Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 544 |
| AccB1I | GGYRCC | 1 cut(s) | 544 |
| AciI | CCGC | 3 cut(s) | 17, 317, 617 |
| AclWI | GGATC | 1 cut(s) | 58 |
| AcoI | YGGCCR | 1 cut(s) | 533 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AfaI | GTAC | 4 cut(s) | 89, 486, 546, 566 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 400, 453, 616 |
| AgsI | TTSAA | 5 cut(s) | 73, 136, 153, 185, 212 |
| AjiI | CACGTC | 1 cut(s) | 493 |
| AjnI | CCWGG | 2 cut(s) | 127, 344 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 151, 183 |
| AluBI | AGCT | 2 cut(s) | 9, 227 |
| AluI | AGCT | 2 cut(s) | 9, 227 |
| Alw21I | GWGCWC | 1 cut(s) | 378 |
| Alw26I | GTCTC | 3 cut(s) | 328, 335, 368 |
| AlwI | GGATC | 1 cut(s) | 58 |
| AoxI | GGCC | 3 cut(s) | 308, 390, 533 |
| Asp718I | GGTACC | 1 cut(s) | 544 |
| AspA2I | CCTAGG | 1 cut(s) | 394 |
| AspLEI | GCGC | 1 cut(s) | 25 |
| AspS9I | GGNCC | 5 cut(s) | 79, 110, 254, 308, 391 |
| AsuHPI | GGTGA | 1 cut(s) | 652 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaII | GGWCC | 3 cut(s) | 79, 110, 254 |
| AvrII | CCTAGG | 1 cut(s) | 394 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 536, 569 |
| BanI | GGYRCC | 1 cut(s) | 544 |
| Bbv12I | GWGCWC | 1 cut(s) | 378 |
| BccI | CCATC | 3 cut(s) | 293, 511, 631 |
| BceAI | ACGGC | 1 cut(s) | 573 |
| BciT130I | CCWGG | 2 cut(s) | 129, 346 |
| BcoDI | GTCTC | 3 cut(s) | 328, 335, 368 |
| BfaI | CTAG | 4 cut(s) | 6, 62, 395, 673 |
| BglII | AGATCT | 1 cut(s) | 657 |
| BlnI | CCTAGG | 1 cut(s) | 394 |
| Bme1390I | CCNGG | 2 cut(s) | 129, 346 |
| Bme18I | GGWCC | 3 cut(s) | 79, 110, 254 |
| BmgBI | CACGTC | 1 cut(s) | 493 |
| BmgT120I | GGNCC | 5 cut(s) | 79, 110, 254, 308, 391 |
| BmiI | GGNNCC | 2 cut(s) | 112, 546 |
| BmrFI | CCNGG | 2 cut(s) | 129, 346 |
| BmrI | ACTGGG | 1 cut(s) | 56 |
| BmsI | GCATC | 1 cut(s) | 604 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BmuI | ACTGGG | 1 cut(s) | 56 |
| BoxI | GACNNNNGTC | 1 cut(s) | 347 |
| BpmI | CTGGAG | 3 cut(s) | 178, 359, 362 |
| BsaAI | YACGTR | 1 cut(s) | 664 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BsaI | GGTCTC | 2 cut(s) | 335, 368 |
| BsaJI | CCNNGG | 3 cut(s) | 257, 345, 394 |
| BsaWI | WCCGGW | 1 cut(s) | 547 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 151, 181, 360, 390, 542, 572 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 400, 453, 616 |
| Bse118I | RCCGGY | 2 cut(s) | 310, 535 |
| Bse1I | ACTGG | 3 cut(s) | 51, 375, 458 |
| BseBI | CCWGG | 2 cut(s) | 129, 346 |
| BseDI | CCNNGG | 3 cut(s) | 257, 345, 394 |
| BseGI | GGATG | 2 cut(s) | 522, 606 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 400, 453, 616 |
| BseNI | ACTGG | 3 cut(s) | 51, 375, 458 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BshFI | GGCC | 3 cut(s) | 310, 392, 535 |
| BshNI | GGYRCC | 1 cut(s) | 544 |
| BsiHKAI | GWGCWC | 1 cut(s) | 378 |
| BsiSI | CCGG | 3 cut(s) | 311, 536, 548 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 400, 453, 616 |
| BsmAI | GTCTC | 3 cut(s) | 328, 335, 368 |
| BsnI | GGCC | 3 cut(s) | 310, 392, 535 |
| Bso31I | GGTCTC | 2 cut(s) | 335, 368 |
| Bsp1286I | GDGCHC | 1 cut(s) | 378 |
| Bsp143I | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| BspACI | CCGC | 3 cut(s) | 17, 317, 617 |
| BspANI | GGCC | 3 cut(s) | 310, 392, 535 |
| BspLI | GGNNCC | 2 cut(s) | 112, 546 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 1 cut(s) | 58 |
| BspT107I | GGYRCC | 1 cut(s) | 544 |
| BspTNI | GGTCTC | 2 cut(s) | 335, 368 |
| BsrFI | RCCGGY | 2 cut(s) | 310, 535 |
| BsrI | ACTGG | 3 cut(s) | 51, 375, 458 |
| BssAI | RCCGGY | 2 cut(s) | 310, 535 |
| BssECI | CCNNGG | 3 cut(s) | 257, 345, 394 |
| BssMI | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| BssT1I | CCWWGG | 1 cut(s) | 394 |
| Bst2UI | CCWGG | 2 cut(s) | 129, 346 |
| Bst4CI | ACNGT | 1 cut(s) | 83 |
| Bst6I | CTCTTC | 3 cut(s) | 154, 456, 648 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstBAI | YACGTR | 1 cut(s) | 664 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDSI | CCRYGG | 1 cut(s) | 257 |
| BstF5I | GGATG | 2 cut(s) | 522, 606 |
| BstHHI | GCGC | 1 cut(s) | 25 |
| BstKTI | GATC | 5 cut(s) | 53, 147, 220, 232, 660 |
| BstMAI | GTCTC | 3 cut(s) | 328, 335, 368 |
| BstMBI | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 286 |
| BstNI | CCWGG | 2 cut(s) | 129, 346 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 347 |
| BstSCI | CCNGG | 2 cut(s) | 127, 344 |
| BstX2I | RGATCY | 2 cut(s) | 50, 657 |
| BstYI | RGATCY | 2 cut(s) | 50, 657 |
| BsuRI | GGCC | 3 cut(s) | 310, 392, 535 |
| BtgI | CCRYGG | 1 cut(s) | 257 |
| BtrI | CACGTC | 1 cut(s) | 493 |
| BtsCI | GGATG | 2 cut(s) | 522, 606 |
| BtsIMutI | CAGTG | 2 cut(s) | 44, 368 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CfoI | GCGC | 1 cut(s) | 25 |
| Cfr10I | RCCGGY | 2 cut(s) | 310, 535 |
| Cfr13I | GGNCC | 5 cut(s) | 79, 110, 254, 308, 391 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 4 cut(s) | 88, 485, 545, 565 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 35 |
| CviAII | CATG | 4 cut(s) | 91, 121, 248, 277 |
| CviQI | GTAC | 4 cut(s) | 88, 485, 545, 565 |
| DpnI | GATC | 5 cut(s) | 52, 146, 219, 231, 659 |
| DpnII | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| EaeI | YGGCCR | 1 cut(s) | 533 |
| Eam1104I | CTCTTC | 3 cut(s) | 154, 456, 648 |
| EarI | CTCTTC | 3 cut(s) | 154, 456, 648 |
| EciI | GGCGGA | 1 cut(s) | 332 |
| Eco130I | CCWWGG | 1 cut(s) | 394 |
| Eco31I | GGTCTC | 2 cut(s) | 335, 368 |
| Eco47I | GGWCC | 3 cut(s) | 79, 110, 254 |
| EcoO109I | RGGNCCY | 1 cut(s) | 391 |
| EcoRII | CCWGG | 2 cut(s) | 127, 344 |
| EcoT14I | CCWWGG | 1 cut(s) | 394 |
| ErhI | CCWWGG | 1 cut(s) | 394 |
| FaeI | CATG | 4 cut(s) | 94, 124, 251, 280 |
| FaiI | YATR | 8 cut(s) | 92, 122, 249, 267, 278, 297, 305, 625 |
| FatI | CATG | 4 cut(s) | 90, 120, 247, 276 |
| FokI | GGATG | 2 cut(s) | 529, 593 |
| FspBI | CTAG | 4 cut(s) | 6, 62, 395, 673 |
| GlaI | GCGC | 1 cut(s) | 24 |
| GsuI | CTGGAG | 3 cut(s) | 178, 359, 362 |
| HaeIII | GGCC | 3 cut(s) | 310, 392, 535 |
| HapII | CCGG | 3 cut(s) | 311, 536, 548 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 1 cut(s) | 25 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin1II | CATG | 4 cut(s) | 94, 124, 251, 280 |
| Hin6I | GCGC | 1 cut(s) | 23 |
| HinP1I | GCGC | 1 cut(s) | 23 |
| HincII | GTYRAC | 2 cut(s) | 177, 555 |
| HindII | GTYRAC | 2 cut(s) | 177, 555 |
| HinfI | GANTC | 4 cut(s) | 163, 181, 505, 629 |
| HpaI | GTTAAC | 1 cut(s) | 177 |
| HpaII | CCGG | 3 cut(s) | 311, 536, 548 |
| HphI | GGTGA | 1 cut(s) | 652 |
| Hpy166II | GTNNAC | 5 cut(s) | 79, 104, 177, 555, 565 |
| Hpy188III | TCNNGA | 5 cut(s) | 157, 185, 221, 338, 379 |
| Hpy8I | GTNNAC | 5 cut(s) | 79, 104, 177, 555, 565 |
| HpyAV | CCTTC | 5 cut(s) | 67, 382, 451, 565, 637 |
| HpyCH4III | ACNGT | 1 cut(s) | 83 |
| HpyCH4IV | ACGT | 4 cut(s) | 472, 492, 557, 663 |
| HpyCH4V | TGCA | 2 cut(s) | 247, 667 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 286 |
| HpySE526I | ACGT | 4 cut(s) | 472, 492, 557, 663 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| Hsp92II | CATG | 4 cut(s) | 94, 124, 251, 280 |
| HspAI | GCGC | 1 cut(s) | 23 |
| KpnI | GGTACC | 1 cut(s) | 548 |
| KspAI | GTTAAC | 1 cut(s) | 177 |
| Kzo9I | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| LmnI | GCTCC | 2 cut(s) | 381, 466 |
| LweI | GCATC | 1 cut(s) | 604 |
| MaeI | CTAG | 4 cut(s) | 6, 62, 395, 673 |
| MaeII | ACGT | 4 cut(s) | 472, 492, 557, 663 |
| MaeIII | GTNAC | 1 cut(s) | 42 |
| MalI | GATC | 5 cut(s) | 52, 146, 219, 231, 659 |
| MboI | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| MboII | GAAGA | 4 cut(s) | 141, 326, 473, 665 |
| MflI | RGATCY | 2 cut(s) | 50, 657 |
| MhlI | GDGCHC | 1 cut(s) | 378 |
| MluCI | AATT | 2 cut(s) | 212, 592 |
| MmeI | TCCRAC | 1 cut(s) | 494 |
| MnlI | CCTC | 4 cut(s) | 58, 153, 245, 457 |
| MseI | TTAA | 3 cut(s) | 176, 357, 450 |
| MslI | CAYNNNNRTG | 1 cut(s) | 281 |
| MspI | CCGG | 3 cut(s) | 311, 536, 548 |
| MspR9I | CCNGG | 2 cut(s) | 129, 346 |
| MvaI | CCWGG | 2 cut(s) | 129, 346 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 286 |
| NdeII | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIII | CATG | 4 cut(s) | 94, 124, 251, 280 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 546 |
| NmuCI | GTSAC | 1 cut(s) | 42 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 176 |
| PfeI | GAWTC | 4 cut(s) | 163, 181, 505, 629 |
| Ppu21I | YACGTR | 1 cut(s) | 664 |
| PshAI | GACNNNNGTC | 1 cut(s) | 347 |
| Psp6I | CCWGG | 2 cut(s) | 127, 344 |
| PspGI | CCWGG | 2 cut(s) | 127, 344 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 546 |
| PspPI | GGNCC | 5 cut(s) | 79, 110, 254, 308, 391 |
| PsuI | RGATCY | 2 cut(s) | 50, 657 |
| RsaI | GTAC | 4 cut(s) | 89, 486, 546, 566 |
| RsaNI | GTAC | 4 cut(s) | 88, 485, 545, 565 |
| RseI | CAYNNNNRTG | 1 cut(s) | 281 |
| SaqAI | TTAA | 3 cut(s) | 176, 357, 450 |
| Sau3AI | GATC | 5 cut(s) | 50, 144, 217, 229, 657 |
| Sau96I | GGNCC | 5 cut(s) | 79, 110, 254, 308, 391 |
| ScrFI | CCNGG | 2 cut(s) | 129, 346 |
| SduI | GDGCHC | 1 cut(s) | 378 |
| SfaNI | GCATC | 1 cut(s) | 604 |
| SinI | GGWCC | 3 cut(s) | 79, 110, 254 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 281 |
| Sse9I | AATT | 2 cut(s) | 212, 592 |
| SsiI | CCGC | 3 cut(s) | 17, 317, 617 |
| SspI | AATATT | 1 cut(s) | 243 |
| SspMI | CTAG | 4 cut(s) | 6, 62, 395, 673 |
| StyD4I | CCNGG | 2 cut(s) | 127, 344 |
| StyI | CCWWGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 1 cut(s) | 83 |
| TaiI | ACGT | 4 cut(s) | 475, 495, 560, 666 |
| TaqI | TCGA | 1 cut(s) | 220 |
| TasI | AATT | 2 cut(s) | 212, 592 |
| TatI | WGTACW | 1 cut(s) | 484 |
| TfiI | GAWTC | 4 cut(s) | 163, 181, 505, 629 |
| Tru1I | TTAA | 3 cut(s) | 176, 357, 450 |
| Tru9I | TTAA | 3 cut(s) | 176, 357, 450 |
| TscAI | CASTG | 2 cut(s) | 51, 375 |
| TseFI | GTSAC | 1 cut(s) | 42 |
| Tsp45I | GTSAC | 1 cut(s) | 42 |
| TspDTI | ATGAA | 2 cut(s) | 595, 621 |
| TspGWI | ACGGA | 1 cut(s) | 246 |
| TspRI | CASTG | 2 cut(s) | 51, 375 |
| VpaK11BI | GGWCC | 3 cut(s) | 79, 110, 254 |
| XmaJI | CCTAGG | 1 cut(s) | 394 |
| XspI | CTAG | 4 cut(s) | 6, 62, 395, 673 |