDTI ATGAA 3 cut(s) 559, 1280, 1293
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 4 cut(s) 69, 342, 462, 876
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 3 cut(s) 263, 916, 1022
XapI RAATTY 1 cut(s) 536
XceI RCATGY 2 cut(s) 944, 1382
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmiI GTMKAC 2 cut(s) 87, 1415
XmnI GAANNNNTTC 1 cut(s) 1042
XspI CTAG 8 cut(s) 729, 800, 1007, 1035, 1085, 1235, 1371, 1469
ZrmI AGTACT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.