Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 71, 233, 483 |
| AclWI | GGATC | 4 cut(s) | 243, 317, 421, 427 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 337, 338 |
| AgsI | TTSAA | 2 cut(s) | 142, 217 |
| AjnI | CCWGG | 2 cut(s) | 22, 57 |
| AluBI | AGCT | 1 cut(s) | 125 |
| AluI | AGCT | 1 cut(s) | 125 |
| Alw21I | GWGCWC | 1 cut(s) | 250 |
| AlwI | GGATC | 4 cut(s) | 243, 317, 421, 427 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 3 cut(s) | 3, 55, 259 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AspLEI | GCGC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 2 cut(s) | 116, 260 |
| AsuC2I | CCSGG | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 2 cut(s) | 212, 308 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| AvaII | GGWCC | 1 cut(s) | 116 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| Bbv12I | GWGCWC | 1 cut(s) | 250 |
| BccI | CCATC | 2 cut(s) | 96, 299 |
| BceAI | ACGGC | 2 cut(s) | 84, 465 |
| BciT130I | CCWGG | 2 cut(s) | 24, 59 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcnI | CCSGG | 1 cut(s) | 135 |
| BfmI | CTRYAG | 2 cut(s) | 77, 271 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| Bme1390I | CCNGG | 3 cut(s) | 24, 59, 135 |
| Bme18I | GGWCC | 1 cut(s) | 116 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 2 cut(s) | 116, 260 |
| BmrFI | CCNGG | 3 cut(s) | 24, 59, 135 |
| BmsI | GCATC | 1 cut(s) | 177 |
| BpuMI | CCSGG | 1 cut(s) | 135 |
| BsaBI | GATNNNNATC | 1 cut(s) | 240 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 3 cut(s) | 134, 253, 263 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 337, 338 |
| Bse118I | RCCGGY | 1 cut(s) | 197 |
| Bse1I | ACTGG | 1 cut(s) | 374 |
| Bse8I | GATNNNNATC | 1 cut(s) | 240 |
| BseBI | CCWGG | 2 cut(s) | 24, 59 |
| BseDI | CCNNGG | 3 cut(s) | 134, 253, 263 |
| BseJI | GATNNNNATC | 1 cut(s) | 240 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 337, 338 |
| BseMII | CTCAG | 1 cut(s) | 140 |
| BseNI | ACTGG | 1 cut(s) | 374 |
| BshFI | GGCC | 3 cut(s) | 5, 57, 261 |
| BsiHKAI | GWGCWC | 1 cut(s) | 250 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 2 cut(s) | 134, 198 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 337, 338 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| BsnI | GGCC | 3 cut(s) | 5, 57, 261 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 250 |
| Bsp143I | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| BspACI | CCGC | 3 cut(s) | 71, 233, 483 |
| BspANI | GGCC | 3 cut(s) | 5, 57, 261 |
| BspCNI | CTCAG | 1 cut(s) | 139 |
| BspHI | TCATGA | 1 cut(s) | 238 |
| BspMAI | CTGCAG | 1 cut(s) | 81 |
| BspPI | GGATC | 4 cut(s) | 243, 317, 421, 427 |
| BspQI | GCTCTTC | 1 cut(s) | 464 |
| BsrFI | RCCGGY | 1 cut(s) | 197 |
| BsrI | ACTGG | 1 cut(s) | 374 |
| BssAI | RCCGGY | 1 cut(s) | 197 |
| BssECI | CCNNGG | 3 cut(s) | 134, 253, 263 |
| BssMI | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssT1I | CCWWGG | 1 cut(s) | 263 |
| Bst2UI | CCWGG | 2 cut(s) | 24, 59 |
| Bst4CI | ACNGT | 2 cut(s) | 187, 257 |
| Bst6I | CTCTTC | 1 cut(s) | 464 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstDSI | CCRYGG | 1 cut(s) | 253 |
| BstHHI | GCGC | 1 cut(s) | 168 |
| BstKTI | GATC | 7 cut(s) | 176, 238, 244, 312, 416, 435, 445 |
| BstMBI | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstNI | CCWGG | 2 cut(s) | 24, 59 |
| BstSCI | CCNGG | 3 cut(s) | 22, 57, 133 |
| BstSFI | CTRYAG | 2 cut(s) | 77, 271 |
| BstX2I | RGATCY | 1 cut(s) | 413 |
| BstYI | RGATCY | 1 cut(s) | 413 |
| BsuRI | GGCC | 3 cut(s) | 5, 57, 261 |
| BtgI | CCRYGG | 1 cut(s) | 253 |
| CciI | TCATGA | 1 cut(s) | 238 |
| CfoI | GCGC | 1 cut(s) | 168 |
| Cfr10I | RCCGGY | 1 cut(s) | 197 |
| Cfr13I | GGNCC | 2 cut(s) | 116, 260 |
| CseI | GACGC | 1 cut(s) | 203 |
| CviAII | CATG | 4 cut(s) | 97, 239, 283, 351 |
| CviJI | RGCY | 9 cut(s) | 5, 15, 36, 57, 74, 125, 261, 380, 452 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 15, 36, 57, 74, 125, 261, 380, 452 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 7 cut(s) | 175, 237, 243, 311, 415, 434, 444 |
| DpnII | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 464 |
| EarI | CTCTTC | 1 cut(s) | 464 |
| EciI | GGCGGA | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 1 cut(s) | 263 |
| Eco147I | AGGCCT | 1 cut(s) | 57 |
| Eco47I | GGWCC | 1 cut(s) | 116 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| EcoRII | CCWGG | 2 cut(s) | 22, 57 |
| EcoT14I | CCWWGG | 1 cut(s) | 263 |
| ErhI | CCWWGG | 1 cut(s) | 263 |
| FaeI | CATG | 4 cut(s) | 100, 242, 286, 354 |
| FaiI | YATR | 9 cut(s) | 98, 161, 163, 240, 273, 284, 303, 320, 352 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 4 cut(s) | 96, 238, 282, 350 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| GlaI | GCGC | 1 cut(s) | 167 |
| GluI | GCNGC | 1 cut(s) | 72 |
| HaeIII | GGCC | 3 cut(s) | 5, 57, 261 |
| HapII | CCGG | 2 cut(s) | 134, 198 |
| HgaI | GACGC | 1 cut(s) | 203 |
| HhaI | GCGC | 1 cut(s) | 168 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin1II | CATG | 4 cut(s) | 100, 242, 286, 354 |
| Hin6I | GCGC | 1 cut(s) | 166 |
| HinP1I | GCGC | 1 cut(s) | 166 |
| HinfI | GANTC | 2 cut(s) | 347, 479 |
| HpaII | CCGG | 2 cut(s) | 134, 198 |
| HphI | GGTGA | 2 cut(s) | 212, 308 |
| Hpy188I | TCNGA | 3 cut(s) | 173, 386, 413 |
| Hpy188III | TCNNGA | 2 cut(s) | 227, 239 |
| HpyAV | CCTTC | 2 cut(s) | 165, 456 |
| HpyCH4III | ACNGT | 2 cut(s) | 187, 257 |
| HpyCH4V | TGCA | 1 cut(s) | 79 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| Hsp92II | CATG | 4 cut(s) | 100, 242, 286, 354 |
| HspAI | GCGC | 1 cut(s) | 166 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| LguI | GCTCTTC | 1 cut(s) | 464 |
| LpnPI | CCDG | 9 cut(s) | 9, 36, 44, 48, 65, 71, 147, 211, 387 |
| LweI | GCATC | 1 cut(s) | 177 |
| MaeIII | GTNAC | 1 cut(s) | 200 |
| MalI | GATC | 7 cut(s) | 175, 237, 243, 311, 415, 434, 444 |
| MboI | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| MboII | GAAGA | 2 cut(s) | 101, 481 |
| MflI | RGATCY | 1 cut(s) | 413 |
| MhlI | GDGCHC | 1 cut(s) | 250 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 150, 218 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 356 |
| MnlI | CCTC | 5 cut(s) | 223, 316, 359, 392, 459 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 1 cut(s) | 243 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 134, 198 |
| MspR9I | CCNGG | 3 cut(s) | 24, 59, 135 |
| MvaI | CCWGG | 2 cut(s) | 24, 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NciI | CCSGG | 1 cut(s) | 135 |
| NdeII | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| NlaIII | CATG | 4 cut(s) | 100, 242, 286, 354 |
| NmuCI | GTSAC | 1 cut(s) | 200 |
| PaeR7I | CTCGAG | 1 cut(s) | 42 |
| PagI | TCATGA | 1 cut(s) | 238 |
| PceI | AGGCCT | 1 cut(s) | 57 |
| PciSI | GCTCTTC | 1 cut(s) | 464 |
| PfeI | GAWTC | 1 cut(s) | 479 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| PleI | GAGTC | 1 cut(s) | 355 |
| PpsI | GAGTC | 1 cut(s) | 355 |
| Psp6I | CCWGG | 2 cut(s) | 22, 57 |
| PspGI | CCWGG | 2 cut(s) | 22, 57 |
| PspPI | GGNCC | 2 cut(s) | 116, 260 |
| PspXI | VCTCGAGB | 1 cut(s) | 42 |
| PstI | CTGCAG | 1 cut(s) | 81 |
| PsuI | RGATCY | 1 cut(s) | 413 |
| RseI | CAYNNNNRTG | 1 cut(s) | 243 |
| SapI | GCTCTTC | 1 cut(s) | 464 |
| SatI | GCNGC | 1 cut(s) | 72 |
| Sau3AI | GATC | 7 cut(s) | 173, 235, 241, 309, 413, 432, 442 |
| Sau96I | GGNCC | 2 cut(s) | 116, 260 |
| SchI | GAGTC | 1 cut(s) | 356 |
| ScrFI | CCNGG | 3 cut(s) | 24, 59, 135 |
| SduI | GDGCHC | 1 cut(s) | 250 |
| SetI | ASST | 4 cut(s) | 121, 127, 298, 370 |
| SfaNI | GCATC | 1 cut(s) | 177 |
| SfcI | CTRYAG | 2 cut(s) | 77, 271 |
| Sfr274I | CTCGAG | 1 cut(s) | 42 |
| SgrAI | CRCCGGYG | 1 cut(s) | 197 |
| SinI | GGWCC | 1 cut(s) | 116 |
| SlaI | CTCGAG | 1 cut(s) | 42 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 243 |
| SmlI | CTYRAG | 1 cut(s) | 42 |
| SmoI | CTYRAG | 1 cut(s) | 42 |
| Sse9I | AATT | 2 cut(s) | 150, 218 |
| SseBI | AGGCCT | 1 cut(s) | 57 |
| SsiI | CCGC | 3 cut(s) | 71, 233, 483 |
| StuI | AGGCCT | 1 cut(s) | 57 |
| StyD4I | CCNGG | 3 cut(s) | 22, 57, 133 |
| StyI | CCWWGG | 1 cut(s) | 263 |
| TaaI | ACNGT | 2 cut(s) | 187, 257 |
| TaqI | TCGA | 3 cut(s) | 43, 226, 460 |
| TasI | AATT | 2 cut(s) | 150, 218 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 1 cut(s) | 479 |
| TseFI | GTSAC | 1 cut(s) | 200 |
| Tsp45I | GTSAC | 1 cut(s) | 200 |
| TspGWI | ACGGA | 1 cut(s) | 425 |
| VpaK11BI | GGWCC | 1 cut(s) | 116 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XhoI | CTCGAG | 1 cut(s) | 42 |