Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 62 |
| AciI | CCGC | 1 cut(s) | 176 |
| AclWI | GGATC | 1 cut(s) | 93 |
| AcoI | YGGCCR | 2 cut(s) | 156, 283 |
| AfaI | GTAC | 1 cut(s) | 217 |
| AfeI | AGCGCT | 1 cut(s) | 93 |
| AgsI | TTSAA | 2 cut(s) | 77, 193 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AluBI | AGCT | 3 cut(s) | 146, 171, 240 |
| AluI | AGCT | 3 cut(s) | 146, 171, 240 |
| AlwI | GGATC | 1 cut(s) | 93 |
| Aor51HI | AGCGCT | 1 cut(s) | 93 |
| AoxI | GGCC | 3 cut(s) | 156, 224, 283 |
| AspLEI | GCGC | 1 cut(s) | 94 |
| AspS9I | GGNCC | 2 cut(s) | 263, 278 |
| AsuHPI | GGTGA | 2 cut(s) | 128, 244 |
| AvaII | GGWCC | 2 cut(s) | 263, 278 |
| BalI | TGGCCA | 1 cut(s) | 285 |
| BbvCI | CCTCAGC | 1 cut(s) | 147 |
| BccI | CCATC | 1 cut(s) | 148 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BfaI | CTAG | 2 cut(s) | 186, 267 |
| BfoI | RGCGCY | 1 cut(s) | 95 |
| BmcAI | AGTACT | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 282 |
| Bme18I | GGWCC | 2 cut(s) | 263, 278 |
| BmgT120I | GGNCC | 2 cut(s) | 263, 278 |
| BmrFI | CCNGG | 1 cut(s) | 282 |
| BmsI | GCATC | 1 cut(s) | 113 |
| Bpu10I | CCTNAGC | 1 cut(s) | 147 |
| BsaBI | GATNNNNATC | 1 cut(s) | 53 |
| Bse1I | ACTGG | 1 cut(s) | 118 |
| Bse3DI | GCAATG | 1 cut(s) | 211 |
| Bse8I | GATNNNNATC | 1 cut(s) | 53 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseGI | GGATG | 1 cut(s) | 128 |
| BseJI | GATNNNNATC | 1 cut(s) | 53 |
| BseMI | GCAATG | 1 cut(s) | 211 |
| BseMII | CTCAG | 2 cut(s) | 57, 138 |
| BseNI | ACTGG | 1 cut(s) | 118 |
| BseRI | GAGGAG | 2 cut(s) | 164, 250 |
| BshFI | GGCC | 3 cut(s) | 158, 226, 285 |
| BsiSI | CCGG | 1 cut(s) | 159 |
| BsnI | GGCC | 3 cut(s) | 158, 226, 285 |
| Bsp143I | GATC | 2 cut(s) | 54, 98 |
| BspACI | CCGC | 1 cut(s) | 176 |
| BspANI | GGCC | 3 cut(s) | 158, 226, 285 |
| BspCNI | CTCAG | 2 cut(s) | 58, 139 |
| BspPI | GGATC | 1 cut(s) | 93 |
| BsrDI | GCAATG | 1 cut(s) | 211 |
| BsrI | ACTGG | 1 cut(s) | 118 |
| BssMI | GATC | 2 cut(s) | 54, 98 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 2 cut(s) | 45, 135 |
| BstDEI | CTNAG | 2 cut(s) | 66, 147 |
| BstF5I | GGATG | 1 cut(s) | 128 |
| BstH2I | RGCGCY | 1 cut(s) | 95 |
| BstHHI | GCGC | 1 cut(s) | 94 |
| BstKTI | GATC | 2 cut(s) | 57, 101 |
| BstMBI | GATC | 2 cut(s) | 54, 98 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 143 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstSCI | CCNGG | 1 cut(s) | 280 |
| BsuRI | GGCC | 3 cut(s) | 158, 226, 285 |
| BtsCI | GGATG | 1 cut(s) | 128 |
| Cac8I | GCNNGC | 2 cut(s) | 45, 135 |
| CfoI | GCGC | 1 cut(s) | 94 |
| Cfr13I | GGNCC | 2 cut(s) | 263, 278 |
| Csp6I | GTAC | 1 cut(s) | 216 |
| CviJI | RGCY | 9 cut(s) | 43, 137, 146, 158, 171, 226, 240, 257, 285 |
| CviKI_1 | RGCY | 9 cut(s) | 43, 137, 146, 158, 171, 226, 240, 257, 285 |
| CviQI | GTAC | 1 cut(s) | 216 |
| DdeI | CTNAG | 2 cut(s) | 66, 147 |
| DpnI | GATC | 2 cut(s) | 56, 100 |
| DpnII | GATC | 2 cut(s) | 54, 98 |
| EaeI | YGGCCR | 2 cut(s) | 156, 283 |
| Eco47I | GGWCC | 2 cut(s) | 263, 278 |
| Eco47III | AGCGCT | 1 cut(s) | 93 |
| EcoO109I | RGGNCCY | 1 cut(s) | 278 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| FblI | GTMKAC | 1 cut(s) | 62 |
| FokI | GGATG | 1 cut(s) | 135 |
| FspBI | CTAG | 2 cut(s) | 186, 267 |
| GlaI | GCGC | 1 cut(s) | 93 |
| HaeII | RGCGCY | 1 cut(s) | 95 |
| HaeIII | GGCC | 3 cut(s) | 158, 226, 285 |
| HapII | CCGG | 1 cut(s) | 159 |
| HhaI | GCGC | 1 cut(s) | 94 |
| Hin6I | GCGC | 1 cut(s) | 92 |
| HinP1I | GCGC | 1 cut(s) | 92 |
| HincII | GTYRAC | 1 cut(s) | 63 |
| HindII | GTYRAC | 1 cut(s) | 63 |
| HindIII | AAGCTT | 1 cut(s) | 169 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HpaII | CCGG | 1 cut(s) | 159 |
| HphI | GGTGA | 2 cut(s) | 128, 244 |
| Hpy166II | GTNNAC | 1 cut(s) | 63 |
| Hpy188I | TCNGA | 1 cut(s) | 103 |
| Hpy188III | TCNNGA | 1 cut(s) | 261 |
| Hpy8I | GTNNAC | 1 cut(s) | 63 |
| HpyAV | CCTTC | 1 cut(s) | 237 |
| HpyCH4III | ACNGT | 1 cut(s) | 20 |
| HpyCH4V | TGCA | 2 cut(s) | 87, 126 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 143 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 147 |
| HspAI | GCGC | 1 cut(s) | 92 |
| Kzo9I | GATC | 2 cut(s) | 54, 98 |
| LmnI | GCTCC | 2 cut(s) | 143, 237 |
| LpnPI | CCDG | 7 cut(s) | 29, 99, 119, 123, 172, 246, 267 |
| LweI | GCATC | 1 cut(s) | 113 |
| MaeI | CTAG | 2 cut(s) | 186, 267 |
| MalI | GATC | 2 cut(s) | 56, 100 |
| MboI | GATC | 2 cut(s) | 54, 98 |
| MboII | GAAGA | 1 cut(s) | 25 |
| MlsI | TGGCCA | 1 cut(s) | 285 |
| MluNI | TGGCCA | 1 cut(s) | 285 |
| MlyI | GAGTC | 1 cut(s) | 113 |
| MnlI | CCTC | 3 cut(s) | 112, 142, 228 |
| Mox20I | TGGCCA | 1 cut(s) | 285 |
| MscI | TGGCCA | 1 cut(s) | 285 |
| Msp20I | TGGCCA | 1 cut(s) | 285 |
| MspI | CCGG | 1 cut(s) | 159 |
| MspR9I | CCNGG | 1 cut(s) | 282 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 143 |
| NdeII | GATC | 2 cut(s) | 54, 98 |
| PleI | GAGTC | 1 cut(s) | 112 |
| PpsI | GAGTC | 1 cut(s) | 112 |
| PpuMI | RGGWCCY | 1 cut(s) | 278 |
| Psp5II | RGGWCCY | 1 cut(s) | 278 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PspPI | GGNCC | 2 cut(s) | 263, 278 |
| PspPPI | RGGWCCY | 1 cut(s) | 278 |
| RsaI | GTAC | 1 cut(s) | 217 |
| RsaNI | GTAC | 1 cut(s) | 216 |
| SalI | GTCGAC | 1 cut(s) | 61 |
| Sau3AI | GATC | 2 cut(s) | 54, 98 |
| Sau96I | GGNCC | 2 cut(s) | 263, 278 |
| ScaI | AGTACT | 1 cut(s) | 217 |
| SchI | GAGTC | 1 cut(s) | 113 |
| ScrFI | CCNGG | 1 cut(s) | 282 |
| SetI | ASST | 6 cut(s) | 148, 173, 242, 254, 268, 280 |
| SfaNI | GCATC | 1 cut(s) | 113 |
| SinI | GGWCC | 2 cut(s) | 263, 278 |
| SsiI | CCGC | 1 cut(s) | 176 |
| SspMI | CTAG | 2 cut(s) | 186, 267 |
| StyD4I | CCNGG | 1 cut(s) | 280 |
| TaaI | ACNGT | 1 cut(s) | 20 |
| TaqI | TCGA | 3 cut(s) | 62, 97, 200 |
| TatI | WGTACW | 1 cut(s) | 215 |
| VpaK11BI | GGWCC | 2 cut(s) | 263, 278 |
| XmiI | GTMKAC | 1 cut(s) | 62 |
| XspI | CTAG | 2 cut(s) | 186, 267 |
| ZrmI | AGTACT | 1 cut(s) | 217 |