Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TFIID_20kDa | PF03847 | 457 - 524 | 7e-32 | Transcription initiation factor TFIID subunit A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 86 |
| Acc16I | TGCGCA | 1 cut(s) | 585 |
| Acc65I | GGTACC | 1 cut(s) | 647 |
| AccB1I | GGYRCC | 2 cut(s) | 647, 1742 |
| AccII | CGCG | 1 cut(s) | 334 |
| AciI | CCGC | 8 cut(s) | 334, 507, 570, 576, 633, 830, 985, 1254 |
| AclI | AACGTT | 1 cut(s) | 1645 |
| AclWI | GGATC | 1 cut(s) | 1291 |
| AcoI | YGGCCR | 3 cut(s) | 3, 532, 1258 |
| AcsI | RAATTY | 5 cut(s) | 283, 345, 712, 721, 1231 |
| AcuI | CTGAAG | 1 cut(s) | 1449 |
| AfaI | GTAC | 5 cut(s) | 649, 1251, 1312, 1607, 1635 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 194, 1769 |
| AgsI | TTSAA | 9 cut(s) | 56, 778, 943, 992, 1204, 1335, 1436, 1521, 1590 |
| AjnI | CCWGG | 6 cut(s) | 429, 664, 780, 967, 1321, 1683 |
| AleI | CACNNNNGTG | 1 cut(s) | 934 |
| Alw26I | GTCTC | 2 cut(s) | 616, 1399 |
| AlwI | GGATC | 1 cut(s) | 1291 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 968, 1027, 1813 |
| Ama87I | CYCGRG | 1 cut(s) | 516 |
| AoxI | GGCC | 6 cut(s) | 3, 532, 784, 964, 1008, 1258 |
| ApoI | RAATTY | 5 cut(s) | 283, 345, 712, 721, 1231 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1440, 1516, 1762 |
| Asp718I | GGTACC | 1 cut(s) | 647 |
| AspLEI | GCGC | 1 cut(s) | 586 |
| AspS9I | GGNCC | 3 cut(s) | 513, 784, 965 |
| AsuC2I | CCSGG | 1 cut(s) | 1581 |
| AsuHPI | GGTGA | 4 cut(s) | 82, 966, 1026, 1726 |
| AvaI | CYCGRG | 1 cut(s) | 516 |
| AvaII | GGWCC | 1 cut(s) | 513 |
| AxyI | CCTNAGG | 1 cut(s) | 1707 |
| BaeGI | GKGCMC | 1 cut(s) | 544 |
| BalI | TGGCCA | 2 cut(s) | 534, 1260 |
| BanI | GGYRCC | 2 cut(s) | 647, 1742 |
| BbsI | GAAGAC | 1 cut(s) | 1765 |
| BccI | CCATC | 4 cut(s) | 31, 121, 1019, 1663 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 208, 242 |
| BciT130I | CCWGG | 6 cut(s) | 431, 666, 782, 969, 1323, 1685 |
| BclI | TGATCA | 1 cut(s) | 1716 |
| BcnI | CCSGG | 1 cut(s) | 1581 |
| BcoDI | GTCTC | 2 cut(s) | 616, 1399 |
| BfmI | CTRYAG | 4 cut(s) | 227, 293, 1127, 1814 |
| BglII | AGATCT | 1 cut(s) | 1438 |
| BlpI | GCTNAGC | 2 cut(s) | 768, 1503 |
| Bme1390I | CCNGG | 7 cut(s) | 431, 666, 782, 969, 1323, 1581, 1685 |
| Bme18I | GGWCC | 1 cut(s) | 513 |
| BmeT110I | CYCGRG | 1 cut(s) | 516 |
| BmgT120I | GGNCC | 3 cut(s) | 513, 784, 965 |
| BmiI | GGNNCC | 6 cut(s) | 448, 514, 515, 649, 751, 1744 |
| BmrFI | CCNGG | 7 cut(s) | 431, 666, 782, 969, 1323, 1581, 1685 |
| BmrI | ACTGGG | 1 cut(s) | 1730 |
| BmsI | GCATC | 9 cut(s) | 68, 903, 1057, 1141, 1233, 1285, 1313, 1371, 1800 |
| BmuI | ACTGGG | 1 cut(s) | 1730 |
| BpiI | GAAGAC | 1 cut(s) | 1765 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 31 |
| Bpu10I | CCTNAGC | 1 cut(s) | 754 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 768, 1503 |
| BpuMI | CCSGG | 1 cut(s) | 1581 |
| Bsa29I | ATCGAT | 1 cut(s) | 1470 |
| BsaJI | CCNNGG | 7 cut(s) | 643, 781, 967, 1238, 1339, 1533, 1768 |
| BsaWI | WCCGGW | 1 cut(s) | 449 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 194, 1769 |
| Bse1I | ACTGG | 3 cut(s) | 1032, 1736, 1804 |
| Bse21I | CCTNAGG | 1 cut(s) | 1707 |
| Bse3DI | GCAATG | 1 cut(s) | 699 |
| BseBI | CCWGG | 6 cut(s) | 431, 666, 782, 969, 1323, 1685 |
| BseCI | ATCGAT | 1 cut(s) | 1470 |
| BseDI | CCNNGG | 7 cut(s) | 643, 781, 967, 1238, 1339, 1533, 1768 |
| BseGI | GGATG | 5 cut(s) | 113, 149, 848, 1248, 1543 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 194, 1769 |
| BseMI | GCAATG | 1 cut(s) | 699 |
| BseMII | CTCAG | 7 cut(s) | 269, 491, 782, 887, 905, 1055, 1820 |
| BseNI | ACTGG | 3 cut(s) | 1032, 1736, 1804 |
| BseRI | GAGGAG | 1 cut(s) | 129 |
| BseSI | GKGCMC | 1 cut(s) | 544 |
| BseYI | CCCAGC | 1 cut(s) | 807 |
| BsgI | GTGCAG | 2 cut(s) | 269, 1532 |
| Bsh1236I | CGCG | 1 cut(s) | 334 |
| BshFI | GGCC | 6 cut(s) | 5, 534, 786, 966, 1010, 1260 |
| BshNI | GGYRCC | 2 cut(s) | 647, 1742 |
| BshVI | ATCGAT | 1 cut(s) | 1470 |
| BsiHKCI | CYCGRG | 1 cut(s) | 516 |
| BsiSI | CCGG | 2 cut(s) | 450, 1581 |
| BslFI | GGGAC | 2 cut(s) | 499, 790 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 194, 1769 |
| BsmAI | GTCTC | 2 cut(s) | 616, 1399 |
| BsmFI | GGGAC | 2 cut(s) | 499, 790 |
| BsnI | GGCC | 6 cut(s) | 5, 534, 786, 966, 1010, 1260 |
| BsoBI | CYCGRG | 1 cut(s) | 516 |
| Bsp1286I | GDGCHC | 1 cut(s) | 544 |
| Bsp1407I | TGTACA | 1 cut(s) | 1633 |
| Bsp143I | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 768, 1503 |
| BspACI | CCGC | 8 cut(s) | 334, 507, 570, 576, 633, 830, 985, 1254 |
| BspANI | GGCC | 6 cut(s) | 5, 534, 786, 966, 1010, 1260 |
| BspCNI | CTCAG | 7 cut(s) | 268, 490, 781, 886, 904, 1054, 1819 |
| BspDI | ATCGAT | 1 cut(s) | 1470 |
| BspFNI | CGCG | 1 cut(s) | 334 |
| BspLI | GGNNCC | 6 cut(s) | 448, 514, 515, 649, 751, 1744 |
| BspMAI | CTGCAG | 3 cut(s) | 231, 297, 1818 |
| BspPI | GGATC | 1 cut(s) | 1291 |
| BspT107I | GGYRCC | 2 cut(s) | 647, 1742 |
| BsrDI | GCAATG | 1 cut(s) | 699 |
| BsrGI | TGTACA | 1 cut(s) | 1633 |
| BsrI | ACTGG | 3 cut(s) | 1032, 1736, 1804 |
| BssECI | CCNNGG | 7 cut(s) | 643, 781, 967, 1238, 1339, 1533, 1768 |
| BssMI | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| BssT1I | CCWWGG | 5 cut(s) | 643, 1238, 1339, 1533, 1768 |
| Bst2UI | CCWGG | 6 cut(s) | 431, 666, 782, 969, 1323, 1685 |
| Bst4CI | ACNGT | 5 cut(s) | 193, 936, 1083, 1782, 1830 |
| Bst6I | CTCTTC | 2 cut(s) | 1367, 1590 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 310, 838 |
| BstAUI | TGTACA | 1 cut(s) | 1633 |
| BstC8I | GCNNGC | 9 cut(s) | 311, 380, 822, 888, 906, 954, 1008, 1258, 1492 |
| BstF5I | GGATG | 5 cut(s) | 113, 149, 848, 1248, 1543 |
| BstFNI | CGCG | 1 cut(s) | 334 |
| BstHHI | GCGC | 1 cut(s) | 586 |
| BstKTI | GATC | 4 cut(s) | 320, 1286, 1441, 1719 |
| BstMAI | GTCTC | 2 cut(s) | 616, 1399 |
| BstMBI | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| BstNI | CCWGG | 6 cut(s) | 431, 666, 782, 969, 1323, 1685 |
| BstNSI | RCATGY | 3 cut(s) | 313, 860, 1494 |
| BstSCI | CCNGG | 7 cut(s) | 429, 664, 780, 967, 1321, 1579, 1683 |
| BstSFI | CTRYAG | 4 cut(s) | 227, 293, 1127, 1814 |
| BstSLI | GKGCMC | 1 cut(s) | 544 |
| BstUI | CGCG | 1 cut(s) | 334 |
| BstV2I | GAAGAC | 1 cut(s) | 1765 |
| BstX2I | RGATCY | 1 cut(s) | 1438 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1367, 1753, 1799 |
| BstYI | RGATCY | 1 cut(s) | 1438 |
| Bsu15I | ATCGAT | 1 cut(s) | 1470 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1707 |
| BsuRI | GGCC | 6 cut(s) | 5, 534, 786, 966, 1010, 1260 |
| BsuTUI | ATCGAT | 1 cut(s) | 1470 |
| BtgZI | GCGATG | 2 cut(s) | 9, 1662 |
| BtsCI | GGATG | 5 cut(s) | 113, 149, 848, 1248, 1543 |
| BtsIMutI | CAGTG | 2 cut(s) | 941, 1482 |
| Cac8I | GCNNGC | 9 cut(s) | 311, 380, 822, 888, 906, 954, 1008, 1258, 1492 |
| CaiI | CAGNNNCTG | 3 cut(s) | 968, 1027, 1813 |
| CfoI | GCGC | 1 cut(s) | 586 |
| Cfr13I | GGNCC | 3 cut(s) | 513, 784, 965 |
| ClaI | ATCGAT | 1 cut(s) | 1470 |
| CseI | GACGC | 1 cut(s) | 1672 |
| Csp6I | GTAC | 5 cut(s) | 648, 1250, 1311, 1606, 1634 |
| CviAII | CATG | 8 cut(s) | 310, 400, 553, 718, 857, 1060, 1066, 1491 |
| CviQI | GTAC | 5 cut(s) | 648, 1250, 1311, 1606, 1634 |
| DpnI | GATC | 4 cut(s) | 319, 1285, 1440, 1718 |
| DpnII | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| EaeI | YGGCCR | 3 cut(s) | 3, 532, 1258 |
| Eam1104I | CTCTTC | 2 cut(s) | 1367, 1590 |
| EarI | CTCTTC | 2 cut(s) | 1367, 1590 |
| Eco130I | CCWWGG | 5 cut(s) | 643, 1238, 1339, 1533, 1768 |
| Eco47I | GGWCC | 1 cut(s) | 513 |
| Eco57I | CTGAAG | 1 cut(s) | 1449 |
| Eco81I | CCTNAGG | 1 cut(s) | 1707 |
| Eco88I | CYCGRG | 1 cut(s) | 516 |
| EcoO109I | RGGNCCY | 2 cut(s) | 513, 965 |
| EcoRI | GAATTC | 2 cut(s) | 712, 1231 |
| EcoRII | CCWGG | 6 cut(s) | 429, 664, 780, 967, 1321, 1683 |
| EcoT14I | CCWWGG | 5 cut(s) | 643, 1238, 1339, 1533, 1768 |
| EcoT22I | ATGCAT | 1 cut(s) | 862 |
| ErhI | CCWWGG | 5 cut(s) | 643, 1238, 1339, 1533, 1768 |
| FaeI | CATG | 8 cut(s) | 313, 403, 556, 721, 860, 1063, 1069, 1494 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1428, 1460 |
| FaqI | GGGAC | 2 cut(s) | 499, 790 |
| FatI | CATG | 8 cut(s) | 309, 399, 552, 717, 856, 1059, 1065, 1490 |
| FauI | CCCGC | 3 cut(s) | 500, 626, 1261 |
| FbaI | TGATCA | 1 cut(s) | 1716 |
| FokI | GGATG | 5 cut(s) | 100, 136, 835, 1255, 1550 |
| FspI | TGCGCA | 1 cut(s) | 585 |
| GlaI | GCGC | 1 cut(s) | 585 |
| GsaI | CCCAGC | 1 cut(s) | 811 |
| HaeIII | GGCC | 6 cut(s) | 5, 534, 786, 966, 1010, 1260 |
| HapII | CCGG | 2 cut(s) | 450, 1581 |
| HgaI | GACGC | 1 cut(s) | 1672 |
| HhaI | GCGC | 1 cut(s) | 586 |
| Hin1II | CATG | 8 cut(s) | 313, 403, 556, 721, 860, 1063, 1069, 1494 |
| Hin6I | GCGC | 1 cut(s) | 584 |
| HinP1I | GCGC | 1 cut(s) | 584 |
| HpaII | CCGG | 2 cut(s) | 450, 1581 |
| HphI | GGTGA | 4 cut(s) | 82, 966, 1026, 1726 |
| Hpy166II | GTNNAC | 1 cut(s) | 271 |
| Hpy188I | TCNGA | 9 cut(s) | 197, 258, 369, 443, 894, 1429, 1721, 1777, 1809 |
| Hpy188III | TCNNGA | 1 cut(s) | 516 |
| Hpy8I | GTNNAC | 1 cut(s) | 271 |
| Hpy99I | CGWCG | 2 cut(s) | 197, 328 |
| HpyAV | CCTTC | 5 cut(s) | 987, 998, 1210, 1410, 1773 |
| HpyCH4III | ACNGT | 5 cut(s) | 193, 936, 1083, 1782, 1830 |
| HpyCH4IV | ACGT | 1 cut(s) | 1645 |
| HpySE526I | ACGT | 1 cut(s) | 1645 |
| Hsp92II | CATG | 8 cut(s) | 313, 403, 556, 721, 860, 1063, 1069, 1494 |
| HspAI | GCGC | 1 cut(s) | 584 |
| KflI | GGGWCCC | 1 cut(s) | 513 |
| KpnI | GGTACC | 1 cut(s) | 651 |
| Ksp22I | TGATCA | 1 cut(s) | 1716 |
| Kzo9I | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| LmnI | GCTCC | 2 cut(s) | 452, 749 |
| LweI | GCATC | 9 cut(s) | 68, 903, 1057, 1141, 1233, 1285, 1313, 1371, 1800 |
| MaeII | ACGT | 1 cut(s) | 1645 |
| MaeIII | GTNAC | 2 cut(s) | 1083, 1477 |
| MalI | GATC | 4 cut(s) | 319, 1285, 1440, 1718 |
| MboI | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| MboII | GAAGA | 7 cut(s) | 1006, 1384, 1433, 1448, 1509, 1607, 1770 |
| MfeI | CAATTG | 2 cut(s) | 800, 1109 |
| MflI | RGATCY | 1 cut(s) | 1438 |
| MhlI | GDGCHC | 1 cut(s) | 544 |
| MlsI | TGGCCA | 2 cut(s) | 534, 1260 |
| MluNI | TGGCCA | 2 cut(s) | 534, 1260 |
| MlyI | GAGTC | 3 cut(s) | 247, 469, 1538 |
| MmeI | TCCRAC | 2 cut(s) | 175, 1401 |
| Mox20I | TGGCCA | 2 cut(s) | 534, 1260 |
| Mph1103I | ATGCAT | 1 cut(s) | 862 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1440, 1516, 1762 |
| MscI | TGGCCA | 2 cut(s) | 534, 1260 |
| MseI | TTAA | 2 cut(s) | 264, 1277 |
| MslI | CAYNNNNRTG | 3 cut(s) | 934, 1064, 1489 |
| Msp20I | TGGCCA | 2 cut(s) | 534, 1260 |
| MspA1I | CMGCKG | 6 cut(s) | 226, 292, 572, 581, 607, 1256 |
| MspI | CCGG | 2 cut(s) | 450, 1581 |
| MspR9I | CCNGG | 7 cut(s) | 431, 666, 782, 969, 1323, 1581, 1685 |
| MunI | CAATTG | 2 cut(s) | 800, 1109 |
| MvaI | CCWGG | 6 cut(s) | 431, 666, 782, 969, 1323, 1685 |
| MvnI | CGCG | 1 cut(s) | 334 |
| NciI | CCSGG | 1 cut(s) | 1581 |
| NdeII | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| NlaIII | CATG | 8 cut(s) | 313, 403, 556, 721, 860, 1063, 1069, 1494 |
| NlaIV | GGNNCC | 6 cut(s) | 448, 514, 515, 649, 751, 1744 |
| NmeAIII | GCCGAG | 2 cut(s) | 31, 645 |
| NmuCI | GTSAC | 1 cut(s) | 1477 |
| NsbI | TGCGCA | 1 cut(s) | 585 |
| NsiI | ATGCAT | 1 cut(s) | 862 |
| NspI | RCATGY | 3 cut(s) | 313, 860, 1494 |
| OliI | CACNNNNGTG | 1 cut(s) | 934 |
| PaeI | GCATGC | 2 cut(s) | 313, 1494 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1440, 1516, 1762 |
| PfeI | GAWTC | 8 cut(s) | 220, 364, 457, 919, 1406, 1424, 1472, 1673 |
| PflFI | GACNNNGTC | 1 cut(s) | 1391 |
| PfoI | TCCNGGA | 2 cut(s) | 664, 1579 |
| PleI | GAGTC | 3 cut(s) | 247, 469, 1537 |
| PpsI | GAGTC | 3 cut(s) | 247, 469, 1537 |
| PpuMI | RGGWCCY | 1 cut(s) | 513 |
| PsiI | TTATAA | 1 cut(s) | 86 |
| Psp1406I | AACGTT | 1 cut(s) | 1645 |
| Psp5II | RGGWCCY | 1 cut(s) | 513 |
| Psp6I | CCWGG | 6 cut(s) | 429, 664, 780, 967, 1321, 1683 |
| PspFI | CCCAGC | 1 cut(s) | 807 |
| PspGI | CCWGG | 6 cut(s) | 429, 664, 780, 967, 1321, 1683 |
| PspN4I | GGNNCC | 6 cut(s) | 448, 514, 515, 649, 751, 1744 |
| PspPI | GGNCC | 3 cut(s) | 513, 784, 965 |
| PspPPI | RGGWCCY | 1 cut(s) | 513 |
| PstI | CTGCAG | 3 cut(s) | 231, 297, 1818 |
| PstNI | CAGNNNCTG | 3 cut(s) | 968, 1027, 1813 |
| PsuI | RGATCY | 1 cut(s) | 1438 |
| PsyI | GACNNNGTC | 1 cut(s) | 1391 |
| PvuII | CAGCTG | 4 cut(s) | 226, 292, 581, 607 |
| RsaI | GTAC | 5 cut(s) | 649, 1251, 1312, 1607, 1635 |
| RsaNI | GTAC | 5 cut(s) | 648, 1250, 1311, 1606, 1634 |
| RseI | CAYNNNNRTG | 3 cut(s) | 934, 1064, 1489 |
| SaqAI | TTAA | 2 cut(s) | 264, 1277 |
| Sau3AI | GATC | 4 cut(s) | 317, 1283, 1438, 1716 |
| Sau96I | GGNCC | 3 cut(s) | 513, 784, 965 |
| SchI | GAGTC | 3 cut(s) | 247, 469, 1538 |
| ScrFI | CCNGG | 7 cut(s) | 431, 666, 782, 969, 1323, 1581, 1685 |
| SduI | GDGCHC | 1 cut(s) | 544 |
| SfaNI | GCATC | 9 cut(s) | 68, 903, 1057, 1141, 1233, 1285, 1313, 1371, 1800 |
| SfcI | CTRYAG | 4 cut(s) | 227, 293, 1127, 1814 |
| SinI | GGWCC | 1 cut(s) | 513 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 934, 1064, 1489 |
| SphI | GCATGC | 2 cut(s) | 313, 1494 |
| SsiI | CCGC | 8 cut(s) | 334, 507, 570, 576, 633, 830, 985, 1254 |
| StyD4I | CCNGG | 7 cut(s) | 429, 664, 780, 967, 1321, 1579, 1683 |
| StyI | CCWWGG | 5 cut(s) | 643, 1238, 1339, 1533, 1768 |
| TaaI | ACNGT | 5 cut(s) | 193, 936, 1083, 1782, 1830 |
| TaiI | ACGT | 1 cut(s) | 1648 |
| TaqI | TCGA | 3 cut(s) | 281, 326, 1470 |
| TatI | WGTACW | 1 cut(s) | 1633 |
| TauI | GCSGC | 3 cut(s) | 337, 572, 578 |
| TfiI | GAWTC | 8 cut(s) | 220, 364, 457, 919, 1406, 1424, 1472, 1673 |
| Tru1I | TTAA | 2 cut(s) | 264, 1277 |
| Tru9I | TTAA | 2 cut(s) | 264, 1277 |
| TscAI | CASTG | 2 cut(s) | 941, 1482 |
| TseFI | GTSAC | 1 cut(s) | 1477 |
| Tsp45I | GTSAC | 1 cut(s) | 1477 |
| TspDTI | ATGAA | 6 cut(s) | 725, 734, 881, 969, 1082, 1456 |
| TspGWI | ACGGA | 2 cut(s) | 312, 1675 |
| TspRI | CASTG | 2 cut(s) | 941, 1482 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1391 |
| VpaK11BI | GGWCC | 1 cut(s) | 513 |
| XapI | RAATTY | 5 cut(s) | 283, 345, 712, 721, 1231 |
| XceI | RCATGY | 3 cut(s) | 313, 860, 1494 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1440, 1516, 1762 |
| Zsp2I | ATGCAT | 1 cut(s) | 862 |