Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 715 |
| AccBSI | CCGCTC | 1 cut(s) | 128 |
| AciI | CCGC | 1 cut(s) | 128 |
| AclWI | GGATC | 4 cut(s) | 406, 640, 653, 770 |
| AcuI | CTGAAG | 1 cut(s) | 305 |
| AcyI | GRCGYC | 1 cut(s) | 716 |
| AfaI | GTAC | 3 cut(s) | 84, 313, 747 |
| AfeI | AGCGCT | 2 cut(s) | 240, 371 |
| AgsI | TTSAA | 4 cut(s) | 103, 383, 733, 740 |
| AjnI | CCWGG | 1 cut(s) | 808 |
| Alw26I | GTCTC | 1 cut(s) | 787 |
| AlwI | GGATC | 4 cut(s) | 406, 640, 653, 770 |
| Aor51HI | AGCGCT | 2 cut(s) | 240, 371 |
| AoxI | GGCC | 1 cut(s) | 280 |
| ApeKI | GCWGC | 3 cut(s) | 62, 200, 241 |
| AspLEI | GCGC | 3 cut(s) | 241, 372, 718 |
| AspS9I | GGNCC | 2 cut(s) | 425, 479 |
| AsuHPI | GGTGA | 1 cut(s) | 31 |
| AsuII | TTCGAA | 1 cut(s) | 667 |
| AvaII | GGWCC | 2 cut(s) | 425, 479 |
| BamHI | GGATCC | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 715 |
| BbvI | GCAGC | 3 cut(s) | 49, 187, 228 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 233, 267 |
| BciT130I | CCWGG | 1 cut(s) | 810 |
| BclI | TGATCA | 1 cut(s) | 607 |
| BcoDI | GTCTC | 1 cut(s) | 787 |
| BfmI | CTRYAG | 1 cut(s) | 242 |
| BfoI | RGCGCY | 3 cut(s) | 242, 373, 719 |
| BisI | GCNGC | 3 cut(s) | 63, 201, 242 |
| BlsI | GCNGC | 3 cut(s) | 64, 202, 243 |
| Bme1390I | CCNGG | 1 cut(s) | 810 |
| Bme18I | GGWCC | 2 cut(s) | 425, 479 |
| BmgT120I | GGNCC | 2 cut(s) | 425, 479 |
| BmiI | GGNNCC | 2 cut(s) | 647, 717 |
| BmrFI | CCNGG | 1 cut(s) | 810 |
| BmsI | GCATC | 3 cut(s) | 471, 678, 795 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 167, 199 |
| Bpu14I | TTCGAA | 1 cut(s) | 667 |
| BsaHI | GRCGYC | 1 cut(s) | 716 |
| BsaI | GGTCTC | 1 cut(s) | 787 |
| BsaJI | CCNNGG | 2 cut(s) | 428, 447 |
| BsaWI | WCCGGW | 3 cut(s) | 481, 648, 796 |
| BseBI | CCWGG | 1 cut(s) | 810 |
| BseDI | CCNNGG | 2 cut(s) | 428, 447 |
| BseGI | GGATG | 2 cut(s) | 693, 805 |
| BseMII | CTCAG | 2 cut(s) | 243, 321 |
| BseXI | GCAGC | 3 cut(s) | 49, 187, 228 |
| BsgI | GTGCAG | 1 cut(s) | 48 |
| BshFI | GGCC | 1 cut(s) | 282 |
| BshNI | GGYRCC | 1 cut(s) | 715 |
| BsiSI | CCGG | 3 cut(s) | 482, 649, 797 |
| BslFI | GGGAC | 1 cut(s) | 546 |
| BsmAI | GTCTC | 1 cut(s) | 787 |
| BsmFI | GGGAC | 1 cut(s) | 546 |
| BsmI | GAATGC | 1 cut(s) | 619 |
| BsnI | GGCC | 1 cut(s) | 282 |
| Bso31I | GGTCTC | 1 cut(s) | 787 |
| Bsp119I | TTCGAA | 1 cut(s) | 667 |
| Bsp1407I | TGTACA | 1 cut(s) | 82 |
| Bsp143I | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| Bsp19I | CCATGG | 1 cut(s) | 447 |
| BspACI | CCGC | 1 cut(s) | 128 |
| BspANI | GGCC | 1 cut(s) | 282 |
| BspCNI | CTCAG | 2 cut(s) | 242, 320 |
| BspLI | GGNNCC | 2 cut(s) | 647, 717 |
| BspMAI | CTGCAG | 1 cut(s) | 246 |
| BspPI | GGATC | 4 cut(s) | 406, 640, 653, 770 |
| BspQI | GCTCTTC | 1 cut(s) | 281 |
| BspT104I | TTCGAA | 1 cut(s) | 667 |
| BspT107I | GGYRCC | 1 cut(s) | 715 |
| BspTNI | GGTCTC | 1 cut(s) | 787 |
| BsrBI | CCGCTC | 1 cut(s) | 128 |
| BsrGI | TGTACA | 1 cut(s) | 82 |
| BssECI | CCNNGG | 2 cut(s) | 428, 447 |
| BssMI | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| BssNI | GRCGYC | 1 cut(s) | 716 |
| BssT1I | CCWWGG | 2 cut(s) | 428, 447 |
| Bst2UI | CCWGG | 1 cut(s) | 810 |
| Bst4CI | ACNGT | 1 cut(s) | 726 |
| Bst6I | CTCTTC | 1 cut(s) | 281 |
| BstACI | GRCGYC | 1 cut(s) | 716 |
| BstAUI | TGTACA | 1 cut(s) | 82 |
| BstBI | TTCGAA | 1 cut(s) | 667 |
| BstC8I | GCNNGC | 2 cut(s) | 246, 714 |
| BstDEI | CTNAG | 2 cut(s) | 229, 307 |
| BstDSI | CCRYGG | 1 cut(s) | 447 |
| BstF5I | GGATG | 2 cut(s) | 693, 805 |
| BstH2I | RGCGCY | 3 cut(s) | 242, 373, 719 |
| BstHHI | GCGC | 3 cut(s) | 241, 372, 718 |
| BstKTI | GATC | 6 cut(s) | 77, 253, 414, 610, 648, 765 |
| BstMAI | GTCTC | 1 cut(s) | 787 |
| BstMBI | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 68, 95, 125, 245, 288, 521, 713 |
| BstNI | CCWGG | 1 cut(s) | 810 |
| BstNSI | RCATGY | 1 cut(s) | 89 |
| BstSCI | CCNGG | 1 cut(s) | 808 |
| BstSFI | CTRYAG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 3 cut(s) | 49, 187, 228 |
| BstX2I | RGATCY | 2 cut(s) | 411, 645 |
| BstYI | RGATCY | 2 cut(s) | 411, 645 |
| BsuRI | GGCC | 1 cut(s) | 282 |
| BtgI | CCRYGG | 1 cut(s) | 447 |
| BtsCI | GGATG | 2 cut(s) | 693, 805 |
| Cac8I | GCNNGC | 2 cut(s) | 246, 714 |
| CfoI | GCGC | 3 cut(s) | 241, 372, 718 |
| Cfr13I | GGNCC | 2 cut(s) | 425, 479 |
| CseI | GACGC | 1 cut(s) | 718 |
| Csp6I | GTAC | 3 cut(s) | 83, 312, 746 |
| CviAII | CATG | 7 cut(s) | 10, 86, 419, 448, 488, 516, 787 |
| CviJI | RGCY | 8 cut(s) | 119, 133, 248, 282, 398, 547, 591, 776 |
| CviKI_1 | RGCY | 8 cut(s) | 119, 133, 248, 282, 398, 547, 591, 776 |
| CviQI | GTAC | 3 cut(s) | 83, 312, 746 |
| DdeI | CTNAG | 2 cut(s) | 229, 307 |
| DinI | GGCGCC | 1 cut(s) | 717 |
| DpnI | GATC | 6 cut(s) | 76, 252, 413, 609, 647, 764 |
| DpnII | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| Eam1104I | CTCTTC | 1 cut(s) | 281 |
| EarI | CTCTTC | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 2 cut(s) | 428, 447 |
| Eco31I | GGTCTC | 1 cut(s) | 787 |
| Eco47I | GGWCC | 2 cut(s) | 425, 479 |
| Eco47III | AGCGCT | 2 cut(s) | 240, 371 |
| Eco57I | CTGAAG | 1 cut(s) | 305 |
| EcoO109I | RGGNCCY | 1 cut(s) | 425 |
| EcoRII | CCWGG | 1 cut(s) | 808 |
| EcoT14I | CCWWGG | 2 cut(s) | 428, 447 |
| EgeI | GGCGCC | 1 cut(s) | 717 |
| EheI | GGCGCC | 1 cut(s) | 717 |
| ErhI | CCWWGG | 2 cut(s) | 428, 447 |
| FaeI | CATG | 7 cut(s) | 13, 89, 422, 451, 491, 519, 790 |
| FaqI | GGGAC | 1 cut(s) | 546 |
| FatI | CATG | 7 cut(s) | 9, 85, 418, 447, 487, 515, 786 |
| FauI | CCCGC | 1 cut(s) | 121 |
| FbaI | TGATCA | 1 cut(s) | 607 |
| Fnu4HI | GCNGC | 3 cut(s) | 63, 201, 242 |
| FokI | GGATG | 2 cut(s) | 700, 812 |
| Fsp4HI | GCNGC | 3 cut(s) | 63, 201, 242 |
| GlaI | GCGC | 3 cut(s) | 240, 371, 717 |
| GluI | GCNGC | 3 cut(s) | 63, 201, 242 |
| HaeII | RGCGCY | 3 cut(s) | 242, 373, 719 |
| HaeIII | GGCC | 1 cut(s) | 282 |
| HapII | CCGG | 3 cut(s) | 482, 649, 797 |
| HgaI | GACGC | 1 cut(s) | 718 |
| HhaI | GCGC | 3 cut(s) | 241, 372, 718 |
| Hin1I | GRCGYC | 1 cut(s) | 716 |
| Hin1II | CATG | 7 cut(s) | 13, 89, 422, 451, 491, 519, 790 |
| Hin6I | GCGC | 3 cut(s) | 239, 370, 716 |
| HinP1I | GCGC | 3 cut(s) | 239, 370, 716 |
| HinfI | GANTC | 7 cut(s) | 57, 182, 303, 352, 493, 502, 768 |
| HpaII | CCGG | 3 cut(s) | 482, 649, 797 |
| HphI | GGTGA | 1 cut(s) | 31 |
| Hpy188I | TCNGA | 7 cut(s) | 163, 232, 501, 612, 627, 762, 767 |
| Hpy188III | TCNNGA | 2 cut(s) | 300, 342 |
| Hpy99I | CGWCG | 1 cut(s) | 712 |
| HpyAV | CCTTC | 3 cut(s) | 41, 622, 663 |
| HpyCH4III | ACNGT | 1 cut(s) | 726 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 37, 65, 71, 244, 418, 487 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 68, 95, 125, 245, 288, 521, 713 |
| HpyF3I | CTNAG | 2 cut(s) | 229, 307 |
| Hsp92I | GRCGYC | 1 cut(s) | 716 |
| Hsp92II | CATG | 7 cut(s) | 13, 89, 422, 451, 491, 519, 790 |
| HspAI | GCGC | 3 cut(s) | 239, 370, 716 |
| KasI | GGCGCC | 1 cut(s) | 715 |
| Ksp22I | TGATCA | 1 cut(s) | 607 |
| Kzo9I | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| LguI | GCTCTTC | 1 cut(s) | 281 |
| Lsp1109I | GCAGC | 3 cut(s) | 49, 187, 228 |
| LweI | GCATC | 3 cut(s) | 471, 678, 795 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MalI | GATC | 6 cut(s) | 76, 252, 413, 609, 647, 764 |
| MbiI | CCGCTC | 1 cut(s) | 128 |
| MboI | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| MboII | GAAGA | 2 cut(s) | 233, 298 |
| MflI | RGATCY | 2 cut(s) | 411, 645 |
| MluCI | AATT | 2 cut(s) | 165, 383 |
| Mly113I | GGCGCC | 1 cut(s) | 716 |
| MlyI | GAGTC | 3 cut(s) | 66, 176, 777 |
| MmeI | TCCRAC | 2 cut(s) | 141, 740 |
| MnlI | CCTC | 9 cut(s) | 37, 103, 109, 226, 388, 416, 507, 625, 743 |
| MseI | TTAA | 2 cut(s) | 207, 528 |
| MslI | CAYNNNNRTG | 2 cut(s) | 14, 452 |
| MspI | CCGG | 3 cut(s) | 482, 649, 797 |
| MspR9I | CCNGG | 1 cut(s) | 810 |
| Mva1269I | GAATGC | 1 cut(s) | 619 |
| MvaI | CCWGG | 1 cut(s) | 810 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 68, 95, 125, 245, 288, 521, 713 |
| NarI | GGCGCC | 1 cut(s) | 716 |
| NcoI | CCATGG | 1 cut(s) | 447 |
| NdeII | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| NlaIII | CATG | 7 cut(s) | 13, 89, 422, 451, 491, 519, 790 |
| NlaIV | GGNNCC | 2 cut(s) | 647, 717 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NspI | RCATGY | 1 cut(s) | 89 |
| NspV | TTCGAA | 1 cut(s) | 667 |
| PciSI | GCTCTTC | 1 cut(s) | 281 |
| PctI | GAATGC | 1 cut(s) | 619 |
| PfeI | GAWTC | 4 cut(s) | 303, 352, 493, 502 |
| PkrI | GCNGC | 3 cut(s) | 64, 202, 243 |
| PleI | GAGTC | 3 cut(s) | 65, 176, 776 |
| PluTI | GGCGCC | 1 cut(s) | 719 |
| PpsI | GAGTC | 3 cut(s) | 65, 176, 776 |
| PpuMI | RGGWCCY | 1 cut(s) | 425 |
| Psp5II | RGGWCCY | 1 cut(s) | 425 |
| Psp6I | CCWGG | 1 cut(s) | 808 |
| PspGI | CCWGG | 1 cut(s) | 808 |
| PspN4I | GGNNCC | 2 cut(s) | 647, 717 |
| PspPI | GGNCC | 2 cut(s) | 425, 479 |
| PspPPI | RGGWCCY | 1 cut(s) | 425 |
| PstI | CTGCAG | 1 cut(s) | 246 |
| PsuI | RGATCY | 2 cut(s) | 411, 645 |
| RsaI | GTAC | 3 cut(s) | 84, 313, 747 |
| RsaNI | GTAC | 3 cut(s) | 83, 312, 746 |
| RseI | CAYNNNNRTG | 2 cut(s) | 14, 452 |
| SapI | GCTCTTC | 1 cut(s) | 281 |
| SaqAI | TTAA | 2 cut(s) | 207, 528 |
| SatI | GCNGC | 3 cut(s) | 63, 201, 242 |
| Sau3AI | GATC | 6 cut(s) | 74, 250, 411, 607, 645, 762 |
| Sau96I | GGNCC | 2 cut(s) | 425, 479 |
| SchI | GAGTC | 3 cut(s) | 66, 176, 777 |
| ScrFI | CCNGG | 1 cut(s) | 810 |
| SfaNI | GCATC | 3 cut(s) | 471, 678, 795 |
| SfcI | CTRYAG | 1 cut(s) | 242 |
| SfoI | GGCGCC | 1 cut(s) | 717 |
| SfuI | TTCGAA | 1 cut(s) | 667 |
| SinI | GGWCC | 2 cut(s) | 425, 479 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 14, 452 |
| Sse9I | AATT | 2 cut(s) | 165, 383 |
| SsiI | CCGC | 1 cut(s) | 128 |
| SspDI | GGCGCC | 1 cut(s) | 715 |
| StyD4I | CCNGG | 1 cut(s) | 808 |
| StyI | CCWWGG | 2 cut(s) | 428, 447 |
| TaaI | ACNGT | 1 cut(s) | 726 |
| TaqI | TCGA | 1 cut(s) | 667 |
| TasI | AATT | 2 cut(s) | 165, 383 |
| TatI | WGTACW | 1 cut(s) | 82 |
| TfiI | GAWTC | 4 cut(s) | 303, 352, 493, 502 |
| Tru1I | TTAA | 2 cut(s) | 207, 528 |
| Tru9I | TTAA | 2 cut(s) | 207, 528 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 3 cut(s) | 62, 200, 241 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 4 cut(s) | 137, 344, 350, 771 |
| VpaK11BI | GGWCC | 2 cut(s) | 425, 479 |
| XceI | RCATGY | 1 cut(s) | 89 |