Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AciI | CCGC | 5 cut(s) | 65, 68, 77, 460, 466 |
| AclWI | GGATC | 2 cut(s) | 457, 470 |
| AcoI | YGGCCR | 2 cut(s) | 36, 406 |
| AcsI | RAATTY | 1 cut(s) | 419 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 495 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 441, 475, 489, 490 |
| AgeI | ACCGGT | 1 cut(s) | 17 |
| AgsI | TTSAA | 3 cut(s) | 148, 224, 229 |
| AjnI | CCWGG | 1 cut(s) | 468 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 447, 479 |
| Alw26I | GTCTC | 1 cut(s) | 135 |
| AlwI | GGATC | 2 cut(s) | 457, 470 |
| Ama87I | CYCGRG | 1 cut(s) | 536 |
| AoxI | GGCC | 4 cut(s) | 36, 266, 406, 432 |
| ApeKI | GCWGC | 1 cut(s) | 532 |
| ApoI | RAATTY | 1 cut(s) | 419 |
| AsiGI | ACCGGT | 1 cut(s) | 17 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 157 |
| AspLEI | GCGC | 2 cut(s) | 7, 114 |
| AspS9I | GGNCC | 3 cut(s) | 122, 266, 433 |
| AsuC2I | CCSGG | 1 cut(s) | 141 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| AvaI | CYCGRG | 1 cut(s) | 536 |
| AvaII | GGWCC | 1 cut(s) | 122 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BamHI | GGATCC | 1 cut(s) | 462 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 189 |
| BbvI | GCAGC | 1 cut(s) | 544 |
| BccI | CCATC | 2 cut(s) | 305, 492 |
| BceAI | ACGGC | 2 cut(s) | 90, 253 |
| BciT130I | CCWGG | 1 cut(s) | 470 |
| BciVI | GTATCC | 1 cut(s) | 472 |
| BclI | TGATCA | 1 cut(s) | 424 |
| BcnI | CCSGG | 1 cut(s) | 141 |
| BcoDI | GTCTC | 1 cut(s) | 135 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BfmI | CTRYAG | 1 cut(s) | 277 |
| BfoI | RGCGCY | 2 cut(s) | 8, 115 |
| BfuI | GTATCC | 1 cut(s) | 472 |
| BglII | AGATCT | 1 cut(s) | 330 |
| BisI | GCNGC | 3 cut(s) | 66, 78, 533 |
| BlsI | GCNGC | 3 cut(s) | 67, 79, 534 |
| Bme1390I | CCNGG | 2 cut(s) | 141, 470 |
| Bme18I | GGWCC | 1 cut(s) | 122 |
| BmeT110I | CYCGRG | 1 cut(s) | 536 |
| BmgT120I | GGNCC | 3 cut(s) | 122, 266, 433 |
| BmiI | GGNNCC | 2 cut(s) | 6, 464 |
| BmrFI | CCNGG | 2 cut(s) | 141, 470 |
| BmsI | GCATC | 2 cut(s) | 190, 495 |
| BpmI | CTGGAG | 2 cut(s) | 225, 565 |
| BpuMI | CCSGG | 1 cut(s) | 141 |
| BsaBI | GATNNNNATC | 1 cut(s) | 483 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 139, 269, 525 |
| BsaWI | WCCGGW | 1 cut(s) | 17 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 441, 475, 489, 490 |
| Bse118I | RCCGGY | 2 cut(s) | 17, 355 |
| Bse8I | GATNNNNATC | 1 cut(s) | 483 |
| BseBI | CCWGG | 1 cut(s) | 470 |
| BseDI | CCNNGG | 4 cut(s) | 48, 139, 269, 525 |
| BseGI | GGATG | 1 cut(s) | 510 |
| BseJI | GATNNNNATC | 1 cut(s) | 483 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 441, 475, 489, 490 |
| BseMII | CTCAG | 2 cut(s) | 204, 580 |
| BseX3I | CGGCCG | 1 cut(s) | 36 |
| BseXI | GCAGC | 1 cut(s) | 544 |
| BsgI | GTGCAG | 1 cut(s) | 551 |
| Bsh1285I | CGRYCG | 1 cut(s) | 39 |
| BshFI | GGCC | 4 cut(s) | 38, 268, 408, 434 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshTI | ACCGGT | 1 cut(s) | 17 |
| BsiEI | CGRYCG | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 1 cut(s) | 536 |
| BsiSI | CCGG | 4 cut(s) | 18, 35, 141, 356 |
| BslFI | GGGAC | 1 cut(s) | 85 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 441, 475, 489, 490 |
| BsmAI | GTCTC | 1 cut(s) | 135 |
| BsmFI | GGGAC | 1 cut(s) | 85 |
| BsnI | GGCC | 4 cut(s) | 38, 268, 408, 434 |
| BsoBI | CYCGRG | 1 cut(s) | 536 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| Bsp143I | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| BspACI | CCGC | 5 cut(s) | 65, 68, 77, 460, 466 |
| BspANI | GGCC | 4 cut(s) | 38, 268, 408, 434 |
| BspCNI | CTCAG | 2 cut(s) | 203, 579 |
| BspLI | GGNNCC | 2 cut(s) | 6, 464 |
| BspPI | GGATC | 2 cut(s) | 457, 470 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrFI | RCCGGY | 2 cut(s) | 17, 355 |
| BssAI | RCCGGY | 2 cut(s) | 17, 355 |
| BssECI | CCNNGG | 4 cut(s) | 48, 139, 269, 525 |
| BssMI | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 2 cut(s) | 48, 525 |
| Bst2UI | CCWGG | 1 cut(s) | 470 |
| Bst4CI | ACNGT | 1 cut(s) | 95 |
| Bst6I | CTCTTC | 3 cut(s) | 49, 444, 526 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 116 |
| BstDEI | CTNAG | 2 cut(s) | 190, 566 |
| BstDSI | CCRYGG | 1 cut(s) | 269 |
| BstF5I | GGATG | 1 cut(s) | 510 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 115 |
| BstHHI | GCGC | 2 cut(s) | 7, 114 |
| BstKTI | GATC | 6 cut(s) | 168, 211, 333, 427, 465, 572 |
| BstMAI | GTCTC | 1 cut(s) | 135 |
| BstMBI | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| BstMCI | CGRYCG | 1 cut(s) | 39 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 74, 265 |
| BstNI | CCWGG | 1 cut(s) | 470 |
| BstSCI | CCNGG | 2 cut(s) | 139, 468 |
| BstSFI | CTRYAG | 1 cut(s) | 277 |
| BstV1I | GCAGC | 1 cut(s) | 544 |
| BstX2I | RGATCY | 2 cut(s) | 330, 462 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 203 |
| BstYI | RGATCY | 2 cut(s) | 330, 462 |
| BstZI | CGGCCG | 1 cut(s) | 36 |
| BsuI | GTATCC | 1 cut(s) | 472 |
| BsuRI | GGCC | 4 cut(s) | 38, 268, 408, 434 |
| BtgI | CCRYGG | 1 cut(s) | 269 |
| BtsCI | GGATG | 1 cut(s) | 510 |
| Cac8I | GCNNGC | 1 cut(s) | 116 |
| CfoI | GCGC | 2 cut(s) | 7, 114 |
| Cfr10I | RCCGGY | 2 cut(s) | 17, 355 |
| Cfr13I | GGNCC | 3 cut(s) | 122, 266, 433 |
| Csp6I | GTAC | 1 cut(s) | 494 |
| CspAI | ACCGGT | 1 cut(s) | 17 |
| CviAII | CATG | 3 cut(s) | 197, 233, 501 |
| CviJI | RGCY | 9 cut(s) | 29, 38, 187, 268, 321, 396, 408, 434, 535 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 38, 187, 268, 321, 396, 408, 434, 535 |
| CviQI | GTAC | 1 cut(s) | 494 |
| DdeI | CTNAG | 2 cut(s) | 190, 566 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 6 cut(s) | 167, 210, 332, 426, 464, 571 |
| DpnII | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| EaeI | YGGCCR | 2 cut(s) | 36, 406 |
| EagI | CGGCCG | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 3 cut(s) | 49, 444, 526 |
| EarI | CTCTTC | 3 cut(s) | 49, 444, 526 |
| EciI | GGCGGA | 1 cut(s) | 455 |
| EclXI | CGGCCG | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 2 cut(s) | 48, 525 |
| Eco24I | GRGCYC | 1 cut(s) | 189 |
| Eco47I | GGWCC | 1 cut(s) | 122 |
| Eco52I | CGGCCG | 1 cut(s) | 36 |
| Eco88I | CYCGRG | 1 cut(s) | 536 |
| EcoRII | CCWGG | 1 cut(s) | 468 |
| EcoT14I | CCWWGG | 2 cut(s) | 48, 525 |
| EcoT38I | GRGCYC | 1 cut(s) | 189 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| ErhI | CCWWGG | 2 cut(s) | 48, 525 |
| FaeI | CATG | 3 cut(s) | 200, 236, 504 |
| FaiI | YATR | 7 cut(s) | 102, 104, 198, 218, 234, 309, 502 |
| FaqI | GGGAC | 1 cut(s) | 85 |
| FatI | CATG | 3 cut(s) | 196, 232, 500 |
| FauI | CCCGC | 1 cut(s) | 61 |
| FbaI | TGATCA | 1 cut(s) | 424 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 78, 533 |
| FokI | GGATG | 1 cut(s) | 517 |
| FriOI | GRGCYC | 1 cut(s) | 189 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 78, 533 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GlaI | GCGC | 2 cut(s) | 6, 113 |
| GluI | GCNGC | 3 cut(s) | 66, 78, 533 |
| GsuI | CTGGAG | 2 cut(s) | 225, 565 |
| HaeII | RGCGCY | 2 cut(s) | 8, 115 |
| HaeIII | GGCC | 4 cut(s) | 38, 268, 408, 434 |
| HapII | CCGG | 4 cut(s) | 18, 35, 141, 356 |
| HhaI | GCGC | 2 cut(s) | 7, 114 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 3 cut(s) | 200, 236, 504 |
| Hin6I | GCGC | 2 cut(s) | 5, 112 |
| HinP1I | GCGC | 2 cut(s) | 5, 112 |
| HinfI | GANTC | 4 cut(s) | 41, 174, 539, 578 |
| HpaII | CCGG | 4 cut(s) | 18, 35, 141, 356 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy188I | TCNGA | 3 cut(s) | 444, 489, 569 |
| Hpy188III | TCNNGA | 1 cut(s) | 582 |
| Hpy99I | CGWCG | 1 cut(s) | 444 |
| HpyAV | CCTTC | 2 cut(s) | 257, 446 |
| HpyCH4III | ACNGT | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 4 cut(s) | 85, 259, 341, 532 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 74, 265 |
| HpyF3I | CTNAG | 2 cut(s) | 190, 566 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 3 cut(s) | 200, 236, 504 |
| HspAI | GCGC | 2 cut(s) | 5, 112 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 1 cut(s) | 424 |
| Kzo9I | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 544 |
| LweI | GCATC | 2 cut(s) | 190, 495 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeIII | GTNAC | 2 cut(s) | 245, 575 |
| MalI | GATC | 6 cut(s) | 167, 210, 332, 426, 464, 571 |
| MboI | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| MboII | GAAGA | 4 cut(s) | 36, 153, 461, 513 |
| MflI | RGATCY | 2 cut(s) | 330, 462 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 2 cut(s) | 224, 419 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 35, 548, 572 |
| MmeI | TCCRAC | 2 cut(s) | 422, 456 |
| MnlI | CCTC | 3 cut(s) | 438, 445, 483 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| MroXI | GAANNNNTTC | 1 cut(s) | 157 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MspA1I | CMGCKG | 1 cut(s) | 460 |
| MspI | CCGG | 4 cut(s) | 18, 35, 141, 356 |
| MspR9I | CCNGG | 2 cut(s) | 141, 470 |
| MvaI | CCWGG | 1 cut(s) | 470 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 74, 265 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NciI | CCSGG | 1 cut(s) | 141 |
| NdeII | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| NlaIII | CATG | 3 cut(s) | 200, 236, 504 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 464 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 493 |
| PdmI | GAANNNNTTC | 1 cut(s) | 157 |
| PfeI | GAWTC | 1 cut(s) | 174 |
| PinAI | ACCGGT | 1 cut(s) | 17 |
| PkrI | GCNGC | 3 cut(s) | 67, 79, 534 |
| PleI | GAGTC | 3 cut(s) | 35, 547, 572 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PpsI | GAGTC | 3 cut(s) | 35, 547, 572 |
| Psp6I | CCWGG | 1 cut(s) | 468 |
| PspGI | CCWGG | 1 cut(s) | 468 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 464 |
| PspPI | GGNCC | 3 cut(s) | 122, 266, 433 |
| PsuI | RGATCY | 2 cut(s) | 330, 462 |
| RsaI | GTAC | 1 cut(s) | 495 |
| RsaNI | GTAC | 1 cut(s) | 494 |
| SatI | GCNGC | 3 cut(s) | 66, 78, 533 |
| Sau3AI | GATC | 6 cut(s) | 165, 208, 330, 424, 462, 569 |
| Sau96I | GGNCC | 3 cut(s) | 122, 266, 433 |
| SchI | GAGTC | 3 cut(s) | 35, 548, 572 |
| ScrFI | CCNGG | 2 cut(s) | 141, 470 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 4 cut(s) | 54, 64, 304, 352 |
| SfaNI | GCATC | 2 cut(s) | 190, 495 |
| SfcI | CTRYAG | 1 cut(s) | 277 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| SinI | GGWCC | 1 cut(s) | 122 |
| Sse9I | AATT | 2 cut(s) | 224, 419 |
| SsiI | CCGC | 5 cut(s) | 65, 68, 77, 460, 466 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspI | AATATT | 1 cut(s) | 561 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StyD4I | CCNGG | 2 cut(s) | 139, 468 |
| StyI | CCWWGG | 2 cut(s) | 48, 525 |
| TaaI | ACNGT | 1 cut(s) | 95 |
| TaqI | TCGA | 1 cut(s) | 164 |
| TasI | AATT | 2 cut(s) | 224, 419 |
| TauI | GCSGC | 2 cut(s) | 68, 80 |
| TfiI | GAWTC | 1 cut(s) | 174 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| TseI | GCWGC | 1 cut(s) | 532 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 122 |
| XapI | RAATTY | 1 cut(s) | 419 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 550 |
| XmnI | GAANNNNTTC | 1 cut(s) | 157 |
| XspI | CTAG | 1 cut(s) | 59 |