Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CBM_20 | PF00686 | 86 - 174 | 1.4e-19 | Starch binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 1 cut(s) | 239 |
| AcsI | RAATTY | 3 cut(s) | 118, 492, 635 |
| AcuI | CTGAAG | 2 cut(s) | 542, 713 |
| AfaI | GTAC | 1 cut(s) | 942 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 335, 372, 540 |
| AgsI | TTSAA | 5 cut(s) | 123, 354, 436, 691, 830 |
| AjnI | CCWGG | 5 cut(s) | 402, 478, 503, 612, 931 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 318, 350 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 906, 938 |
| AluBI | AGCT | 2 cut(s) | 77, 167 |
| AluI | AGCT | 2 cut(s) | 77, 167 |
| Alw26I | GTCTC | 1 cut(s) | 590 |
| AlwI | GGATC | 1 cut(s) | 239 |
| AoxI | GGCC | 1 cut(s) | 916 |
| ApeKI | GCWGC | 1 cut(s) | 242 |
| ApoI | RAATTY | 3 cut(s) | 118, 492, 635 |
| AspA2I | CCTAGG | 1 cut(s) | 155 |
| AspLEI | GCGC | 1 cut(s) | 247 |
| AspS9I | GGNCC | 1 cut(s) | 482 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| AvaII | GGWCC | 1 cut(s) | 482 |
| AvrII | CCTAGG | 1 cut(s) | 155 |
| AxyI | CCTNAGG | 1 cut(s) | 793 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 63, 95 |
| BauI | CACGAG | 1 cut(s) | 926 |
| BbsI | GAAGAC | 3 cut(s) | 543, 891, 897 |
| BbvI | GCAGC | 1 cut(s) | 254 |
| BccI | CCATC | 5 cut(s) | 70, 256, 374, 755, 974 |
| BceAI | ACGGC | 1 cut(s) | 903 |
| BciT130I | CCWGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| BciVI | GTATCC | 1 cut(s) | 502 |
| BcoDI | GTCTC | 1 cut(s) | 590 |
| BfaI | CTAG | 2 cut(s) | 93, 156 |
| BfoI | RGCGCY | 1 cut(s) | 248 |
| BfuI | GTATCC | 1 cut(s) | 502 |
| BglII | AGATCT | 2 cut(s) | 17, 463 |
| BisI | GCNGC | 2 cut(s) | 243, 292 |
| BlnI | CCTAGG | 1 cut(s) | 155 |
| BlsI | GCNGC | 2 cut(s) | 244, 293 |
| Bme1390I | CCNGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| Bme18I | GGWCC | 1 cut(s) | 482 |
| BmgT120I | GGNCC | 1 cut(s) | 482 |
| BmiI | GGNNCC | 2 cut(s) | 209, 347 |
| BmrFI | CCNGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| BmsI | GCATC | 2 cut(s) | 780, 988 |
| BpiI | GAAGAC | 3 cut(s) | 543, 891, 897 |
| BsaJI | CCNNGG | 2 cut(s) | 155, 504 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 906, 936 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 335, 372, 540 |
| Bse1I | ACTGG | 4 cut(s) | 377, 430, 545, 958 |
| Bse21I | CCTNAGG | 1 cut(s) | 793 |
| Bse3DI | GCAATG | 1 cut(s) | 750 |
| BseBI | CCWGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| BseDI | CCNNGG | 2 cut(s) | 155, 504 |
| BseGI | GGATG | 2 cut(s) | 788, 811 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 335, 372, 540 |
| BseMI | GCAATG | 1 cut(s) | 750 |
| BseMII | CTCAG | 2 cut(s) | 74, 231 |
| BseNI | ACTGG | 4 cut(s) | 377, 430, 545, 958 |
| BseXI | GCAGC | 1 cut(s) | 254 |
| Bsh1285I | CGRYCG | 1 cut(s) | 176 |
| BshFI | GGCC | 1 cut(s) | 918 |
| BsiEI | CGRYCG | 1 cut(s) | 176 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 335, 372, 540 |
| BsmAI | GTCTC | 1 cut(s) | 590 |
| BsmBI | CGTCTC | 1 cut(s) | 590 |
| BsnI | GGCC | 1 cut(s) | 918 |
| Bsp143I | GATC | 4 cut(s) | 17, 173, 231, 463 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 1 cut(s) | 918 |
| BspCNI | CTCAG | 2 cut(s) | 75, 230 |
| BspHI | TCATGA | 1 cut(s) | 774 |
| BspLI | GGNNCC | 2 cut(s) | 209, 347 |
| BspPI | GGATC | 1 cut(s) | 239 |
| BspQI | GCTCTTC | 1 cut(s) | 84 |
| BsrDI | GCAATG | 1 cut(s) | 750 |
| BsrI | ACTGG | 4 cut(s) | 377, 430, 545, 958 |
| BssECI | CCNNGG | 2 cut(s) | 155, 504 |
| BssMI | GATC | 4 cut(s) | 17, 173, 231, 463 |
| BssSI | CACGAG | 1 cut(s) | 926 |
| BssT1I | CCWWGG | 1 cut(s) | 155 |
| Bst2BI | CACGAG | 1 cut(s) | 926 |
| Bst2UI | CCWGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| Bst4CI | ACNGT | 5 cut(s) | 259, 342, 397, 821, 863 |
| Bst6I | CTCTTC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 4 cut(s) | 83, 217, 313, 793 |
| BstF5I | GGATG | 2 cut(s) | 788, 811 |
| BstH2I | RGCGCY | 1 cut(s) | 248 |
| BstHHI | GCGC | 1 cut(s) | 247 |
| BstKTI | GATC | 4 cut(s) | 20, 176, 234, 466 |
| BstMAI | GTCTC | 1 cut(s) | 590 |
| BstMBI | GATC | 4 cut(s) | 17, 173, 231, 463 |
| BstMCI | CGRYCG | 1 cut(s) | 176 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 64 |
| BstNI | CCWGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| BstSCI | CCNGG | 5 cut(s) | 402, 478, 503, 612, 931 |
| BstV1I | GCAGC | 1 cut(s) | 254 |
| BstV2I | GAAGAC | 3 cut(s) | 543, 891, 897 |
| BstX2I | RGATCY | 2 cut(s) | 17, 463 |
| BstYI | RGATCY | 2 cut(s) | 17, 463 |
| Bsu36I | CCTNAGG | 1 cut(s) | 793 |
| BsuI | GTATCC | 1 cut(s) | 502 |
| BsuRI | GGCC | 1 cut(s) | 918 |
| BtgZI | GCGATG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 788, 811 |
| BtsIMutI | CAGTG | 2 cut(s) | 347, 979 |
| CciI | TCATGA | 1 cut(s) | 774 |
| CfoI | GCGC | 1 cut(s) | 247 |
| Cfr13I | GGNCC | 1 cut(s) | 482 |
| CseI | GACGC | 2 cut(s) | 47, 607 |
| CsiI | ACCWGGT | 1 cut(s) | 478 |
| Csp6I | GTAC | 1 cut(s) | 941 |
| CviAII | CATG | 4 cut(s) | 263, 775, 802, 898 |
| CviJI | RGCY | 9 cut(s) | 8, 44, 77, 167, 533, 617, 738, 918, 984 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 44, 77, 167, 533, 617, 738, 918, 984 |
| CviQI | GTAC | 1 cut(s) | 941 |
| DdeI | CTNAG | 4 cut(s) | 83, 217, 313, 793 |
| DpnI | GATC | 4 cut(s) | 19, 175, 233, 465 |
| DpnII | GATC | 4 cut(s) | 17, 173, 231, 463 |
| Eam1104I | CTCTTC | 1 cut(s) | 84 |
| EarI | CTCTTC | 1 cut(s) | 84 |
| Eco130I | CCWWGG | 1 cut(s) | 155 |
| Eco32I | GATATC | 1 cut(s) | 970 |
| Eco47I | GGWCC | 1 cut(s) | 482 |
| Eco57I | CTGAAG | 2 cut(s) | 542, 713 |
| Eco81I | CCTNAGG | 1 cut(s) | 793 |
| EcoRI | GAATTC | 2 cut(s) | 118, 492 |
| EcoRII | CCWGG | 5 cut(s) | 402, 478, 503, 612, 931 |
| EcoRV | GATATC | 1 cut(s) | 970 |
| EcoT14I | CCWWGG | 1 cut(s) | 155 |
| ErhI | CCWWGG | 1 cut(s) | 155 |
| Esp3I | CGTCTC | 1 cut(s) | 590 |
| FaeI | CATG | 4 cut(s) | 266, 778, 805, 901 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 278, 310 |
| FatI | CATG | 4 cut(s) | 262, 774, 801, 897 |
| Fnu4HI | GCNGC | 2 cut(s) | 243, 292 |
| FokI | GGATG | 2 cut(s) | 775, 818 |
| Fsp4HI | GCNGC | 2 cut(s) | 243, 292 |
| FspBI | CTAG | 2 cut(s) | 93, 156 |
| GlaI | GCGC | 1 cut(s) | 246 |
| GluI | GCNGC | 2 cut(s) | 243, 292 |
| HaeII | RGCGCY | 1 cut(s) | 248 |
| HaeIII | GGCC | 1 cut(s) | 918 |
| HgaI | GACGC | 2 cut(s) | 47, 607 |
| HhaI | GCGC | 1 cut(s) | 247 |
| Hin1II | CATG | 4 cut(s) | 266, 778, 805, 901 |
| Hin6I | GCGC | 1 cut(s) | 245 |
| HinP1I | GCGC | 1 cut(s) | 245 |
| HincII | GTYRAC | 1 cut(s) | 400 |
| HindII | GTYRAC | 1 cut(s) | 400 |
| HinfI | GANTC | 2 cut(s) | 85, 215 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy166II | GTNNAC | 2 cut(s) | 400, 903 |
| Hpy188I | TCNGA | 6 cut(s) | 84, 190, 379, 561, 631, 712 |
| Hpy188III | TCNNGA | 3 cut(s) | 485, 731, 775 |
| Hpy8I | GTNNAC | 2 cut(s) | 400, 903 |
| Hpy99I | CGWCG | 1 cut(s) | 31 |
| HpyAV | CCTTC | 2 cut(s) | 360, 905 |
| HpyCH4III | ACNGT | 5 cut(s) | 259, 342, 397, 821, 863 |
| HpyCH4IV | ACGT | 1 cut(s) | 29 |
| HpyCH4V | TGCA | 7 cut(s) | 14, 38, 128, 647, 750, 755, 771 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 64 |
| HpyF3I | CTNAG | 4 cut(s) | 83, 217, 313, 793 |
| HpySE526I | ACGT | 1 cut(s) | 29 |
| Hsp92II | CATG | 4 cut(s) | 266, 778, 805, 901 |
| HspAI | GCGC | 1 cut(s) | 245 |
| Kzo9I | GATC | 4 cut(s) | 17, 173, 231, 463 |
| LguI | GCTCTTC | 1 cut(s) | 84 |
| Lsp1109I | GCAGC | 1 cut(s) | 254 |
| LweI | GCATC | 2 cut(s) | 780, 988 |
| MabI | ACCWGGT | 1 cut(s) | 478 |
| MaeI | CTAG | 2 cut(s) | 93, 156 |
| MaeII | ACGT | 1 cut(s) | 29 |
| MaeIII | GTNAC | 2 cut(s) | 619, 949 |
| MalI | GATC | 4 cut(s) | 19, 175, 233, 465 |
| MboI | GATC | 4 cut(s) | 17, 173, 231, 463 |
| MboII | GAAGA | 8 cut(s) | 12, 71, 488, 548, 821, 884, 896, 902 |
| MfeI | CAATTG | 1 cut(s) | 414 |
| MflI | RGATCY | 2 cut(s) | 17, 463 |
| MlyI | GAGTC | 2 cut(s) | 94, 209 |
| MnlI | CCTC | 5 cut(s) | 193, 652, 690, 908, 998 |
| MseI | TTAA | 3 cut(s) | 203, 369, 566 |
| MspR9I | CCNGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| MunI | CAATTG | 1 cut(s) | 414 |
| MvaI | CCWGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 64 |
| NdeII | GATC | 4 cut(s) | 17, 173, 231, 463 |
| NlaIII | CATG | 4 cut(s) | 266, 778, 805, 901 |
| NlaIV | GGNNCC | 2 cut(s) | 209, 347 |
| NmuCI | GTSAC | 1 cut(s) | 619 |
| PagI | TCATGA | 1 cut(s) | 774 |
| PciSI | GCTCTTC | 1 cut(s) | 84 |
| PkrI | GCNGC | 2 cut(s) | 244, 293 |
| Ple19I | CGATCG | 1 cut(s) | 176 |
| PleI | GAGTC | 2 cut(s) | 93, 209 |
| PpsI | GAGTC | 2 cut(s) | 93, 209 |
| Psp6I | CCWGG | 5 cut(s) | 402, 478, 503, 612, 931 |
| PspGI | CCWGG | 5 cut(s) | 402, 478, 503, 612, 931 |
| PspN4I | GGNNCC | 2 cut(s) | 209, 347 |
| PspPI | GGNCC | 1 cut(s) | 482 |
| PsuI | RGATCY | 2 cut(s) | 17, 463 |
| PvuI | CGATCG | 1 cut(s) | 176 |
| RsaI | GTAC | 1 cut(s) | 942 |
| RsaNI | GTAC | 1 cut(s) | 941 |
| SapI | GCTCTTC | 1 cut(s) | 84 |
| SaqAI | TTAA | 3 cut(s) | 203, 369, 566 |
| SatI | GCNGC | 2 cut(s) | 243, 292 |
| Sau3AI | GATC | 4 cut(s) | 17, 173, 231, 463 |
| Sau96I | GGNCC | 1 cut(s) | 482 |
| SchI | GAGTC | 2 cut(s) | 94, 209 |
| ScrFI | CCNGG | 5 cut(s) | 404, 480, 505, 614, 933 |
| SetI | ASST | 7 cut(s) | 32, 79, 169, 331, 405, 481, 506 |
| SexAI | ACCWGGT | 1 cut(s) | 478 |
| SfaNI | GCATC | 2 cut(s) | 780, 988 |
| SinI | GGWCC | 1 cut(s) | 482 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspI | AATATT | 1 cut(s) | 848 |
| SspMI | CTAG | 2 cut(s) | 93, 156 |
| StyD4I | CCNGG | 5 cut(s) | 402, 478, 503, 612, 931 |
| StyI | CCWWGG | 1 cut(s) | 155 |
| TaaI | ACNGT | 5 cut(s) | 259, 342, 397, 821, 863 |
| TaiI | ACGT | 1 cut(s) | 32 |
| TaqI | TCGA | 3 cut(s) | 172, 234, 986 |
| TaqII | GACCGA | 1 cut(s) | 504 |
| TatI | WGTACW | 1 cut(s) | 940 |
| TauI | GCSGC | 1 cut(s) | 294 |
| Tru1I | TTAA | 3 cut(s) | 203, 369, 566 |
| Tru9I | TTAA | 3 cut(s) | 203, 369, 566 |
| TscAI | CASTG | 2 cut(s) | 347, 979 |
| TseFI | GTSAC | 1 cut(s) | 619 |
| TseI | GCWGC | 1 cut(s) | 242 |
| Tsp45I | GTSAC | 1 cut(s) | 619 |
| TspDTI | ATGAA | 9 cut(s) | 125, 251, 339, 822, 828, 858, 885, 897, 924 |
| TspRI | CASTG | 2 cut(s) | 347, 979 |
| VpaK11BI | GGWCC | 1 cut(s) | 482 |
| XapI | RAATTY | 3 cut(s) | 118, 492, 635 |
| XmaJI | CCTAGG | 1 cut(s) | 155 |
| XspI | CTAG | 2 cut(s) | 93, 156 |