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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 310 |
| AclWI | GGATC | 2 cut(s) | 228, 241 |
| AcuI | CTGAAG | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 41 |
| AgsI | TTSAA | 2 cut(s) | 377, 386 |
| AjiI | CACGTC | 1 cut(s) | 466 |
| AjnI | CCWGG | 2 cut(s) | 34, 52 |
| AluBI | AGCT | 1 cut(s) | 83 |
| AluI | AGCT | 1 cut(s) | 83 |
| Alw26I | GTCTC | 2 cut(s) | 63, 351 |
| AlwI | GGATC | 2 cut(s) | 228, 241 |
| AoxI | GGCC | 1 cut(s) | 77 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 311 |
| AsuHPI | GGTGA | 2 cut(s) | 403, 524 |
| BamHI | GGATCC | 1 cut(s) | 233 |
| BccI | CCATC | 2 cut(s) | 169, 445 |
| BciT130I | CCWGG | 2 cut(s) | 36, 54 |
| BcoDI | GTCTC | 2 cut(s) | 63, 351 |
| BfmI | CTRYAG | 2 cut(s) | 357, 483 |
| Bme1390I | CCNGG | 2 cut(s) | 36, 54 |
| BmgBI | CACGTC | 1 cut(s) | 466 |
| BmiI | GGNNCC | 1 cut(s) | 235 |
| BmrFI | CCNGG | 2 cut(s) | 36, 54 |
| BmsI | GCATC | 2 cut(s) | 84, 106 |
| BpmI | CTGGAG | 1 cut(s) | 28 |
| BpuEI | CTTGAG | 2 cut(s) | 333, 347 |
| BsaI | GGTCTC | 1 cut(s) | 63 |
| BsaJI | CCNNGG | 3 cut(s) | 52, 53, 101 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 41 |
| Bse1I | ACTGG | 1 cut(s) | 120 |
| Bse3DI | GCAATG | 2 cut(s) | 119, 408 |
| BseBI | CCWGG | 2 cut(s) | 36, 54 |
| BseDI | CCNNGG | 3 cut(s) | 52, 53, 101 |
| BseGI | GGATG | 4 cut(s) | 97, 184, 274, 337 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 41 |
| BseMI | GCAATG | 2 cut(s) | 119, 408 |
| BseMII | CTCAG | 1 cut(s) | 75 |
| BseNI | ACTGG | 1 cut(s) | 120 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| BseYI | CCCAGC | 2 cut(s) | 140, 440 |
| BshFI | GGCC | 1 cut(s) | 79 |
| BslFI | GGGAC | 3 cut(s) | 35, 210, 267 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 41 |
| BsmAI | GTCTC | 2 cut(s) | 63, 351 |
| BsmFI | GGGAC | 3 cut(s) | 35, 210, 267 |
| BsmI | GAATGC | 2 cut(s) | 442, 496 |
| BsnI | GGCC | 1 cut(s) | 79 |
| Bso31I | GGTCTC | 1 cut(s) | 63 |
| Bsp143I | GATC | 4 cut(s) | 87, 220, 233, 294 |
| BspANI | GGCC | 1 cut(s) | 79 |
| BspCNI | CTCAG | 1 cut(s) | 76 |
| BspHI | TCATGA | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 235 |
| BspPI | GGATC | 2 cut(s) | 228, 241 |
| BspTNI | GGTCTC | 1 cut(s) | 63 |
| BsrDI | GCAATG | 2 cut(s) | 119, 408 |
| BsrI | ACTGG | 1 cut(s) | 120 |
| BssECI | CCNNGG | 3 cut(s) | 52, 53, 101 |
| BssMI | GATC | 4 cut(s) | 87, 220, 233, 294 |
| BssT1I | CCWWGG | 1 cut(s) | 101 |
| Bst2UI | CCWGG | 2 cut(s) | 36, 54 |
| Bst6I | CTCTTC | 3 cut(s) | 68, 171, 381 |
| BstC8I | GCNNGC | 1 cut(s) | 81 |
| BstDEI | CTNAG | 3 cut(s) | 62, 84, 278 |
| BstF5I | GGATG | 4 cut(s) | 97, 184, 274, 337 |
| BstKTI | GATC | 4 cut(s) | 90, 223, 236, 297 |
| BstMAI | GTCTC | 2 cut(s) | 63, 351 |
| BstMBI | GATC | 4 cut(s) | 87, 220, 233, 294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstNI | CCWGG | 2 cut(s) | 36, 54 |
| BstSCI | CCNGG | 2 cut(s) | 34, 52 |
| BstSFI | CTRYAG | 2 cut(s) | 357, 483 |
| BstX2I | RGATCY | 1 cut(s) | 233 |
| BstYI | RGATCY | 1 cut(s) | 233 |
| BsuRI | GGCC | 1 cut(s) | 79 |
| BtrI | CACGTC | 1 cut(s) | 466 |
| BtsCI | GGATG | 4 cut(s) | 97, 184, 274, 337 |
| Cac8I | GCNNGC | 1 cut(s) | 81 |
| CciI | TCATGA | 1 cut(s) | 90 |
| CviAII | CATG | 1 cut(s) | 91 |
| CviJI | RGCY | 7 cut(s) | 79, 83, 140, 218, 248, 325, 470 |
| CviKI_1 | RGCY | 7 cut(s) | 79, 83, 140, 218, 248, 325, 470 |
| DdeI | CTNAG | 3 cut(s) | 62, 84, 278 |
| DpnI | GATC | 4 cut(s) | 89, 222, 235, 296 |
| DpnII | GATC | 4 cut(s) | 87, 220, 233, 294 |
| Eam1104I | CTCTTC | 3 cut(s) | 68, 171, 381 |
| EarI | CTCTTC | 3 cut(s) | 68, 171, 381 |
| Eco130I | CCWWGG | 1 cut(s) | 101 |
| Eco31I | GGTCTC | 1 cut(s) | 63 |
| Eco57I | CTGAAG | 1 cut(s) | 92 |
| EcoRII | CCWGG | 2 cut(s) | 34, 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 101 |
| EcoT22I | ATGCAT | 1 cut(s) | 99 |
| ErhI | CCWWGG | 1 cut(s) | 101 |
| FaeI | CATG | 1 cut(s) | 94 |
| FaiI | YATR | 2 cut(s) | 92, 185 |
| FaqI | GGGAC | 3 cut(s) | 35, 210, 267 |
| FatI | CATG | 1 cut(s) | 90 |
| FokI | GGATG | 4 cut(s) | 84, 191, 281, 344 |
| GsaI | CCCAGC | 2 cut(s) | 144, 444 |
| GsuI | CTGGAG | 1 cut(s) | 28 |
| HaeIII | GGCC | 1 cut(s) | 79 |
| Hin1II | CATG | 1 cut(s) | 94 |
| HinfI | GANTC | 3 cut(s) | 133, 368, 410 |
| HphI | GGTGA | 2 cut(s) | 403, 524 |
| Hpy166II | GTNNAC | 1 cut(s) | 68 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 415 |
| Hpy188III | TCNNGA | 2 cut(s) | 7, 91 |
| Hpy8I | GTNNAC | 1 cut(s) | 68 |
| HpyAV | CCTTC | 3 cut(s) | 208, 297, 421 |
| HpyCH4IV | ACGT | 2 cut(s) | 310, 465 |
| HpyCH4V | TGCA | 4 cut(s) | 97, 149, 401, 496 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpyF3I | CTNAG | 3 cut(s) | 62, 84, 278 |
| HpySE526I | ACGT | 2 cut(s) | 310, 465 |
| Hsp92II | CATG | 1 cut(s) | 94 |
| Kzo9I | GATC | 4 cut(s) | 87, 220, 233, 294 |
| LmnI | GCTCC | 2 cut(s) | 37, 457 |
| LweI | GCATC | 2 cut(s) | 84, 106 |
| MaeII | ACGT | 2 cut(s) | 310, 465 |
| MaeIII | GTNAC | 2 cut(s) | 111, 417 |
| MalI | GATC | 4 cut(s) | 89, 222, 235, 296 |
| MboI | GATC | 4 cut(s) | 87, 220, 233, 294 |
| MboII | GAAGA | 5 cut(s) | 85, 118, 158, 223, 398 |
| MfeI | CAATTG | 1 cut(s) | 523 |
| MflI | RGATCY | 1 cut(s) | 233 |
| MluCI | AATT | 4 cut(s) | 152, 192, 251, 523 |
| Mph1103I | ATGCAT | 1 cut(s) | 99 |
| MroXI | GAANNNNTTC | 1 cut(s) | 311 |
| MseI | TTAA | 1 cut(s) | 291 |
| MspA1I | CMGCKG | 1 cut(s) | 83 |
| MspR9I | CCNGG | 2 cut(s) | 36, 54 |
| MunI | CAATTG | 1 cut(s) | 523 |
| Mva1269I | GAATGC | 2 cut(s) | 442, 496 |
| MvaI | CCWGG | 2 cut(s) | 36, 54 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NdeII | GATC | 4 cut(s) | 87, 220, 233, 294 |
| NlaIII | CATG | 1 cut(s) | 94 |
| NlaIV | GGNNCC | 1 cut(s) | 235 |
| NsiI | ATGCAT | 1 cut(s) | 99 |
| PagI | TCATGA | 1 cut(s) | 90 |
| PasI | CCCWGGG | 1 cut(s) | 53 |
| PctI | GAATGC | 2 cut(s) | 442, 496 |
| PdmI | GAANNNNTTC | 1 cut(s) | 311 |
| PfeI | GAWTC | 3 cut(s) | 133, 368, 410 |
| Psp1406I | AACGTT | 1 cut(s) | 310 |
| Psp6I | CCWGG | 2 cut(s) | 34, 52 |
| PspFI | CCCAGC | 2 cut(s) | 140, 440 |
| PspGI | CCWGG | 2 cut(s) | 34, 52 |
| PspN4I | GGNNCC | 1 cut(s) | 235 |
| PsuI | RGATCY | 1 cut(s) | 233 |
| PvuII | CAGCTG | 1 cut(s) | 83 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| Sau3AI | GATC | 4 cut(s) | 87, 220, 233, 294 |
| ScrFI | CCNGG | 2 cut(s) | 36, 54 |
| SetI | ASST | 9 cut(s) | 25, 85, 313, 339, 393, 424, 468, 514, 522 |
| SfaNI | GCATC | 2 cut(s) | 84, 106 |
| SfcI | CTRYAG | 2 cut(s) | 357, 483 |
| SmlI | CTYRAG | 2 cut(s) | 326, 348 |
| SmoI | CTYRAG | 2 cut(s) | 326, 348 |
| Sse9I | AATT | 4 cut(s) | 152, 192, 251, 523 |
| StyD4I | CCNGG | 2 cut(s) | 34, 52 |
| StyI | CCWWGG | 1 cut(s) | 101 |
| TaiI | ACGT | 2 cut(s) | 313, 468 |
| TasI | AATT | 4 cut(s) | 152, 192, 251, 523 |
| TfiI | GAWTC | 3 cut(s) | 133, 368, 410 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TspDTI | ATGAA | 1 cut(s) | 468 |
| XmnI | GAANNNNTTC | 1 cut(s) | 311 |
| Zsp2I | ATGCAT | 1 cut(s) | 99 |