Rmu_ssc0000162.1_g000015

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000162.1
OG0000049
Physical Location & Seq
Forward (+)
100560 .. 104170
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000162.1_g000015.1.cds

Sequence Viewer

Length: 2055 bp
atgcctgcatcgcatataggcgagacaactggaataggacagaagcttgacttgcctagtccatttcaaagctttatagagggatgttttgtcaatggtgcattcagattcaagggcttgcagacaacaatcttaccctttatagctcgaaatttgtttggcaccaaggaagctaatatactgtgcaggccagtggtcattcgcaatgatgacttgagatcctttgatggtgaatcaaatgcactagcgctagttcctatgaatgctaaacaatctttgctctctatgattgatgcatcaaagtccttgaagtgtgggagcggtgcggtgcatgatactgacctaatgaagaaggtaaagatacaggtaaagataccggctgagcatctcacagctaagtctcttgggatggtggaaacaccgaatggtatgttggtgtttggagaaggtatgaaatcaaagaaggaagcccaagctaaacaaatggaagtgaagaaagaaaaaggtcgtcctttaggttctaagaataagaaccctcccaaatttaagaaagtgtttgatgaagagccgtttctgctagggtttctccgtgtaggtttcttcactgataaaaattccaaatctcacttctctcctttagtccttatcttttcgatggctgacatccattttgagactgaggaggtagggctacagatggactcgagcctcgtggggttgggggctgcagcgtttcaggatgggaactggtgcatggtgggccgtttgttggcgccgaaagcaaggttgtccggtttcaagggtactatttccacgatctggaatatcagatcaggacggaccattcaggatgcaggggagcgttttgtgttccaatttgagaatgaaggtgtgcgcaaccggatcttgcgtggcggtccctggttttatcggaatactatgctggtggtgggagaatatgatggtctcagtccagtggaggaggtgcctctaaatctgatggaggcctgggtggctgtgaaggggcttccttttgctctgaggaacaaggcggcactgaccatggtgggtgcttctttggggatgatggttcgagtggatcaaaatgctttgaagaggaaagaagatgaacagcgcatcaaggtggtgtttgatgttcggcgtcggatccggaaggttaagggtttttgccgggactgtgggcgttttgttcatgatgccactggttgtgacaagctcttaatccgagagaatgaggaaatccaagctgggccgacggcaggagccatggccgggttatcgttgacctcggggctagagactggtctattcttgaaggacaagtctctgagtttgagcaacgtcgatctggaagttgggtcggggtctgttggacaaggtgtcgtggtggtagatggtgagaagggcgaccaggtaatgtcgaaacctgtcgagttcatgccttccatgctgtctggcatacctagggttttggaaccggtgatccacactatggggaacttgaagctgcgaggtccaatgctggttgatccgcaagagttcgccccacagtccgcgaccttgatccctaggttatctgcgacaggtaacgaggtttcaagaatggagttttcctccatgcatttggtcccggcagggagaaagagaaaggctgcattgtctgtggatcgccttaggaagaagtacttaactttcccagagtcgatgctggaggttggggagagtgtctctttgattgtccaacacaagaatggcaaacttctggtctcaccaaagaagaagaaaggtggacggcctaagggaagcaaaaataagattaagaatgcagatgaacaagaagtgaagaagatacgtaagtataagcgtagagggaaaattttgaattttgattcctcaagtgaagcgttggatcctgccactgtggaggagttggggactatgccgataggggaagaggagtttgtgaaggagctccctattatggagggagggatggaaggtgacgtgtcaccttctaggactagtttaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

684

Amino Acids

75.19

Weight (kDa)

9.47

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 896
AccB1I GGYRCC 3 cut(s) 161, 772, 985
AccB7I CCANNNNNTGG 2 cut(s) 819, 1513
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 1 cut(s) 1577
AccIII TCCGGA 1 cut(s) 1170
AciI CCGC 6 cut(s) 321, 326, 915, 1052, 1553, 1575
AcoI YGGCCR 1 cut(s) 1290
AcsI RAATTY 5 cut(s) 151, 542, 613, 1896, 1903
AcyI GRCGYC 2 cut(s) 773, 1162
AfaI GTAC 2 cut(s) 805, 1706
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 6 cut(s) 769, 819, 1280, 1293, 1513, 2002
AflIII ACRYGT 1 cut(s) 2025
AgeI ACCGGT 1 cut(s) 1498
AgsI TTSAA 9 cut(s) 68, 112, 310, 799, 1114, 1336, 1525, 1620, 1903
AhdI GACNNNNNGTC 1 cut(s) 1400
AhlI ACTAGT 1 cut(s) 2042
AjiI CACGTC 1 cut(s) 2026
AjnI CCWGG 3 cut(s) 920, 1007, 1431
AjuI GAANNNNNNNTTGG 4 cut(s) 416, 448, 611, 643
AloI GAACNNNNNNTCC 2 cut(s) 1488, 1520
Alw21I GWGCWC 1 cut(s) 1995
Alw26I GTCTC 8 cut(s) 17, 405, 668, 971, 1313, 1350, 1753, 1792
Ama87I CYCGRG 2 cut(s) 703, 1309
Aor13HI TCCGGA 1 cut(s) 1170
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 6 cut(s) 188, 760, 1005, 1271, 1290, 1814
ApeKI GCWGC 4 cut(s) 725, 728, 1528, 1673
ApoI RAATTY 5 cut(s) 151, 542, 613, 1896, 1903
ArsI GACNNNNNNTTYG 4 cut(s) 653, 685, 1770, 1802
AsiGI ACCGGT 1 cut(s) 1498
AspA2I CCTAGG 2 cut(s) 1484, 1589
AspLEI GCGC 4 cut(s) 250, 775, 897, 1137
AspS9I GGNCC 6 cut(s) 760, 840, 917, 1271, 1535, 1648
AsuC2I CCSGG 3 cut(s) 1193, 1294, 1652
AsuHPI GGTGA 6 cut(s) 242, 1430, 1513, 1782, 2022, 2033
AvaI CYCGRG 2 cut(s) 703, 1309
AvaII GGWCC 4 cut(s) 840, 917, 1535, 1648
AvrII CCTAGG 2 cut(s) 1484, 1589
AxyI CCTNAGG 2 cut(s) 1694, 1818
BaeI ACNNNNGTAYC 2 cut(s) 1862, 1895
BamHI GGATCC 2 cut(s) 1167, 1930
BanI GGYRCC 3 cut(s) 161, 772, 985
BanII GRGCYC 1 cut(s) 1995
BarI GAAGNNNNNNTAC 2 cut(s) 162, 194
BauI CACGAG 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 1995
BbvI GCAGC 4 cut(s) 712, 740, 1515, 1660
BceAI ACGGC 4 cut(s) 553, 747, 1293, 1829
BciT130I CCWGG 3 cut(s) 922, 1009, 1433
BcnI CCSGG 3 cut(s) 1193, 1294, 1652
BcoDI GTCTC 8 cut(s) 17, 405, 668, 971, 1313, 1350, 1753, 1792
BcuI ACTAGT 1 cut(s) 2042
BfaI CTAG 9 cut(s) 57, 245, 251, 578, 1316, 1485, 1590, 2037, 2043
BfmI CTRYAG 2 cut(s) 692, 726
BfoI RGCGCY 2 cut(s) 251, 776
BglI GCCNNNNNGGC 1 cut(s) 1013
BisI GCNGC 5 cut(s) 726, 729, 1053, 1529, 1674
BlnI CCTAGG 2 cut(s) 1484, 1589
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 5 cut(s) 727, 730, 1054, 1530, 1675
BmcAI AGTACT 1 cut(s) 1706
Bme1390I CCNGG 6 cut(s) 922, 1009, 1193, 1294, 1433, 1652
Bme18I GGWCC 4 cut(s) 840, 917, 1535, 1648
BmeRI GACNNNNNGTC 1 cut(s) 1400
BmeT110I CYCGRG 2 cut(s) 703, 1309
BmgBI CACGTC 1 cut(s) 2026
BmgT120I GGNCC 6 cut(s) 760, 840, 917, 1271, 1535, 1648
BmiI GGNNCC 9 cut(s) 163, 774, 919, 987, 1169, 1285, 1497, 1650, 1932
BmrFI CCNGG 6 cut(s) 922, 1009, 1193, 1294, 1433, 1652
BmsI GCATC 8 cut(s) 17, 283, 305, 394, 841, 1146, 1207, 1716
BplI GAGNNNNNCTC 4 cut(s) 1619, 1651, 1733, 1765
BpmI CTGGAG 1 cut(s) 1751
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 2 cut(s) 235, 1900
BpuMI CCSGG 3 cut(s) 1193, 1294, 1652
BsaAI YACGTR 1 cut(s) 1874
BsaHI GRCGYC 2 cut(s) 773, 1162
BsaI GGTCTC 2 cut(s) 971, 1792
BsaJI CCNNGG 8 cut(s) 165, 920, 1008, 1062, 1287, 1308, 1484, 1589
BsaWI WCCGGW 4 cut(s) 791, 900, 1170, 1498
Bsc4I CCNNNNNNNGG 6 cut(s) 769, 819, 1280, 1293, 1513, 2002
Bse118I RCCGGY 2 cut(s) 376, 1498
Bse1I ACTGG 6 cut(s) 34, 191, 752, 974, 1228, 1327
Bse21I CCTNAGG 2 cut(s) 1694, 1818
Bse3DI GCAATG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 1170
BseBI CCWGG 3 cut(s) 922, 1009, 1433
BseDI CCNNGG 8 cut(s) 165, 920, 1008, 1062, 1287, 1308, 1484, 1589
BseGI GGATG 7 cut(s) 89, 414, 663, 745, 856, 1089, 2019
BseLI CCNNNNNNNGG 6 cut(s) 769, 819, 1280, 1293, 1513, 2002
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 5 cut(s) 372, 669, 982, 1031, 1340
BseNI ACTGG 6 cut(s) 34, 191, 752, 974, 1228, 1327
BseRI GAGGAG 4 cut(s) 695, 995, 1961, 1991
BseXI GCAGC 4 cut(s) 712, 740, 1515, 1660
BseYI CCCAGC 1 cut(s) 1268
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 1577
BshFI GGCC 6 cut(s) 190, 762, 1007, 1273, 1292, 1816
BshNI GGYRCC 3 cut(s) 161, 772, 985
BshTI ACCGGT 1 cut(s) 1498
BsiHKAI GWGCWC 1 cut(s) 1995
BsiHKCI CYCGRG 2 cut(s) 703, 1309
BsiSI CCGG 8 cut(s) 377, 792, 901, 1171, 1192, 1293, 1499, 1652
BslFI GGGAC 4 cut(s) 903, 1208, 1634, 1969
BslI CCNNNNNNNGG 6 cut(s) 769, 819, 1280, 1293, 1513, 2002
BsmAI GTCTC 8 cut(s) 17, 405, 668, 971, 1313, 1350, 1753, 1792
BsmFI GGGAC 4 cut(s) 903, 1208, 1634, 1969
BsmI GAATGC 3 cut(s) 101, 268, 1849
BsnI GGCC 6 cut(s) 190, 762, 1007, 1273, 1292, 1816
Bso31I GGTCTC 2 cut(s) 971, 1792
BsoBI CYCGRG 2 cut(s) 703, 1309
Bsp1286I GDGCHC 1 cut(s) 1995
Bsp13I TCCGGA 1 cut(s) 1170
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp19I CCATGG 2 cut(s) 1062, 1287
BspACI CCGC 6 cut(s) 321, 326, 915, 1052, 1553, 1575
BspANI GGCC 6 cut(s) 190, 762, 1007, 1273, 1292, 1816
BspCNI CTCAG 5 cut(s) 373, 670, 981, 1032, 1341
BspEI TCCGGA 1 cut(s) 1170
BspFNI CGCG 1 cut(s) 1577
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 9 cut(s) 163, 774, 919, 987, 1169, 1285, 1497, 1650, 1932
BspMAI CTGCAG 1 cut(s) 730
BspQI GCTCTTC 1 cut(s) 558
BspT107I GGYRCC 3 cut(s) 161, 772, 985
BspTNI GGTCTC 2 cut(s) 971, 1792
BsrBI CCGCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 2 cut(s) 376, 1498
BsrI ACTGG 6 cut(s) 34, 191, 752, 974, 1228, 1327
BssAI RCCGGY 2 cut(s) 376, 1498
BssECI CCNNGG 8 cut(s) 165, 920, 1008, 1062, 1287, 1308, 1484, 1589
BssNI GRCGYC 2 cut(s) 773, 1162
BssSI CACGAG 1 cut(s) 710
BssT1I CCWWGG 5 cut(s) 165, 1062, 1287, 1484, 1589
Bst2BI CACGAG 1 cut(s) 710
Bst2UI CCWGG 3 cut(s) 922, 1009, 1433
Bst4CI ACNGT 4 cut(s) 183, 1199, 1572, 1942
Bst6I CTCTTC 3 cut(s) 558, 1109, 1968
BstACI GRCGYC 2 cut(s) 773, 1162
BstBAI YACGTR 1 cut(s) 1874
BstC8I GCNNGC 3 cut(s) 6, 119, 188
BstDEI CTNAG 9 cut(s) 381, 396, 522, 678, 968, 1040, 1349, 1694, 1818
BstDSI CCRYGG 2 cut(s) 1062, 1287
BstF5I GGATG 7 cut(s) 89, 414, 663, 745, 856, 1089, 2019
BstFNI CGCG 1 cut(s) 1577
BstH2I RGCGCY 2 cut(s) 251, 776
BstHHI GCGC 4 cut(s) 250, 775, 897, 1137
BstMAI GTCTC 8 cut(s) 17, 405, 668, 971, 1313, 1350, 1753, 1792
BstMWI GCNNNNNNNGC 7 cut(s) 10, 52, 574, 759, 779, 1013, 1468
BstNI CCWGG 3 cut(s) 922, 1009, 1433
BstSCI CCNGG 6 cut(s) 920, 1007, 1191, 1292, 1431, 1650
BstSFI CTRYAG 2 cut(s) 692, 726
BstSNI TACGTA 1 cut(s) 1874
BstUI CGCG 1 cut(s) 1577
BstV1I GCAGC 4 cut(s) 712, 740, 1515, 1660
BstX2I RGATCY 4 cut(s) 218, 903, 1167, 1930
BstXI CCANNNNNNTGG 1 cut(s) 1645
BstYI RGATCY 4 cut(s) 218, 903, 1167, 1930
Bsu36I CCTNAGG 2 cut(s) 1694, 1818
BsuRI GGCC 6 cut(s) 190, 762, 1007, 1273, 1292, 1816
BtgI CCRYGG 2 cut(s) 1062, 1287
BtrI CACGTC 1 cut(s) 2026
BtsCI GGATG 7 cut(s) 89, 414, 663, 745, 856, 1089, 2019
BtsIMutI CAGTG 6 cut(s) 198, 603, 981, 1055, 1221, 1938
Cac8I GCNNGC 3 cut(s) 6, 119, 188
CciI TCATGA 1 cut(s) 1213
CfoI GCGC 4 cut(s) 250, 775, 897, 1137
Cfr10I RCCGGY 2 cut(s) 376, 1498
Cfr13I GGNCC 6 cut(s) 760, 840, 917, 1271, 1535, 1648
CseI GACGC 1 cut(s) 1151
CsiI ACCWGGT 1 cut(s) 1431
Csp6I GTAC 2 cut(s) 804, 1705
CspAI ACCGGT 1 cut(s) 1498
CviAII CATG 8 cut(s) 332, 754, 1063, 1214, 1288, 1459, 1468, 1639
CviQI GTAC 2 cut(s) 804, 1705
DdeI CTNAG 9 cut(s) 381, 396, 522, 678, 968, 1040, 1349, 1694, 1818
DinI GGCGCC 1 cut(s) 774
DriI GACNNNNNGTC 1 cut(s) 1400
EaeI YGGCCR 1 cut(s) 1290
Eam1104I CTCTTC 3 cut(s) 558, 1109, 1968
Eam1105I GACNNNNNGTC 1 cut(s) 1400
EarI CTCTTC 3 cut(s) 558, 1109, 1968
Ecl136II GAGCTC 1 cut(s) 1993
Eco105I TACGTA 1 cut(s) 1874
Eco130I CCWWGG 5 cut(s) 165, 1062, 1287, 1484, 1589
Eco147I AGGCCT 1 cut(s) 1007
Eco24I GRGCYC 1 cut(s) 1995
Eco31I GGTCTC 2 cut(s) 971, 1792
Eco47I GGWCC 4 cut(s) 840, 917, 1535, 1648
Eco47III AGCGCT 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 1993
Eco81I CCTNAGG 2 cut(s) 1694, 1818
Eco88I CYCGRG 2 cut(s) 703, 1309
EcoICRI GAGCTC 1 cut(s) 1993
EcoRII CCWGG 3 cut(s) 920, 1007, 1431
EcoT14I CCWWGG 5 cut(s) 165, 1062, 1287, 1484, 1589
EcoT22I ATGCAT 2 cut(s) 298, 1644
EcoT38I GRGCYC 1 cut(s) 1995
EgeI GGCGCC 1 cut(s) 774
EheI GGCGCC 1 cut(s) 774
ErhI CCWWGG 5 cut(s) 165, 1062, 1287, 1484, 1589
FaeI CATG 8 cut(s) 335, 757, 1066, 1217, 1291, 1462, 1471, 1642
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 1691, 1723
FaqI GGGAC 4 cut(s) 903, 1208, 1634, 1969
FatI CATG 8 cut(s) 331, 753, 1062, 1213, 1287, 1458, 1467, 1638
Fnu4HI GCNGC 5 cut(s) 726, 729, 1053, 1529, 1674
FokI GGATG 7 cut(s) 96, 421, 650, 752, 863, 1096, 2026
FriOI GRGCYC 1 cut(s) 1995
Fsp4HI GCNGC 5 cut(s) 726, 729, 1053, 1529, 1674
FspBI CTAG 9 cut(s) 57, 245, 251, 578, 1316, 1485, 1590, 2037, 2043
FspI TGCGCA 1 cut(s) 896
GlaI GCGC 4 cut(s) 249, 774, 896, 1136
GluI GCNGC 5 cut(s) 726, 729, 1053, 1529, 1674
GsaI CCCAGC 1 cut(s) 1272
GsuI CTGGAG 1 cut(s) 1751
HaeII RGCGCY 2 cut(s) 251, 776
HaeIII GGCC 6 cut(s) 190, 762, 1007, 1273, 1292, 1816
HapII CCGG 8 cut(s) 377, 792, 901, 1171, 1192, 1293, 1499, 1652
HgaI GACGC 1 cut(s) 1151
HhaI GCGC 4 cut(s) 250, 775, 897, 1137
Hin1I GRCGYC 2 cut(s) 773, 1162
Hin1II CATG 8 cut(s) 335, 757, 1066, 1217, 1291, 1462, 1471, 1642
Hin6I GCGC 4 cut(s) 248, 773, 895, 1135
HinP1I GCGC 4 cut(s) 248, 773, 895, 1135
HincII GTYRAC 1 cut(s) 1305
HindII GTYRAC 1 cut(s) 1305
HindIII AAGCTT 2 cut(s) 44, 70
HinfI GANTC 5 cut(s) 108, 233, 701, 1721, 1910
HpaII CCGG 8 cut(s) 377, 792, 901, 1171, 1192, 1293, 1499, 1652
HphI GGTGA 6 cut(s) 242, 1430, 1513, 1782, 2022, 2033
Hpy166II GTNNAC 2 cut(s) 1305, 1811
Hpy188I TCNGA 8 cut(s) 107, 830, 933, 999, 1041, 1167, 1247, 1350
Hpy188III TCNNGA 9 cut(s) 737, 820, 834, 848, 1171, 1214, 1333, 1370, 1620
Hpy8I GTNNAC 2 cut(s) 1305, 1811
Hpy99I CGWCG 3 cut(s) 1167, 1279, 1367
HpyCH4III ACNGT 4 cut(s) 183, 1199, 1572, 1942
HpyCH4IV ACGT 3 cut(s) 1362, 1873, 2025
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 52, 574, 759, 779, 1013, 1468
HpyF3I CTNAG 9 cut(s) 381, 396, 522, 678, 968, 1040, 1349, 1694, 1818
HpySE526I ACGT 3 cut(s) 1362, 1873, 2025
Hsp92I GRCGYC 2 cut(s) 773, 1162
Hsp92II CATG 8 cut(s) 335, 757, 1066, 1217, 1291, 1462, 1471, 1642
HspAI GCGC 4 cut(s) 248, 773, 895, 1135
KasI GGCGCC 1 cut(s) 772
Kpn2I TCCGGA 1 cut(s) 1170
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 5 cut(s) 318, 859, 1283, 1990, 1998
Lsp1109I GCAGC 4 cut(s) 712, 740, 1515, 1660
LweI GCATC 8 cut(s) 17, 283, 305, 394, 841, 1146, 1207, 1716
MabI ACCWGGT 1 cut(s) 1431
MaeI CTAG 9 cut(s) 57, 245, 251, 578, 1316, 1485, 1590, 2037, 2043
MaeII ACGT 3 cut(s) 1362, 1873, 2025
MaeIII GTNAC 4 cut(s) 1229, 1607, 2021, 2028
MbiI CCGCTC 1 cut(s) 321
MflI RGATCY 4 cut(s) 218, 903, 1167, 1930
MhlI GDGCHC 1 cut(s) 1995
MluCI AATT 7 cut(s) 151, 542, 613, 875, 1896, 1903, 2049
Mly113I GGCGCC 1 cut(s) 773
MlyI GAGTC 2 cut(s) 695, 1730
MmeI TCCRAC 4 cut(s) 1145, 1372, 1786, 1908
Mph1103I ATGCAT 2 cut(s) 298, 1644
MroI TCCGGA 1 cut(s) 1170
MseI TTAA 7 cut(s) 546, 1179, 1241, 1709, 1839, 2048, 2053
MslI CAYNNNNRTG 2 cut(s) 1142, 1770
MspI CCGG 8 cut(s) 377, 792, 901, 1171, 1192, 1293, 1499, 1652
MspR9I CCNGG 6 cut(s) 922, 1009, 1193, 1294, 1433, 1652
Mva1269I GAATGC 3 cut(s) 101, 268, 1849
MvaI CCWGG 3 cut(s) 922, 1009, 1433
MvnI CGCG 1 cut(s) 1577
MwoI GCNNNNNNNGC 7 cut(s) 10, 52, 574, 759, 779, 1013, 1468
NarI GGCGCC 1 cut(s) 773
NciI CCSGG 3 cut(s) 1193, 1294, 1652
NcoI CCATGG 2 cut(s) 1062, 1287
NlaIII CATG 8 cut(s) 335, 757, 1066, 1217, 1291, 1462, 1471, 1642
NlaIV GGNNCC 9 cut(s) 163, 774, 919, 987, 1169, 1285, 1497, 1650, 1932
NmuCI GTSAC 3 cut(s) 1229, 2021, 2028
NsbI TGCGCA 1 cut(s) 896
NsiI ATGCAT 2 cut(s) 298, 1644
PaeR7I CTCGAG 1 cut(s) 703
PagI TCATGA 1 cut(s) 1213
PceI AGGCCT 1 cut(s) 1007
PciSI GCTCTTC 1 cut(s) 558
PctI GAATGC 3 cut(s) 101, 268, 1849
PfeI GAWTC 3 cut(s) 108, 233, 1910
PflMI CCANNNNNTGG 2 cut(s) 819, 1513
PinAI ACCGGT 1 cut(s) 1498
PkrI GCNGC 5 cut(s) 727, 730, 1054, 1530, 1675
PleI GAGTC 2 cut(s) 695, 1729
PluTI GGCGCC 1 cut(s) 776
PpsI GAGTC 2 cut(s) 695, 1729
Ppu21I YACGTR 1 cut(s) 1874
Psp124BI GAGCTC 1 cut(s) 1995
Psp6I CCWGG 3 cut(s) 920, 1007, 1431
PspFI CCCAGC 1 cut(s) 1268
PspGI CCWGG 3 cut(s) 920, 1007, 1431
PspN4I GGNNCC 9 cut(s) 163, 774, 919, 987, 1169, 1285, 1497, 1650, 1932
PspPI GGNCC 6 cut(s) 760, 840, 917, 1271, 1535, 1648
PspXI VCTCGAGB 1 cut(s) 703
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 4 cut(s) 218, 903, 1167, 1930
RsaI GTAC 2 cut(s) 805, 1706
RsaNI GTAC 2 cut(s) 804, 1705
RseI CAYNNNNRTG 2 cut(s) 1142, 1770
SacI GAGCTC 1 cut(s) 1995
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 7 cut(s) 546, 1179, 1241, 1709, 1839, 2048, 2053
SatI GCNGC 5 cut(s) 726, 729, 1053, 1529, 1674
Sau96I GGNCC 6 cut(s) 760, 840, 917, 1271, 1535, 1648
ScaI AGTACT 1 cut(s) 1706
SchI GAGTC 2 cut(s) 695, 1730
ScrFI CCNGG 6 cut(s) 922, 1009, 1193, 1294, 1433, 1652
SduI GDGCHC 1 cut(s) 1995
SexAI ACCWGGT 1 cut(s) 1431
SfaNI GCATC 8 cut(s) 17, 283, 305, 394, 841, 1146, 1207, 1716
SfcI CTRYAG 2 cut(s) 692, 726
SfoI GGCGCC 1 cut(s) 774
Sfr274I CTCGAG 1 cut(s) 703
SinI GGWCC 4 cut(s) 840, 917, 1535, 1648
SlaI CTCGAG 1 cut(s) 703
SmiMI CAYNNNNRTG 2 cut(s) 1142, 1770
SmlI CTYRAG 3 cut(s) 214, 703, 1915
SmoI CTYRAG 3 cut(s) 214, 703, 1915
SnaBI TACGTA 1 cut(s) 1874
SpeI ACTAGT 1 cut(s) 2042
Sse9I AATT 7 cut(s) 151, 542, 613, 875, 1896, 1903, 2049
SseBI AGGCCT 1 cut(s) 1007
SsiI CCGC 6 cut(s) 321, 326, 915, 1052, 1553, 1575
SspDI GGCGCC 1 cut(s) 772
SspMI CTAG 9 cut(s) 57, 245, 251, 578, 1316, 1485, 1590, 2037, 2043
SstI GAGCTC 1 cut(s) 1995
StuI AGGCCT 1 cut(s) 1007
StyD4I CCNGG 6 cut(s) 920, 1007, 1191, 1292, 1431, 1650
StyI CCWWGG 5 cut(s) 165, 1062, 1287, 1484, 1589
TaaI ACNGT 4 cut(s) 183, 1199, 1572, 1942
TaiI ACGT 3 cut(s) 1365, 1876, 2028
TaqI TCGA 8 cut(s) 148, 653, 704, 1093, 1365, 1442, 1452, 1724
TasI AATT 7 cut(s) 151, 542, 613, 875, 1896, 1903, 2049
TatI WGTACW 1 cut(s) 1704
TauI GCSGC 1 cut(s) 1055
TfiI GAWTC 3 cut(s) 108, 233, 1910
Tru1I TTAA 7 cut(s) 546, 1179, 1241, 1709, 1839, 2048, 2053
Tru9I TTAA 7 cut(s) 546, 1179, 1241, 1709, 1839, 2048, 2053
TscAI CASTG 6 cut(s) 198, 610, 981, 1062, 1228, 1945
TseFI GTSAC 3 cut(s) 1229, 2021, 2028
TseI GCWGC 4 cut(s) 725, 728, 1528, 1673
Tsp45I GTSAC 3 cut(s) 1229, 2021, 2028
TspDTI ATGAA 9 cut(s) 275, 362, 467, 576, 900, 1143, 1202, 1447, 1866
TspGWI ACGGA 2 cut(s) 578, 853
TspRI CASTG 6 cut(s) 198, 610, 981, 1062, 1228, 1945
Van91I CCANNNNNTGG 2 cut(s) 819, 1513
VpaK11BI GGWCC 4 cut(s) 840, 917, 1535, 1648
XapI RAATTY 5 cut(s) 151, 542, 613, 1896, 1903
XcmI CCANNNNNNNNNTGG 1 cut(s) 1769
XhoI CTCGAG 1 cut(s) 703
XmaJI CCTAGG 2 cut(s) 1484, 1589
XspI CTAG 9 cut(s) 57, 245, 251, 578, 1316, 1485, 1590, 2037, 2043
ZrmI AGTACT 1 cut(s) 1706
Zsp2I ATGCAT 2 cut(s) 298, 1644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.