Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 99 | 3.5e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 256 |
| AccII | CGCG | 1 cut(s) | 131 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AfaI | GTAC | 1 cut(s) | 384 |
| AleI | CACNNNNGTG | 1 cut(s) | 179 |
| AluBI | AGCT | 3 cut(s) | 74, 151, 355 |
| AluI | AGCT | 3 cut(s) | 74, 151, 355 |
| Alw26I | GTCTC | 1 cut(s) | 116 |
| ApeKI | GCWGC | 2 cut(s) | 74, 352 |
| AspLEI | GCGC | 1 cut(s) | 17 |
| AspS9I | GGNCC | 2 cut(s) | 107, 139 |
| AsuNHI | GCTAGC | 1 cut(s) | 151 |
| AvaII | GGWCC | 2 cut(s) | 107, 139 |
| BbvI | GCAGC | 2 cut(s) | 61, 364 |
| BccI | CCATC | 2 cut(s) | 127, 202 |
| BcoDI | GTCTC | 1 cut(s) | 116 |
| BfaI | CTAG | 3 cut(s) | 18, 152, 215 |
| BfmI | CTRYAG | 1 cut(s) | 403 |
| BfoI | RGCGCY | 1 cut(s) | 18 |
| BisI | GCNGC | 2 cut(s) | 75, 353 |
| BlsI | GCNGC | 2 cut(s) | 76, 354 |
| BmcAI | AGTACT | 1 cut(s) | 384 |
| Bme18I | GGWCC | 2 cut(s) | 107, 139 |
| BmgT120I | GGNCC | 2 cut(s) | 107, 139 |
| BmiI | GGNNCC | 1 cut(s) | 194 |
| BmtI | GCTAGC | 1 cut(s) | 155 |
| Bpu10I | CCTNAGC | 1 cut(s) | 225 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BsaBI | GATNNNNATC | 1 cut(s) | 37 |
| Bse1I | ACTGG | 3 cut(s) | 335, 435, 448 |
| Bse8I | GATNNNNATC | 1 cut(s) | 37 |
| BseGI | GGATG | 1 cut(s) | 208 |
| BseJI | GATNNNNATC | 1 cut(s) | 37 |
| BseMII | CTCAG | 3 cut(s) | 239, 306, 342 |
| BseNI | ACTGG | 3 cut(s) | 335, 435, 448 |
| BseXI | GCAGC | 2 cut(s) | 61, 364 |
| BsgI | GTGCAG | 1 cut(s) | 60 |
| Bsh1236I | CGCG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 1 cut(s) | 116 |
| BspCNI | CTCAG | 3 cut(s) | 238, 307, 341 |
| BspFNI | CGCG | 1 cut(s) | 131 |
| BspLI | GGNNCC | 1 cut(s) | 194 |
| BspOI | GCTAGC | 1 cut(s) | 155 |
| BsrI | ACTGG | 3 cut(s) | 335, 435, 448 |
| Bst4CI | ACNGT | 3 cut(s) | 387, 404, 451 |
| BstC8I | GCNNGC | 6 cut(s) | 67, 149, 153, 191, 298, 312 |
| BstDEI | CTNAG | 4 cut(s) | 225, 305, 315, 328 |
| BstF5I | GGATG | 1 cut(s) | 208 |
| BstFNI | CGCG | 1 cut(s) | 131 |
| BstH2I | RGCGCY | 1 cut(s) | 18 |
| BstHHI | GCGC | 1 cut(s) | 17 |
| BstMAI | GTCTC | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 190, 293 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 1 cut(s) | 403 |
| BstUI | CGCG | 1 cut(s) | 131 |
| BstV1I | GCAGC | 2 cut(s) | 61, 364 |
| BtgZI | GCGATG | 1 cut(s) | 146 |
| BtsCI | GGATG | 1 cut(s) | 208 |
| BtsIMutI | CAGTG | 1 cut(s) | 442 |
| Cac8I | GCNNGC | 6 cut(s) | 67, 149, 153, 191, 298, 312 |
| CfoI | GCGC | 1 cut(s) | 17 |
| Cfr13I | GGNCC | 2 cut(s) | 107, 139 |
| CseI | GACGC | 2 cut(s) | 137, 233 |
| Csp6I | GTAC | 1 cut(s) | 383 |
| CviAII | CATG | 6 cut(s) | 50, 98, 197, 239, 248, 293 |
| CviQI | GTAC | 1 cut(s) | 383 |
| DdeI | CTNAG | 4 cut(s) | 225, 305, 315, 328 |
| Eco47I | GGWCC | 2 cut(s) | 107, 139 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| FaeI | CATG | 6 cut(s) | 53, 101, 200, 242, 251, 296 |
| FaiI | YATR | 7 cut(s) | 51, 99, 198, 240, 249, 294, 370 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FatI | CATG | 6 cut(s) | 49, 97, 196, 238, 247, 292 |
| FblI | GTMKAC | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 2 cut(s) | 75, 353 |
| FokI | GGATG | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 2 cut(s) | 75, 353 |
| FspBI | CTAG | 3 cut(s) | 18, 152, 215 |
| GlaI | GCGC | 1 cut(s) | 16 |
| GluI | GCNGC | 2 cut(s) | 75, 353 |
| HaeII | RGCGCY | 1 cut(s) | 18 |
| HgaI | GACGC | 2 cut(s) | 137, 233 |
| HhaI | GCGC | 1 cut(s) | 17 |
| Hin1II | CATG | 6 cut(s) | 53, 101, 200, 242, 251, 296 |
| Hin6I | GCGC | 1 cut(s) | 15 |
| HinP1I | GCGC | 1 cut(s) | 15 |
| HincII | GTYRAC | 1 cut(s) | 23 |
| HindII | GTYRAC | 1 cut(s) | 23 |
| HinfI | GANTC | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 2 cut(s) | 23, 257 |
| Hpy188I | TCNGA | 1 cut(s) | 160 |
| Hpy8I | GTNNAC | 2 cut(s) | 23, 257 |
| HpyAV | CCTTC | 1 cut(s) | 433 |
| HpyCH4III | ACNGT | 3 cut(s) | 387, 404, 451 |
| HpyCH4IV | ACGT | 1 cut(s) | 359 |
| HpyCH4V | TGCA | 5 cut(s) | 69, 77, 89, 352, 399 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 190, 293 |
| HpyF3I | CTNAG | 4 cut(s) | 225, 305, 315, 328 |
| HpySE526I | ACGT | 1 cut(s) | 359 |
| Hsp92II | CATG | 6 cut(s) | 53, 101, 200, 242, 251, 296 |
| HspAI | GCGC | 1 cut(s) | 15 |
| LmnI | GCTCC | 2 cut(s) | 94, 198 |
| Lsp1109I | GCAGC | 2 cut(s) | 61, 364 |
| MaeI | CTAG | 3 cut(s) | 18, 152, 215 |
| MaeII | ACGT | 1 cut(s) | 359 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MboII | GAAGA | 1 cut(s) | 173 |
| MfeI | CAATTG | 1 cut(s) | 347 |
| MluCI | AATT | 3 cut(s) | 347, 428, 463 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MnlI | CCTC | 4 cut(s) | 130, 166, 193, 401 |
| MseI | TTAA | 1 cut(s) | 466 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 201 |
| MspA1I | CMGCKG | 1 cut(s) | 355 |
| MunI | CAATTG | 1 cut(s) | 347 |
| MvnI | CGCG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 190, 293 |
| NheI | GCTAGC | 1 cut(s) | 151 |
| NlaIII | CATG | 6 cut(s) | 53, 101, 200, 242, 251, 296 |
| NlaIV | GGNNCC | 1 cut(s) | 194 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| NspI | RCATGY | 1 cut(s) | 53 |
| OliI | CACNNNNGTG | 1 cut(s) | 179 |
| PfeI | GAWTC | 1 cut(s) | 164 |
| PkrI | GCNGC | 2 cut(s) | 76, 354 |
| PspN4I | GGNNCC | 1 cut(s) | 194 |
| PspPI | GGNCC | 2 cut(s) | 107, 139 |
| PvuII | CAGCTG | 1 cut(s) | 355 |
| RsaI | GTAC | 1 cut(s) | 384 |
| RsaNI | GTAC | 1 cut(s) | 383 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 201 |
| SaqAI | TTAA | 1 cut(s) | 466 |
| SatI | GCNGC | 2 cut(s) | 75, 353 |
| Sau96I | GGNCC | 2 cut(s) | 107, 139 |
| ScaI | AGTACT | 1 cut(s) | 384 |
| SetI | ASST | 6 cut(s) | 76, 141, 153, 357, 362, 425 |
| SfcI | CTRYAG | 1 cut(s) | 403 |
| SinI | GGWCC | 2 cut(s) | 107, 139 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 201 |
| SmlI | CTYRAG | 1 cut(s) | 80 |
| SmoI | CTYRAG | 1 cut(s) | 80 |
| Sse9I | AATT | 3 cut(s) | 347, 428, 463 |
| SspMI | CTAG | 3 cut(s) | 18, 152, 215 |
| TaaI | ACNGT | 3 cut(s) | 387, 404, 451 |
| TaiI | ACGT | 1 cut(s) | 362 |
| TaqII | GACCGA | 1 cut(s) | 95 |
| TasI | AATT | 3 cut(s) | 347, 428, 463 |
| TatI | WGTACW | 1 cut(s) | 382 |
| TfiI | GAWTC | 1 cut(s) | 164 |
| Tru1I | TTAA | 1 cut(s) | 466 |
| Tru9I | TTAA | 1 cut(s) | 466 |
| TscAI | CASTG | 1 cut(s) | 442 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| TseI | GCWGC | 2 cut(s) | 74, 352 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 1 cut(s) | 227 |
| TspGWI | ACGGA | 1 cut(s) | 169 |
| TspRI | CASTG | 1 cut(s) | 442 |
| VpaK11BI | GGWCC | 2 cut(s) | 107, 139 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XmiI | GTMKAC | 1 cut(s) | 256 |
| XspI | CTAG | 3 cut(s) | 18, 152, 215 |
| ZrmI | AGTACT | 1 cut(s) | 384 |