Rmu_sc0005992.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005992.1
OG0000049
Physical Location & Seq
Forward (+)
31891 .. 33315
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005992.1_g000007.1.cds

Sequence Viewer

Length: 1254 bp
atggctcacccggctgaccggtggtatctagtgggtcgcctgcttggcccgaagagtaagttctcgggtttcatagggactatagctacgatatggcgtatcaaatctggattgacgatccatgaagtgggagagcgatttgtgtttcaatttgagcgtgaggctgaaagaaacaagatcctacatggaggaccttggttttatagaaatacgatggtggtgctaggaggttatgacggtatcggtccggtgcacgaggttccactgcatctggtggaagcatgggttgcagttaagggccttccggtgggtcttccaaataaggctgcgctgaacttggtgggatcagccctggggcgtgtgatccggttcgaccagaatgccctatatcggaaggaagcagagcaaaggatccgattggtttttgatgttcgacgacgacttagggtttggatgcttttcgagttttcaccgacgatggtgcctgaactgtcgtttaactttgaaaaggtcagaggtttctgtaggagctgtggcttttttatgcatggtgagacaggatgtgatgactggttgactaaggagagagatgagatcttggctcagatccaagccacggctatggctggactatcattaactgcaggggaacgtgggcctcggattgagggagaggagatgcaagttcagagggtgatggtgattgcgtcggaaccggtggtagaggggccggtgttagtggggactgatccaccacatcattcctcactggctatggggaagaaatccccgatggagttgctcgagcccctggggatggataagggtaagggtacagaggtgatggctgttccccatcagagttatcctgcttcaggaactaagcgtaaagctgtggagggactcgatcgtttggggaagagaggtgtgtcttacactgaacctttactccaagttgacgatgggatgcagcttgtcctgcaacacaaaaatggtcaactgattgtctcgcccaggaagaagaaattgggtagaccaaagggaagtaagaacaaaccgaagtgtgtaaaggttctggagaatgagttccagggtaggaagtctaagaagtggaagcttagggaaagtgatcgccctggtcaagtgttggaggaaaaagagaaaagcagtacctctgaatatatggagcagctgccgactgatggtggcatttgtggggatgttggagcttcatcctcaactagtaatgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

417

Amino Acids

46.45

Weight (kDa)

9.38

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 127
AccI GTMKAC 1 cut(s) 1033
AclWI GGATC 8 cut(s) 112, 172, 352, 358, 406, 419, 601, 743
AcuI CTGAAG 1 cut(s) 858
AfaI GTAC 2 cut(s) 835, 1171
AfiI CCNNNNNNNGG 7 cut(s) 127, 307, 390, 616, 817, 875, 1202
AgeI ACCGGT 2 cut(s) 18, 715
AgsI TTSAA 2 cut(s) 149, 506
AhlI ACTAGT 1 cut(s) 1241
AjnI CCWGG 5 cut(s) 351, 810, 1013, 1089, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 1010, 1042
AloI GAACNNNNNNTCC 4 cut(s) 933, 965, 1070, 1102
AluBI AGCT 7 cut(s) 86, 531, 893, 973, 1117, 1192, 1229
AluI AGCT 7 cut(s) 86, 531, 893, 973, 1117, 1192, 1229
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 548, 1012
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 8 cut(s) 112, 172, 352, 358, 406, 419, 601, 743
Ama87I CYCGRG 2 cut(s) 64, 803
AoxI GGCC 4 cut(s) 46, 298, 656, 728
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 4 cut(s) 326, 970, 1189, 1192
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
AsiGI ACCGGT 2 cut(s) 18, 715
Asp700I GAANNNNTTC 1 cut(s) 1085
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 6 cut(s) 47, 191, 245, 298, 656, 728
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 5 cut(s) 462, 563, 706, 712, 853
AvaI CYCGRG 2 cut(s) 64, 803
AvaII GGWCC 2 cut(s) 191, 245
BaeGI GKGCMC 1 cut(s) 255
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BamHI GGATCC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 810
BauI CACGAG 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 313, 982, 1179, 1201
BccI CCATC 9 cut(s) 208, 472, 691, 787, 811, 838, 864, 956, 1196
BceAI ACGGC 1 cut(s) 633
BcgI CGANNNNNNTGC 8 cut(s) 202, 236, 362, 396, 463, 497, 781, 815
BciT130I CCWGG 5 cut(s) 353, 812, 1015, 1091, 1137
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 548, 1012
BcuI ACTAGT 1 cut(s) 1241
BfaI CTAG 3 cut(s) 29, 224, 1242
BfmI CTRYAG 3 cut(s) 81, 523, 642
BglI GCCNNNNNGGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 594
BisI GCNGC 4 cut(s) 327, 971, 1190, 1193
BlsI GCNGC 4 cut(s) 328, 972, 1191, 1194
Bme1390I CCNGG 6 cut(s) 11, 353, 812, 1015, 1091, 1137
Bme18I GGWCC 2 cut(s) 191, 245
BmeT110I CYCGRG 2 cut(s) 64, 803
BmgT120I GGNCC 6 cut(s) 47, 191, 245, 298, 656, 728
BmiI GGNNCC 5 cut(s) 261, 413, 483, 714, 729
BmrFI CCNGG 6 cut(s) 11, 353, 812, 1015, 1091, 1137
BmsI GCATC 4 cut(s) 277, 444, 669, 957
BpiI GAAGAC 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 1097
Bpu10I CCTNAGC 1 cut(s) 1118
BpuMI CCSGG 1 cut(s) 11
BsaWI WCCGGW 5 cut(s) 18, 247, 304, 366, 715
BsaXI ACNNNNNCTCC 4 cut(s) 933, 963, 1070, 1100
Bsc4I CCNNNNNNNGG 7 cut(s) 127, 307, 390, 616, 817, 875, 1202
Bse118I RCCGGY 3 cut(s) 18, 715, 730
Bse1I ACTGG 2 cut(s) 575, 774
BseBI CCWGG 5 cut(s) 353, 812, 1015, 1091, 1137
BseGI GGATG 6 cut(s) 459, 566, 822, 972, 1225, 1232
BseLI CCNNNNNNNGG 7 cut(s) 127, 307, 390, 616, 817, 875, 1202
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 2 cut(s) 575, 774
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 4 cut(s) 313, 982, 1179, 1201
Bsh1285I CGRYCG 1 cut(s) 910
BshFI GGCC 4 cut(s) 48, 300, 658, 730
BshNI GGYRCC 1 cut(s) 481
BshTI ACCGGT 2 cut(s) 18, 715
BsiEI CGRYCG 1 cut(s) 910
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 2 cut(s) 64, 803
BsiSI CCGG 7 cut(s) 11, 19, 248, 305, 367, 716, 731
BslFI GGGAC 3 cut(s) 91, 757, 915
BslI CCNNNNNNNGG 7 cut(s) 127, 307, 390, 616, 817, 875, 1202
BsmAI GTCTC 2 cut(s) 548, 1012
BsmFI GGGAC 3 cut(s) 91, 757, 915
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 4 cut(s) 48, 300, 658, 730
BsoBI CYCGRG 2 cut(s) 64, 803
Bsp1286I GDGCHC 2 cut(s) 255, 810
BspANI GGCC 4 cut(s) 48, 300, 658, 730
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 5 cut(s) 261, 413, 483, 714, 729
BspMAI CTGCAG 1 cut(s) 646
BspPI GGATC 8 cut(s) 112, 172, 352, 358, 406, 419, 601, 743
BspT107I GGYRCC 1 cut(s) 481
BsrFI RCCGGY 3 cut(s) 18, 715, 730
BsrI ACTGG 2 cut(s) 575, 774
BssAI RCCGGY 3 cut(s) 18, 715, 730
BssSI CACGAG 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 5 cut(s) 353, 812, 1015, 1091, 1137
Bst4CI ACNGT 2 cut(s) 239, 492
Bst6I CTCTTC 2 cut(s) 47, 914
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 6 cut(s) 443, 579, 603, 882, 1104, 1118
BstDSI CCRYGG 1 cut(s) 615
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 6 cut(s) 459, 566, 822, 972, 1225, 1232
BstHHI GCGC 1 cut(s) 331
BstMAI GTCTC 2 cut(s) 548, 1012
BstMCI CGRYCG 1 cut(s) 910
BstMWI GCNNNNNNNGC 4 cut(s) 11, 45, 287, 979
BstNI CCWGG 5 cut(s) 353, 812, 1015, 1091, 1137
BstSCI CCNGG 6 cut(s) 9, 351, 810, 1013, 1089, 1135
BstSFI CTRYAG 3 cut(s) 81, 523, 642
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 313, 982, 1179, 1201
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 4 cut(s) 177, 411, 594, 606
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 4 cut(s) 177, 411, 594, 606
BsuRI GGCC 4 cut(s) 48, 300, 658, 730
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 6 cut(s) 459, 566, 822, 972, 1225, 1232
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 3 cut(s) 263, 767, 936
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 331
Cfr10I RCCGGY 3 cut(s) 18, 715, 730
Cfr13I GGNCC 6 cut(s) 47, 191, 245, 298, 656, 728
CpoI CGGWCCG 1 cut(s) 245
CseI GACGC 1 cut(s) 696
Csp6I GTAC 2 cut(s) 834, 1170
CspAI ACCGGT 2 cut(s) 18, 715
CspI CGGWCCG 1 cut(s) 245
CviAII CATG 4 cut(s) 122, 185, 282, 548
CviQI GTAC 2 cut(s) 834, 1170
DdeI CTNAG 6 cut(s) 443, 579, 603, 882, 1104, 1118
Eam1104I CTCTTC 2 cut(s) 47, 914
EarI CTCTTC 2 cut(s) 47, 914
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 810
Eco47I GGWCC 2 cut(s) 191, 245
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 2 cut(s) 64, 803
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoO109I RGGNCCY 2 cut(s) 191, 298
EcoRII CCWGG 5 cut(s) 351, 810, 1013, 1089, 1135
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 125, 188, 285, 551
FaqI GGGAC 3 cut(s) 91, 757, 915
FatI CATG 4 cut(s) 121, 184, 281, 547
FblI GTMKAC 1 cut(s) 1033
Fnu4HI GCNGC 4 cut(s) 327, 971, 1190, 1193
FokI GGATG 6 cut(s) 466, 573, 829, 979, 1219, 1232
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 4 cut(s) 327, 971, 1190, 1193
FspBI CTAG 3 cut(s) 29, 224, 1242
GlaI GCGC 1 cut(s) 330
GluI GCNGC 4 cut(s) 327, 971, 1190, 1193
GsuI CTGGAG 1 cut(s) 1097
HaeIII GGCC 4 cut(s) 48, 300, 658, 730
HapII CCGG 7 cut(s) 11, 19, 248, 305, 367, 716, 731
HgaI GACGC 1 cut(s) 696
HhaI GCGC 1 cut(s) 331
Hin1II CATG 4 cut(s) 125, 188, 285, 551
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 3 cut(s) 576, 958, 998
HindII GTYRAC 3 cut(s) 576, 958, 998
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 1 cut(s) 903
HpaII CCGG 7 cut(s) 11, 19, 248, 305, 367, 716, 731
HphI GGTGA 5 cut(s) 462, 563, 706, 712, 853
Hpy166II GTNNAC 5 cut(s) 253, 576, 958, 998, 1034
Hpy188I TCNGA 9 cut(s) 393, 416, 515, 606, 663, 690, 712, 861, 1177
Hpy188III TCNNGA 3 cut(s) 108, 876, 1076
Hpy8I GTNNAC 5 cut(s) 253, 576, 958, 998, 1034
Hpy99I CGWCG 4 cut(s) 438, 441, 478, 712
HpyAV CCTTC 2 cut(s) 311, 388
HpyCH4III ACNGT 2 cut(s) 239, 492
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 8 cut(s) 253, 268, 290, 547, 644, 682, 970, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 45, 287, 979
HpyF3I CTNAG 6 cut(s) 443, 579, 603, 882, 1104, 1118
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 4 cut(s) 125, 188, 285, 551
HspAI GCGC 1 cut(s) 329
LmnI GCTCC 3 cut(s) 528, 1186, 1226
Lsp1109I GCAGC 4 cut(s) 313, 982, 1179, 1201
LweI GCATC 4 cut(s) 277, 444, 669, 957
MaeI CTAG 3 cut(s) 29, 224, 1242
MaeII ACGT 1 cut(s) 652
MboII GAAGA 6 cut(s) 64, 305, 793, 931, 1030, 1033
MflI RGATCY 4 cut(s) 177, 411, 594, 606
MhlI GDGCHC 2 cut(s) 255, 810
MluCI AATT 2 cut(s) 149, 1025
MlyI GAGTC 1 cut(s) 897
MmeI TCCRAC 3 cut(s) 690, 1128, 1204
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 1085
MseI TTAA 4 cut(s) 294, 498, 638, 1252
MslI CAYNNNNRTG 2 cut(s) 620, 990
MspA1I CMGCKG 1 cut(s) 1192
MspI CCGG 7 cut(s) 11, 19, 248, 305, 367, 716, 731
MspR9I CCNGG 6 cut(s) 11, 353, 812, 1015, 1091, 1137
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 5 cut(s) 353, 812, 1015, 1091, 1137
MwoI GCNNNNNNNGC 4 cut(s) 11, 45, 287, 979
NciI CCSGG 1 cut(s) 11
NlaIII CATG 4 cut(s) 125, 188, 285, 551
NlaIV GGNNCC 5 cut(s) 261, 413, 483, 714, 729
NsiI ATGCAT 1 cut(s) 549
PaeR7I CTCGAG 1 cut(s) 803
PasI CCCWGGG 2 cut(s) 352, 811
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 1085
PflMI CCANNNNNTGG 1 cut(s) 127
PinAI ACCGGT 2 cut(s) 18, 715
PkrI GCNGC 4 cut(s) 328, 972, 1191, 1194
Ple19I CGATCG 1 cut(s) 910
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 5 cut(s) 351, 810, 1013, 1089, 1135
PspGI CCWGG 5 cut(s) 351, 810, 1013, 1089, 1135
PspN4I GGNNCC 5 cut(s) 261, 413, 483, 714, 729
PspPI GGNCC 6 cut(s) 47, 191, 245, 298, 656, 728
PspPPI RGGWCCY 1 cut(s) 191
PspXI VCTCGAGB 1 cut(s) 803
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 4 cut(s) 177, 411, 594, 606
PvuI CGATCG 1 cut(s) 910
PvuII CAGCTG 1 cut(s) 1192
RsaI GTAC 2 cut(s) 835, 1171
RsaNI GTAC 2 cut(s) 834, 1170
RseI CAYNNNNRTG 2 cut(s) 620, 990
Rsr2I CGGWCCG 1 cut(s) 245
RsrII CGGWCCG 1 cut(s) 245
SaqAI TTAA 4 cut(s) 294, 498, 638, 1252
SatI GCNGC 4 cut(s) 327, 971, 1190, 1193
Sau96I GGNCC 6 cut(s) 47, 191, 245, 298, 656, 728
SchI GAGTC 1 cut(s) 897
ScrFI CCNGG 6 cut(s) 11, 353, 812, 1015, 1091, 1137
SduI GDGCHC 2 cut(s) 255, 810
SfaNI GCATC 4 cut(s) 277, 444, 669, 957
SfcI CTRYAG 3 cut(s) 81, 523, 642
Sfr274I CTCGAG 1 cut(s) 803
SinI GGWCC 2 cut(s) 191, 245
SlaI CTCGAG 1 cut(s) 803
SmiMI CAYNNNNRTG 2 cut(s) 620, 990
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SpeI ACTAGT 1 cut(s) 1241
Sse9I AATT 2 cut(s) 149, 1025
SspMI CTAG 3 cut(s) 29, 224, 1242
StyD4I CCNGG 6 cut(s) 9, 351, 810, 1013, 1089, 1135
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 239, 492
TaiI ACGT 1 cut(s) 655
TaqI TCGA 5 cut(s) 372, 433, 462, 804, 906
TaqII GACCGA 1 cut(s) 233
TasI AATT 2 cut(s) 149, 1025
Tru1I TTAA 4 cut(s) 294, 498, 638, 1252
Tru9I TTAA 4 cut(s) 294, 498, 638, 1252
TscAI CASTG 3 cut(s) 270, 774, 943
TseI GCWGC 4 cut(s) 326, 970, 1189, 1192
TspDTI ATGAA 3 cut(s) 61, 138, 1221
TspRI CASTG 3 cut(s) 270, 774, 943
Van91I CCANNNNNTGG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 251
VpaK11BI GGWCC 2 cut(s) 191, 245
XagI CCTNNNNNAGG 1 cut(s) 873
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XhoI CTCGAG 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 1033
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 3 cut(s) 29, 224, 1242
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.