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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 354 |
| AciI | CCGC | 1 cut(s) | 26 |
| AcoI | YGGCCR | 1 cut(s) | 130 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 424, 529 |
| AflIII | ACRYGT | 1 cut(s) | 582 |
| AgsI | TTSAA | 3 cut(s) | 163, 224, 460 |
| AjiI | CACGTC | 1 cut(s) | 585 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 411, 443 |
| AluBI | AGCT | 7 cut(s) | 56, 124, 280, 317, 346, 413, 440 |
| AluI | AGCT | 7 cut(s) | 56, 124, 280, 317, 346, 413, 440 |
| Alw21I | GWGCWC | 1 cut(s) | 126 |
| Ama87I | CYCGRG | 1 cut(s) | 197 |
| AoxI | GGCC | 1 cut(s) | 130 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 374 |
| AspA2I | CCTAGG | 1 cut(s) | 74 |
| AsuHPI | GGTGA | 2 cut(s) | 220, 370 |
| AvaI | CYCGRG | 1 cut(s) | 197 |
| AvrII | CCTAGG | 1 cut(s) | 74 |
| AxyI | CCTNAGG | 1 cut(s) | 291 |
| BalI | TGGCCA | 1 cut(s) | 132 |
| BanII | GRGCYC | 2 cut(s) | 82, 126 |
| BbsI | GAAGAC | 2 cut(s) | 39, 278 |
| Bbv12I | GWGCWC | 1 cut(s) | 126 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BccI | CCATC | 1 cut(s) | 445 |
| BfaI | CTAG | 4 cut(s) | 57, 75, 84, 93 |
| BfmI | CTRYAG | 1 cut(s) | 51 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlnI | CCTAGG | 1 cut(s) | 74 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| BmeT110I | CYCGRG | 1 cut(s) | 197 |
| BmgBI | CACGTC | 1 cut(s) | 585 |
| BmiI | GGNNCC | 2 cut(s) | 81, 429 |
| BmsI | GCATC | 1 cut(s) | 388 |
| BpiI | GAAGAC | 2 cut(s) | 39, 278 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| BsaJI | CCNNGG | 1 cut(s) | 74 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 424, 529 |
| Bse21I | CCTNAGG | 1 cut(s) | 291 |
| Bse3DI | GCAATG | 1 cut(s) | 501 |
| BseDI | CCNNGG | 1 cut(s) | 74 |
| BseGI | GGATG | 3 cut(s) | 403, 487, 565 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 424, 529 |
| BseMI | GCAATG | 1 cut(s) | 501 |
| BseRI | GAGGAG | 2 cut(s) | 344, 407 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| BseYI | CCCAGC | 1 cut(s) | 100 |
| BsgI | GTGCAG | 1 cut(s) | 177 |
| BshFI | GGCC | 1 cut(s) | 132 |
| BsiHKAI | GWGCWC | 1 cut(s) | 126 |
| BsiHKCI | CYCGRG | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 424, 529 |
| BsmI | GAATGC | 1 cut(s) | 390 |
| BsnI | GGCC | 1 cut(s) | 132 |
| BsoBI | CYCGRG | 1 cut(s) | 197 |
| Bsp1286I | GDGCHC | 2 cut(s) | 82, 126 |
| Bsp143I | GATC | 4 cut(s) | 258, 333, 445, 511 |
| BspACI | CCGC | 1 cut(s) | 26 |
| BspANI | GGCC | 1 cut(s) | 132 |
| BspLI | GGNNCC | 2 cut(s) | 81, 429 |
| BsrDI | GCAATG | 1 cut(s) | 501 |
| BssECI | CCNNGG | 1 cut(s) | 74 |
| BssMI | GATC | 4 cut(s) | 258, 333, 445, 511 |
| BssT1I | CCWWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 228 |
| Bst6I | CTCTTC | 1 cut(s) | 577 |
| BstC8I | GCNNGC | 1 cut(s) | 415 |
| BstDEI | CTNAG | 7 cut(s) | 267, 276, 291, 300, 380, 402, 576 |
| BstEII | GGTNACC | 1 cut(s) | 151 |
| BstF5I | GGATG | 3 cut(s) | 403, 487, 565 |
| BstKTI | GATC | 4 cut(s) | 261, 336, 448, 514 |
| BstMBI | GATC | 4 cut(s) | 258, 333, 445, 511 |
| BstPI | GGTNACC | 1 cut(s) | 151 |
| BstSFI | CTRYAG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 278 |
| Bsu36I | CCTNAGG | 1 cut(s) | 291 |
| BsuRI | GGCC | 1 cut(s) | 132 |
| BtrI | CACGTC | 1 cut(s) | 585 |
| BtsCI | GGATG | 3 cut(s) | 403, 487, 565 |
| Cac8I | GCNNGC | 1 cut(s) | 415 |
| CviAII | CATG | 1 cut(s) | 487 |
| DdeI | CTNAG | 7 cut(s) | 267, 276, 291, 300, 380, 402, 576 |
| DpnI | GATC | 4 cut(s) | 260, 335, 447, 513 |
| DpnII | GATC | 4 cut(s) | 258, 333, 445, 511 |
| EaeI | YGGCCR | 1 cut(s) | 130 |
| Eam1104I | CTCTTC | 1 cut(s) | 577 |
| EarI | CTCTTC | 1 cut(s) | 577 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| Eco130I | CCWWGG | 1 cut(s) | 74 |
| Eco24I | GRGCYC | 2 cut(s) | 82, 126 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| Eco81I | CCTNAGG | 1 cut(s) | 291 |
| Eco88I | CYCGRG | 1 cut(s) | 197 |
| Eco91I | GGTNACC | 1 cut(s) | 151 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoO65I | GGTNACC | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 1 cut(s) | 74 |
| EcoT38I | GRGCYC | 2 cut(s) | 82, 126 |
| ErhI | CCWWGG | 1 cut(s) | 74 |
| FaeI | CATG | 1 cut(s) | 490 |
| FaiI | YATR | 4 cut(s) | 111, 312, 354, 488 |
| FatI | CATG | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 3 cut(s) | 410, 494, 572 |
| FriOI | GRGCYC | 2 cut(s) | 82, 126 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 4 cut(s) | 57, 75, 84, 93 |
| GluI | GCNGC | 1 cut(s) | 318 |
| GsaI | CCCAGC | 1 cut(s) | 104 |
| HaeIII | GGCC | 1 cut(s) | 132 |
| Hin1II | CATG | 1 cut(s) | 490 |
| HindIII | AAGCTT | 2 cut(s) | 278, 344 |
| HinfI | GANTC | 4 cut(s) | 47, 96, 106, 375 |
| HphI | GGTGA | 2 cut(s) | 220, 370 |
| Hpy188I | TCNGA | 1 cut(s) | 450 |
| HpyAV | CCTTC | 2 cut(s) | 197, 319 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 228 |
| HpyCH4IV | ACGT | 1 cut(s) | 584 |
| HpyCH4V | TGCA | 2 cut(s) | 194, 320 |
| HpyF3I | CTNAG | 7 cut(s) | 267, 276, 291, 300, 380, 402, 576 |
| HpySE526I | ACGT | 1 cut(s) | 584 |
| Hsp92II | CATG | 1 cut(s) | 490 |
| Kzo9I | GATC | 4 cut(s) | 258, 333, 445, 511 |
| LmnI | GCTCC | 3 cut(s) | 85, 121, 437 |
| LpnPI | CCDG | 7 cut(s) | 57, 114, 152, 170, 194, 204, 536 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| LweI | GCATC | 1 cut(s) | 388 |
| MaeI | CTAG | 4 cut(s) | 57, 75, 84, 93 |
| MaeII | ACGT | 1 cut(s) | 584 |
| MaeIII | GTNAC | 4 cut(s) | 12, 19, 151, 562 |
| MalI | GATC | 4 cut(s) | 260, 335, 447, 513 |
| MboI | GATC | 4 cut(s) | 258, 333, 445, 511 |
| MboII | GAAGA | 5 cut(s) | 44, 283, 506, 512, 564 |
| MfeI | CAATTG | 1 cut(s) | 419 |
| MhlI | GDGCHC | 2 cut(s) | 82, 126 |
| MlsI | TGGCCA | 1 cut(s) | 132 |
| MluCI | AATT | 2 cut(s) | 419, 597 |
| MluNI | TGGCCA | 1 cut(s) | 132 |
| MlyI | GAGTC | 1 cut(s) | 100 |
| MmeI | TCCRAC | 1 cut(s) | 347 |
| MnlI | CCTC | 9 cut(s) | 48, 142, 322, 385, 388, 418, 526, 550, 580 |
| Mox20I | TGGCCA | 1 cut(s) | 132 |
| MroXI | GAANNNNTTC | 1 cut(s) | 374 |
| MscI | TGGCCA | 1 cut(s) | 132 |
| MseI | TTAA | 1 cut(s) | 596 |
| Msp20I | TGGCCA | 1 cut(s) | 132 |
| MspA1I | CMGCKG | 1 cut(s) | 26 |
| MunI | CAATTG | 1 cut(s) | 419 |
| Mva1269I | GAATGC | 1 cut(s) | 390 |
| NdeII | GATC | 4 cut(s) | 258, 333, 445, 511 |
| NlaIII | CATG | 1 cut(s) | 490 |
| NlaIV | GGNNCC | 2 cut(s) | 81, 429 |
| NmuCI | GTSAC | 3 cut(s) | 12, 19, 562 |
| PctI | GAATGC | 1 cut(s) | 390 |
| PdmI | GAANNNNTTC | 1 cut(s) | 374 |
| PfeI | GAWTC | 3 cut(s) | 47, 96, 375 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| PleI | GAGTC | 1 cut(s) | 100 |
| PpsI | GAGTC | 1 cut(s) | 100 |
| PsiI | TTATAA | 1 cut(s) | 354 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| PspEI | GGTNACC | 1 cut(s) | 151 |
| PspFI | CCCAGC | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 2 cut(s) | 81, 429 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 216, 248 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SaqAI | TTAA | 1 cut(s) | 596 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 4 cut(s) | 258, 333, 445, 511 |
| SchI | GAGTC | 1 cut(s) | 100 |
| SduI | GDGCHC | 2 cut(s) | 82, 126 |
| SfaNI | GCATC | 1 cut(s) | 388 |
| SfcI | CTRYAG | 1 cut(s) | 51 |
| Sse9I | AATT | 2 cut(s) | 419, 597 |
| SsiI | CCGC | 1 cut(s) | 26 |
| SspMI | CTAG | 4 cut(s) | 57, 75, 84, 93 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StyI | CCWWGG | 1 cut(s) | 74 |
| TaaI | ACNGT | 2 cut(s) | 115, 228 |
| TaiI | ACGT | 1 cut(s) | 587 |
| TaqI | TCGA | 1 cut(s) | 66 |
| TasI | AATT | 2 cut(s) | 419, 597 |
| TfiI | GAWTC | 3 cut(s) | 47, 96, 375 |
| Tru1I | TTAA | 1 cut(s) | 596 |
| Tru9I | TTAA | 1 cut(s) | 596 |
| TseFI | GTSAC | 3 cut(s) | 12, 19, 562 |
| TseI | GCWGC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 3 cut(s) | 12, 19, 562 |
| XmaJI | CCTAGG | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 1 cut(s) | 374 |
| XspI | CTAG | 4 cut(s) | 57, 75, 84, 93 |