Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 833 |
| AatII | GACGTC | 1 cut(s) | 713 |
| AccI | GTMKAC | 1 cut(s) | 760 |
| AccII | CGCG | 1 cut(s) | 660 |
| AciI | CCGC | 6 cut(s) | 506, 524, 605, 660, 931, 967 |
| AclWI | GGATC | 6 cut(s) | 80, 114, 145, 158, 317, 534 |
| AcsI | RAATTY | 1 cut(s) | 32 |
| AcuI | CTGAAG | 1 cut(s) | 806 |
| AcyI | GRCGYC | 1 cut(s) | 710 |
| AdeI | CACNNNGTG | 1 cut(s) | 451 |
| AfaI | GTAC | 1 cut(s) | 802 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 295, 988, 989 |
| AgsI | TTSAA | 4 cut(s) | 46, 242, 404, 943 |
| AjnI | CCWGG | 2 cut(s) | 37, 254 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 956, 988 |
| AluBI | AGCT | 6 cut(s) | 469, 549, 720, 744, 1108, 1112 |
| AluI | AGCT | 6 cut(s) | 469, 549, 720, 744, 1108, 1112 |
| Alw21I | GWGCWC | 2 cut(s) | 447, 722 |
| Alw26I | GTCTC | 2 cut(s) | 245, 1175 |
| AlwI | GGATC | 6 cut(s) | 80, 114, 145, 158, 317, 534 |
| Ama87I | CYCGRG | 1 cut(s) | 555 |
| AoxI | GGCC | 1 cut(s) | 991 |
| ApoI | RAATTY | 1 cut(s) | 32 |
| AseI | ATTAAT | 1 cut(s) | 897 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 968 |
| AspS9I | GGNCC | 3 cut(s) | 20, 164, 991 |
| AsuC2I | CCSGG | 3 cut(s) | 556, 557, 765 |
| AsuHPI | GGTGA | 4 cut(s) | 487, 534, 808, 861 |
| AsuNHI | GCTAGC | 1 cut(s) | 1108 |
| AvaI | CYCGRG | 1 cut(s) | 555 |
| AvaII | GGWCC | 2 cut(s) | 20, 164 |
| BaeGI | GKGCMC | 1 cut(s) | 53 |
| BamHI | GGATCC | 1 cut(s) | 150 |
| BanII | GRGCYC | 2 cut(s) | 438, 722 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 793, 825 |
| BbsI | GAAGAC | 2 cut(s) | 1084, 1166 |
| Bbv12I | GWGCWC | 2 cut(s) | 447, 722 |
| BccI | CCATC | 2 cut(s) | 203, 835 |
| BceAI | ACGGC | 2 cut(s) | 273, 294 |
| BciT130I | CCWGG | 2 cut(s) | 39, 256 |
| BclI | TGATCA | 2 cut(s) | 127, 271 |
| BcnI | CCSGG | 3 cut(s) | 556, 557, 765 |
| BcoDI | GTCTC | 2 cut(s) | 245, 1175 |
| BfaI | CTAG | 4 cut(s) | 485, 546, 770, 1109 |
| BfmI | CTRYAG | 1 cut(s) | 175 |
| BmcAI | AGTACT | 1 cut(s) | 802 |
| Bme1390I | CCNGG | 5 cut(s) | 39, 256, 556, 557, 765 |
| Bme18I | GGWCC | 2 cut(s) | 20, 164 |
| BmeT110I | CYCGRG | 1 cut(s) | 555 |
| BmgT120I | GGNCC | 3 cut(s) | 20, 164, 991 |
| BmiI | GGNNCC | 2 cut(s) | 152, 381 |
| BmrFI | CCNGG | 5 cut(s) | 39, 256, 556, 557, 765 |
| BmrI | ACTGGG | 3 cut(s) | 630, 802, 998 |
| BmsI | GCATC | 1 cut(s) | 701 |
| BmtI | GCTAGC | 1 cut(s) | 1112 |
| BmuI | ACTGGG | 3 cut(s) | 630, 802, 998 |
| BoxI | GACNNNNGTC | 1 cut(s) | 257 |
| BpiI | GAAGAC | 2 cut(s) | 1084, 1166 |
| BpmI | CTGGAG | 1 cut(s) | 88 |
| BpuEI | CTTGAG | 1 cut(s) | 338 |
| BpuMI | CCSGG | 3 cut(s) | 556, 557, 765 |
| BsaBI | GATNNNNATC | 1 cut(s) | 638 |
| BsaHI | GRCGYC | 1 cut(s) | 710 |
| BsaI | GGTCTC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 7 cut(s) | 38, 167, 255, 555, 556, 579, 764 |
| BsaWI | WCCGGW | 1 cut(s) | 147 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 352, 382 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 295, 988, 989 |
| Bse1I | ACTGG | 4 cut(s) | 477, 625, 797, 993 |
| Bse3DI | GCAATG | 1 cut(s) | 634 |
| Bse8I | GATNNNNATC | 1 cut(s) | 638 |
| BseBI | CCWGG | 2 cut(s) | 39, 256 |
| BseDI | CCNNGG | 7 cut(s) | 38, 167, 255, 555, 556, 579, 764 |
| BseGI | GGATG | 2 cut(s) | 889, 895 |
| BseJI | GATNNNNATC | 1 cut(s) | 638 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 295, 988, 989 |
| BseMI | GCAATG | 1 cut(s) | 634 |
| BseMII | CTCAG | 4 cut(s) | 707, 912, 1170, 1194 |
| BseNI | ACTGG | 4 cut(s) | 477, 625, 797, 993 |
| BseSI | GKGCMC | 1 cut(s) | 53 |
| Bsh1236I | CGCG | 1 cut(s) | 660 |
| BshFI | GGCC | 1 cut(s) | 993 |
| BsiHKAI | GWGCWC | 2 cut(s) | 447, 722 |
| BsiHKCI | CYCGRG | 1 cut(s) | 555 |
| BsiSI | CCGG | 3 cut(s) | 148, 556, 764 |
| BslFI | GGGAC | 2 cut(s) | 538, 631 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 295, 988, 989 |
| BsmAI | GTCTC | 2 cut(s) | 245, 1175 |
| BsmFI | GGGAC | 2 cut(s) | 538, 631 |
| BsnI | GGCC | 1 cut(s) | 993 |
| Bso31I | GGTCTC | 1 cut(s) | 245 |
| BsoBI | CYCGRG | 1 cut(s) | 555 |
| Bsp1286I | GDGCHC | 4 cut(s) | 53, 438, 447, 722 |
| Bsp143I | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| BspACI | CCGC | 6 cut(s) | 506, 524, 605, 660, 931, 967 |
| BspANI | GGCC | 1 cut(s) | 993 |
| BspCNI | CTCAG | 4 cut(s) | 708, 913, 1171, 1195 |
| BspFNI | CGCG | 1 cut(s) | 660 |
| BspLI | GGNNCC | 2 cut(s) | 152, 381 |
| BspOI | GCTAGC | 1 cut(s) | 1112 |
| BspPI | GGATC | 6 cut(s) | 80, 114, 145, 158, 317, 534 |
| BspTNI | GGTCTC | 1 cut(s) | 245 |
| BsrDI | GCAATG | 1 cut(s) | 634 |
| BsrI | ACTGG | 4 cut(s) | 477, 625, 797, 993 |
| BssECI | CCNNGG | 7 cut(s) | 38, 167, 255, 555, 556, 579, 764 |
| BssMI | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| BssNAI | GTATAC | 1 cut(s) | 761 |
| BssNI | GRCGYC | 1 cut(s) | 710 |
| BssT1I | CCWWGG | 2 cut(s) | 167, 579 |
| Bst1107I | GTATAC | 1 cut(s) | 761 |
| Bst2UI | CCWGG | 2 cut(s) | 39, 256 |
| Bst4CI | ACNGT | 2 cut(s) | 513, 1126 |
| Bst6I | CTCTTC | 2 cut(s) | 243, 483 |
| BstACI | GRCGYC | 1 cut(s) | 710 |
| BstC8I | GCNNGC | 1 cut(s) | 1110 |
| BstDEI | CTNAG | 8 cut(s) | 284, 666, 716, 745, 921, 1059, 1179, 1203 |
| BstF5I | GGATG | 2 cut(s) | 889, 895 |
| BstFNI | CGCG | 1 cut(s) | 660 |
| BstKTI | GATC | 9 cut(s) | 75, 109, 130, 153, 274, 312, 394, 529, 658 |
| BstMAI | GTCTC | 2 cut(s) | 245, 1175 |
| BstMBI | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 442, 505, 596 |
| BstNI | CCWGG | 2 cut(s) | 39, 256 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 257 |
| BstSCI | CCNGG | 5 cut(s) | 37, 254, 554, 555, 763 |
| BstSFI | CTRYAG | 1 cut(s) | 175 |
| BstSLI | GKGCMC | 1 cut(s) | 53 |
| BstUI | CGCG | 1 cut(s) | 660 |
| BstV2I | GAAGAC | 2 cut(s) | 1084, 1166 |
| BstX2I | RGATCY | 2 cut(s) | 150, 526 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 586, 730 |
| BstYI | RGATCY | 2 cut(s) | 150, 526 |
| BstZ17I | GTATAC | 1 cut(s) | 761 |
| BsuRI | GGCC | 1 cut(s) | 993 |
| BtgZI | GCGATG | 1 cut(s) | 647 |
| BtsCI | GGATG | 2 cut(s) | 889, 895 |
| BtsIMutI | CAGTG | 3 cut(s) | 223, 702, 713 |
| Cac8I | GCNNGC | 1 cut(s) | 1110 |
| Cfr13I | GGNCC | 3 cut(s) | 20, 164, 991 |
| Cfr9I | CCCGGG | 1 cut(s) | 555 |
| Csp6I | GTAC | 1 cut(s) | 801 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 729, 764 |
| CviAII | CATG | 4 cut(s) | 187, 496, 818, 1037 |
| CviQI | GTAC | 1 cut(s) | 801 |
| DdeI | CTNAG | 8 cut(s) | 284, 666, 716, 745, 921, 1059, 1179, 1203 |
| DpnI | GATC | 9 cut(s) | 74, 108, 129, 152, 273, 311, 393, 528, 657 |
| DpnII | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| DraIII | CACNNNGTG | 1 cut(s) | 451 |
| Eam1104I | CTCTTC | 2 cut(s) | 243, 483 |
| EarI | CTCTTC | 2 cut(s) | 243, 483 |
| EciI | GGCGGA | 1 cut(s) | 539 |
| Ecl136II | GAGCTC | 1 cut(s) | 720 |
| Eco130I | CCWWGG | 2 cut(s) | 167, 579 |
| Eco24I | GRGCYC | 2 cut(s) | 438, 722 |
| Eco31I | GGTCTC | 1 cut(s) | 245 |
| Eco47I | GGWCC | 2 cut(s) | 20, 164 |
| Eco53kI | GAGCTC | 1 cut(s) | 720 |
| Eco57I | CTGAAG | 1 cut(s) | 806 |
| Eco88I | CYCGRG | 1 cut(s) | 555 |
| EcoICRI | GAGCTC | 1 cut(s) | 720 |
| EcoRII | CCWGG | 2 cut(s) | 37, 254 |
| EcoT14I | CCWWGG | 2 cut(s) | 167, 579 |
| EcoT38I | GRGCYC | 2 cut(s) | 438, 722 |
| ErhI | CCWWGG | 2 cut(s) | 167, 579 |
| FaeI | CATG | 4 cut(s) | 190, 499, 821, 1040 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 956, 988 |
| FaqI | GGGAC | 2 cut(s) | 538, 631 |
| FatI | CATG | 4 cut(s) | 186, 495, 817, 1036 |
| FbaI | TGATCA | 2 cut(s) | 127, 271 |
| FblI | GTMKAC | 1 cut(s) | 760 |
| FokI | GGATG | 2 cut(s) | 896, 902 |
| FriOI | GRGCYC | 2 cut(s) | 438, 722 |
| FspBI | CTAG | 4 cut(s) | 485, 546, 770, 1109 |
| GsuI | CTGGAG | 1 cut(s) | 88 |
| HaeIII | GGCC | 1 cut(s) | 993 |
| HapII | CCGG | 3 cut(s) | 148, 556, 764 |
| Hin1I | GRCGYC | 1 cut(s) | 710 |
| Hin1II | CATG | 4 cut(s) | 190, 499, 821, 1040 |
| HincII | GTYRAC | 1 cut(s) | 1043 |
| HindII | GTYRAC | 1 cut(s) | 1043 |
| HindIII | AAGCTT | 1 cut(s) | 742 |
| HinfI | GANTC | 3 cut(s) | 574, 947, 1162 |
| HpaII | CCGG | 3 cut(s) | 148, 556, 764 |
| HphI | GGTGA | 4 cut(s) | 487, 534, 808, 861 |
| Hpy166II | GTNNAC | 3 cut(s) | 164, 761, 1043 |
| Hpy188I | TCNGA | 6 cut(s) | 24, 786, 922, 1026, 1149, 1180 |
| Hpy188III | TCNNGA | 4 cut(s) | 67, 76, 131, 824 |
| Hpy8I | GTNNAC | 3 cut(s) | 164, 761, 1043 |
| Hpy99I | CGWCG | 1 cut(s) | 517 |
| HpyAV | CCTTC | 4 cut(s) | 406, 472, 876, 1001 |
| HpyCH4III | ACNGT | 2 cut(s) | 513, 1126 |
| HpyCH4IV | ACGT | 2 cut(s) | 710, 1144 |
| HpyCH4V | TGCA | 3 cut(s) | 157, 423, 953 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 442, 505, 596 |
| HpyF3I | CTNAG | 8 cut(s) | 284, 666, 716, 745, 921, 1059, 1179, 1203 |
| HpySE526I | ACGT | 2 cut(s) | 710, 1144 |
| Hsp92I | GRCGYC | 1 cut(s) | 710 |
| Hsp92II | CATG | 4 cut(s) | 190, 499, 821, 1040 |
| Ksp22I | TGATCA | 2 cut(s) | 127, 271 |
| Kzo9I | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| LmnI | GCTCC | 4 cut(s) | 373, 504, 624, 725 |
| LweI | GCATC | 1 cut(s) | 701 |
| MaeI | CTAG | 4 cut(s) | 485, 546, 770, 1109 |
| MaeII | ACGT | 2 cut(s) | 710, 1144 |
| MaeIII | GTNAC | 3 cut(s) | 451, 711, 859 |
| MalI | GATC | 9 cut(s) | 74, 108, 129, 152, 273, 311, 393, 528, 657 |
| MboI | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| MfeI | CAATTG | 1 cut(s) | 999 |
| MflI | RGATCY | 2 cut(s) | 150, 526 |
| MhlI | GDGCHC | 4 cut(s) | 53, 438, 447, 722 |
| MluCI | AATT | 3 cut(s) | 32, 957, 999 |
| MlyI | GAGTC | 3 cut(s) | 568, 941, 1156 |
| MmeI | TCCRAC | 1 cut(s) | 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 968 |
| MseI | TTAA | 1 cut(s) | 897 |
| MspI | CCGG | 3 cut(s) | 148, 556, 764 |
| MspR9I | CCNGG | 5 cut(s) | 39, 256, 556, 557, 765 |
| MunI | CAATTG | 1 cut(s) | 999 |
| MvaI | CCWGG | 2 cut(s) | 39, 256 |
| MvnI | CGCG | 1 cut(s) | 660 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 442, 505, 596 |
| NciI | CCSGG | 3 cut(s) | 556, 557, 765 |
| NdeII | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| NheI | GCTAGC | 1 cut(s) | 1108 |
| NlaIII | CATG | 4 cut(s) | 190, 499, 821, 1040 |
| NlaIV | GGNNCC | 2 cut(s) | 152, 381 |
| NmuCI | GTSAC | 2 cut(s) | 451, 711 |
| PdmI | GAANNNNTTC | 1 cut(s) | 968 |
| PleI | GAGTC | 3 cut(s) | 568, 941, 1156 |
| PpsI | GAGTC | 3 cut(s) | 568, 941, 1156 |
| PshAI | GACNNNNGTC | 1 cut(s) | 257 |
| PshBI | ATTAAT | 1 cut(s) | 897 |
| PsiI | TTATAA | 1 cut(s) | 833 |
| Psp124BI | GAGCTC | 1 cut(s) | 722 |
| Psp6I | CCWGG | 2 cut(s) | 37, 254 |
| PspGI | CCWGG | 2 cut(s) | 37, 254 |
| PspN4I | GGNNCC | 2 cut(s) | 152, 381 |
| PspPI | GGNCC | 3 cut(s) | 20, 164, 991 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 216, 248 |
| PsuI | RGATCY | 2 cut(s) | 150, 526 |
| RsaI | GTAC | 1 cut(s) | 802 |
| RsaNI | GTAC | 1 cut(s) | 801 |
| SacI | GAGCTC | 1 cut(s) | 722 |
| SaqAI | TTAA | 1 cut(s) | 897 |
| Sau3AI | GATC | 9 cut(s) | 72, 106, 127, 150, 271, 309, 391, 526, 655 |
| Sau96I | GGNCC | 3 cut(s) | 20, 164, 991 |
| ScaI | AGTACT | 1 cut(s) | 802 |
| SchI | GAGTC | 3 cut(s) | 568, 941, 1156 |
| ScrFI | CCNGG | 5 cut(s) | 39, 256, 556, 557, 765 |
| SduI | GDGCHC | 4 cut(s) | 53, 438, 447, 722 |
| SfaNI | GCATC | 1 cut(s) | 701 |
| SfcI | CTRYAG | 1 cut(s) | 175 |
| SinI | GGWCC | 2 cut(s) | 20, 164 |
| SmaI | CCCGGG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 1 cut(s) | 317 |
| SmoI | CTYRAG | 1 cut(s) | 317 |
| Sse9I | AATT | 3 cut(s) | 32, 957, 999 |
| SsiI | CCGC | 6 cut(s) | 506, 524, 605, 660, 931, 967 |
| SspMI | CTAG | 4 cut(s) | 485, 546, 770, 1109 |
| SstI | GAGCTC | 1 cut(s) | 722 |
| StyD4I | CCNGG | 5 cut(s) | 37, 254, 554, 555, 763 |
| StyI | CCWWGG | 2 cut(s) | 167, 579 |
| TaaI | ACNGT | 2 cut(s) | 513, 1126 |
| TaiI | ACGT | 2 cut(s) | 713, 1147 |
| TaqI | TCGA | 1 cut(s) | 572 |
| TasI | AATT | 3 cut(s) | 32, 957, 999 |
| TatI | WGTACW | 1 cut(s) | 800 |
| Tru1I | TTAA | 1 cut(s) | 897 |
| Tru9I | TTAA | 1 cut(s) | 897 |
| TscAI | CASTG | 3 cut(s) | 223, 702, 720 |
| TseFI | GTSAC | 2 cut(s) | 451, 711 |
| Tsp45I | GTSAC | 2 cut(s) | 451, 711 |
| TspDTI | ATGAA | 2 cut(s) | 484, 768 |
| TspMI | CCCGGG | 1 cut(s) | 555 |
| TspRI | CASTG | 3 cut(s) | 223, 702, 720 |
| VpaK11BI | GGWCC | 2 cut(s) | 20, 164 |
| VspI | ATTAAT | 1 cut(s) | 897 |
| XapI | RAATTY | 1 cut(s) | 32 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 193 |
| XmaI | CCCGGG | 1 cut(s) | 555 |
| XmiI | GTMKAC | 1 cut(s) | 760 |
| XmnI | GAANNNNTTC | 1 cut(s) | 968 |
| XspI | CTAG | 4 cut(s) | 485, 546, 770, 1109 |
| ZraI | GACGTC | 1 cut(s) | 711 |
| ZrmI | AGTACT | 1 cut(s) | 802 |