Rmu_sc0004529.1_g000030

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004529.1
OG0000049
Physical Location & Seq
Forward (+)
132815 .. 136252
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004529.1_g000030.1.cds

Sequence Viewer

Length: 1329 bp
atggtggccggaatagccgactccgatcaaggaaatttgcagcttgggtgccaaacttcccggagtttctgcgtcgtgcacagaccgacccacgtcgtgaaactcaacagagtcatagatgggagtgaggaaaagaggttggcccaaatttcatattcaccgattcgctgttggttcaagttattgggcttggatctcgagcccaagaccgagattactgacaacgctaaatcaatagatgagtattatgcatttctgcaagccccaaaactgcatggatgtggcttgggtccacaactaaggcacgttttcttggcggctgagacattaacacttagaaaaggttttcaagctactgctcttcatggtctgtctaaaatcaaggtcgaagatgactctaagattttgatagattgtatcaacaacaagataacagtcccttggaaattttatatgctagtttatgatatcaagtgtttggcttcacaattctctgatatcgagttcaagcacgtttggcgtgaggcaaattttatggctgatatttccagccttgtcaagggctttaccctttctgaaaatgcacacgttgaccttggcttggcaggggaagcggcgctgcaagatccccaccactgcatagtggggtggctgcttaccaaaaggttgaatattactggttttcttggcaccatgcctacgatttggaggatgagagatggcatggcgttccatgcgggttgggttgttggaacttgggctttgtcaagtaccaatctctttccggctggggctgcagatagagtaactcaacacaaaggtcaagttgtcttcttctctgctcatcttaactcgagattacaagcagcaggtctgttgaagaagcttgttactcctgcttctttagctttaggaccaaaacgttctttggtgagcaatttggtttgtggttctcttggggacagtttcattcaggcttgcaagcaaggtgggtttatggttcctggtattgatggtgattcgccggtttttagtggcaaaaatagatatgttgatgtgcctctgttgtgttcaaggaagaaattggtagccctacctgctctggaaatggatgggatggatgagctatctctctgtcttcctttgaaggatgataggttgataatttcacctcagaagaaaaggaaaattggacacccaaaagggtccaaaaacaaggcaaaggtagtcgacatccttaatgacctgaagacttcatgtgtgaagtttaaagggaagaaatgtttccttaaaatgcttggagctgaggatgtggggattgagctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

442

Amino Acids

48.63

Weight (kDa)

9.15

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 860, 1105
AccB1I GGYRCC 2 cut(s) 48, 689
AccI GTMKAC 1 cut(s) 1230
AciI CCGC 3 cut(s) 317, 614, 737
AclI AACGTT 1 cut(s) 922
AclWI GGATC 2 cut(s) 201, 620
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 4 cut(s) 34, 147, 446, 529
AcuI CTGAAG 1 cut(s) 1268
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 772
AfiI CCNNNNNNNGG 2 cut(s) 559, 601
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 7 cut(s) 178, 350, 508, 670, 880, 1074, 1147
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 1003
AluBI AGCT 7 cut(s) 43, 353, 886, 908, 1126, 1304, 1324
AluI AGCT 7 cut(s) 43, 353, 886, 908, 1126, 1304, 1324
Alw21I GWGCWC 2 cut(s) 81, 1326
Alw26I GTCTC 1 cut(s) 317
Alw44I GTGCAC 1 cut(s) 77
AlwI GGATC 2 cut(s) 201, 620
Ama87I CYCGRG 2 cut(s) 197, 853
AoxI GGCC 2 cut(s) 6, 141
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 5 cut(s) 40, 619, 652, 794, 866
ApoI RAATTY 4 cut(s) 34, 147, 446, 529
Asp700I GAANNNNTTC 1 cut(s) 1283
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 4 cut(s) 142, 290, 914, 1206
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 4 cut(s) 150, 943, 1028, 1161
AvaI CYCGRG 2 cut(s) 197, 853
AvaII GGWCC 3 cut(s) 290, 914, 1206
BaeGI GKGCMC 1 cut(s) 81
BanI GGYRCC 2 cut(s) 48, 689
BanII GRGCYC 2 cut(s) 204, 1326
BbsI GAAGAC 3 cut(s) 823, 1130, 1256
Bbv12I GWGCWC 2 cut(s) 81, 1326
BbvCI CCTCAGC 1 cut(s) 1305
BbvI GCAGC 5 cut(s) 52, 606, 639, 781, 878
BccI CCATC 5 cut(s) 113, 713, 1007, 1106, 1111
BciT130I CCWGG 1 cut(s) 1005
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 2 cut(s) 458, 1327
BfmI CTRYAG 1 cut(s) 795
BfoI RGCGCY 1 cut(s) 620
BfuAI ACCTGC 2 cut(s) 860, 1105
BisI GCNGC 7 cut(s) 41, 318, 615, 620, 653, 795, 867
BlsI GCNGC 7 cut(s) 42, 319, 616, 621, 654, 796, 868
Bme1390I CCNGG 2 cut(s) 61, 1005
Bme18I GGWCC 3 cut(s) 290, 914, 1206
BmeT110I CYCGRG 2 cut(s) 197, 853
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 4 cut(s) 142, 290, 914, 1206
BmiI GGNNCC 5 cut(s) 50, 291, 691, 1002, 1207
BmrFI CCNGG 2 cut(s) 61, 1005
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 3 cut(s) 823, 1130, 1256
Bpu10I CCTNAGC 1 cut(s) 1305
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 440, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 601
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 1 cut(s) 682
BseBI CCWGG 1 cut(s) 1005
BseDI CCNNGG 2 cut(s) 440, 595
BseGI GGATG 8 cut(s) 284, 717, 1117, 1122, 1126, 1156, 1233, 1315
BseLI CCNNNNNNNGG 2 cut(s) 559, 601
BseMII CTCAG 3 cut(s) 312, 1187, 1296
BseNI ACTGG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 5 cut(s) 52, 606, 639, 781, 878
BseYI CCCAGC 1 cut(s) 788
BshFI GGCC 2 cut(s) 8, 143
BshNI GGYRCC 2 cut(s) 48, 689
BsiHKAI GWGCWC 2 cut(s) 81, 1326
BsiHKCI CYCGRG 2 cut(s) 197, 853
BsiSI CCGG 4 cut(s) 9, 61, 785, 1025
BslFI GGGAC 2 cut(s) 422, 974
BslI CCNNNNNNNGG 2 cut(s) 559, 601
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 422, 974
BsnI GGCC 2 cut(s) 8, 143
BsoBI CYCGRG 2 cut(s) 197, 853
Bsp1286I GDGCHC 3 cut(s) 81, 204, 1326
Bsp143I GATC 3 cut(s) 25, 193, 625
BspACI CCGC 3 cut(s) 317, 614, 737
BspANI GGCC 2 cut(s) 8, 143
BspCNI CTCAG 3 cut(s) 313, 1186, 1297
BspLI GGNNCC 5 cut(s) 50, 291, 691, 1002, 1207
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 2 cut(s) 860, 1105
BspPI GGATC 2 cut(s) 201, 620
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 48, 689
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 2 cut(s) 440, 595
BssMI GATC 3 cut(s) 25, 193, 625
BssT1I CCWWGG 2 cut(s) 440, 595
Bst2UI CCWGG 1 cut(s) 1005
Bst4CI ACNGT 2 cut(s) 436, 965
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 261, 979, 983
BstDEI CTNAG 6 cut(s) 299, 321, 335, 399, 1173, 1305
BstENI CCTNNNNNAGG 1 cut(s) 557
BstF5I GGATG 8 cut(s) 284, 717, 1117, 1122, 1126, 1156, 1233, 1315
BstH2I RGCGCY 1 cut(s) 620
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 3 cut(s) 28, 196, 628
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 3 cut(s) 25, 193, 625
BstMWI GCNNNNNNNGC 7 cut(s) 14, 517, 611, 734, 794, 905, 1097
BstNI CCWGG 1 cut(s) 1005
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 59, 1003
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 5 cut(s) 52, 606, 639, 781, 878
BstV2I GAAGAC 3 cut(s) 823, 1130, 1256
BstX2I RGATCY 2 cut(s) 193, 625
BstYI RGATCY 2 cut(s) 193, 625
BsuRI GGCC 2 cut(s) 8, 143
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 8 cut(s) 284, 717, 1117, 1122, 1126, 1156, 1233, 1315
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 1 cut(s) 634
BveI ACCTGC 2 cut(s) 860, 1105
Cac8I GCNNGC 3 cut(s) 261, 979, 983
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 4 cut(s) 142, 290, 914, 1206
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 771
CspCI CAANNNNNGTGG 2 cut(s) 970, 1005
CviAII CATG 6 cut(s) 275, 365, 694, 724, 734, 1257
CviQI GTAC 1 cut(s) 771
DdeI CTNAG 6 cut(s) 299, 321, 335, 399, 1173, 1305
DpnI GATC 3 cut(s) 27, 195, 627
DpnII GATC 3 cut(s) 25, 193, 625
DraI TTTAAA 1 cut(s) 1270
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 1324
Eco130I CCWWGG 2 cut(s) 440, 595
Eco24I GRGCYC 2 cut(s) 204, 1326
Eco32I GATATC 2 cut(s) 469, 499
Eco47I GGWCC 3 cut(s) 290, 914, 1206
Eco53kI GAGCTC 1 cut(s) 1324
Eco57I CTGAAG 1 cut(s) 1268
Eco88I CYCGRG 2 cut(s) 197, 853
EcoICRI GAGCTC 1 cut(s) 1324
EcoNI CCTNNNNNAGG 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 1003
EcoRV GATATC 2 cut(s) 469, 499
EcoT14I CCWWGG 2 cut(s) 440, 595
EcoT22I ATGCAT 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 204, 1326
ErhI CCWWGG 2 cut(s) 440, 595
FaeI CATG 6 cut(s) 278, 368, 697, 727, 737, 1260
FaqI GGGAC 2 cut(s) 422, 974
FatI CATG 6 cut(s) 274, 364, 693, 723, 733, 1256
FauI CCCGC 1 cut(s) 730
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 7 cut(s) 41, 318, 615, 620, 653, 795, 867
FokI GGATG 8 cut(s) 291, 724, 1124, 1129, 1133, 1163, 1220, 1322
FriOI GRGCYC 2 cut(s) 204, 1326
Fsp4HI GCNGC 7 cut(s) 41, 318, 615, 620, 653, 795, 867
FspBI CTAG 2 cut(s) 458, 1327
GlaI GCGC 1 cut(s) 618
GluI GCNGC 7 cut(s) 41, 318, 615, 620, 653, 795, 867
GsaI CCCAGC 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 620
HaeIII GGCC 2 cut(s) 8, 143
HapII CCGG 4 cut(s) 9, 61, 785, 1025
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 619
Hin1II CATG 6 cut(s) 278, 368, 697, 727, 737, 1260
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 2 cut(s) 592, 1231
HindII GTYRAC 2 cut(s) 592, 1231
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 5 cut(s) 20, 111, 163, 395, 1019
HpaII CCGG 4 cut(s) 9, 61, 785, 1025
HphI GGTGA 4 cut(s) 150, 943, 1028, 1161
Hpy166II GTNNAC 4 cut(s) 79, 293, 592, 1231
Hpy188I TCNGA 4 cut(s) 25, 496, 577, 1176
Hpy188III TCNNGA 4 cut(s) 97, 197, 855, 1103
Hpy8I GTNNAC 4 cut(s) 79, 293, 592, 1231
Hpy99I CGWCG 2 cut(s) 77, 98
HpyAV CCTTC 1 cut(s) 1141
HpyCH4III ACNGT 2 cut(s) 436, 965
HpyCH4IV ACGT 5 cut(s) 93, 306, 513, 588, 922
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 517, 611, 734, 794, 905, 1097
HpyF3I CTNAG 6 cut(s) 299, 321, 335, 399, 1173, 1305
HpySE526I ACGT 5 cut(s) 93, 306, 513, 588, 922
Hsp92II CATG 6 cut(s) 278, 368, 697, 727, 737, 1260
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 3 cut(s) 25, 193, 625
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 1301
Lsp1109I GCAGC 5 cut(s) 52, 606, 639, 781, 878
MaeI CTAG 2 cut(s) 458, 1327
MaeII ACGT 5 cut(s) 93, 306, 513, 588, 922
MaeIII GTNAC 2 cut(s) 805, 889
MalI GATC 3 cut(s) 27, 195, 627
MboI GATC 3 cut(s) 25, 193, 625
MflI RGATCY 2 cut(s) 193, 625
MhlI GDGCHC 3 cut(s) 81, 204, 1326
MluCI AATT 9 cut(s) 34, 147, 446, 488, 529, 937, 1082, 1164, 1188
MlyI GAGTC 3 cut(s) 14, 120, 389
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 7 cut(s) 121, 129, 517, 702, 1071, 1182, 1300
Mph1103I ATGCAT 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 1283
MseI TTAA 5 cut(s) 329, 849, 1239, 1269, 1290
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 4 cut(s) 9, 61, 785, 1025
MspR9I CCNGG 2 cut(s) 61, 1005
MvaI CCWGG 1 cut(s) 1005
MwoI GCNNNNNNNGC 7 cut(s) 14, 517, 611, 734, 794, 905, 1097
NciI CCSGG 1 cut(s) 61
NdeII GATC 3 cut(s) 25, 193, 625
NlaIII CATG 6 cut(s) 278, 368, 697, 727, 737, 1260
NlaIV GGNNCC 5 cut(s) 50, 291, 691, 1002, 1207
NsiI ATGCAT 1 cut(s) 253
PaeR7I CTCGAG 2 cut(s) 197, 853
PciSI GCTCTTC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 1283
PfeI GAWTC 2 cut(s) 163, 1019
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 7 cut(s) 42, 319, 616, 621, 654, 796, 868
PleI GAGTC 3 cut(s) 14, 119, 389
PpsI GAGTC 3 cut(s) 14, 119, 389
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 1326
Psp1406I AACGTT 1 cut(s) 922
Psp6I CCWGG 1 cut(s) 1003
PspFI CCCAGC 1 cut(s) 788
PspGI CCWGG 1 cut(s) 1003
PspN4I GGNNCC 5 cut(s) 50, 291, 691, 1002, 1207
PspPI GGNCC 4 cut(s) 142, 290, 914, 1206
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 2 cut(s) 193, 625
RsaI GTAC 1 cut(s) 772
RsaNI GTAC 1 cut(s) 771
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 1326
SalI GTCGAC 1 cut(s) 1229
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 5 cut(s) 329, 849, 1239, 1269, 1290
SatI GCNGC 7 cut(s) 41, 318, 615, 620, 653, 795, 867
Sau3AI GATC 3 cut(s) 25, 193, 625
Sau96I GGNCC 4 cut(s) 142, 290, 914, 1206
SchI GAGTC 3 cut(s) 14, 120, 389
ScrFI CCNGG 2 cut(s) 61, 1005
SduI GDGCHC 3 cut(s) 81, 204, 1326
SfcI CTRYAG 1 cut(s) 795
Sfr274I CTCGAG 2 cut(s) 197, 853
SinI GGWCC 3 cut(s) 290, 914, 1206
SlaI CTCGAG 2 cut(s) 197, 853
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 197, 853
SmoI CTYRAG 2 cut(s) 197, 853
Sse9I AATT 9 cut(s) 34, 147, 446, 488, 529, 937, 1082, 1164, 1188
SsiI CCGC 3 cut(s) 317, 614, 737
SspI AATATT 1 cut(s) 673
SspMI CTAG 2 cut(s) 458, 1327
SstI GAGCTC 1 cut(s) 1326
StyD4I CCNGG 2 cut(s) 59, 1003
StyI CCWWGG 2 cut(s) 440, 595
TaaI ACNGT 2 cut(s) 436, 965
TaiI ACGT 5 cut(s) 96, 309, 516, 591, 925
TaqI TCGA 5 cut(s) 198, 387, 501, 854, 1230
TaqII GACCGA 2 cut(s) 100, 224
TasI AATT 9 cut(s) 34, 147, 446, 488, 529, 937, 1082, 1164, 1188
TauI GCSGC 2 cut(s) 320, 617
TfiI GAWTC 2 cut(s) 163, 1019
Tru1I TTAA 5 cut(s) 329, 849, 1239, 1269, 1290
Tru9I TTAA 5 cut(s) 329, 849, 1239, 1269, 1290
TscAI CASTG 1 cut(s) 641
TseI GCWGC 5 cut(s) 40, 619, 652, 794, 866
TspDTI ATGAA 4 cut(s) 141, 353, 958, 1245
TspRI CASTG 1 cut(s) 641
VneI GTGCAC 1 cut(s) 77
VpaK11BI GGWCC 3 cut(s) 290, 914, 1206
XagI CCTNNNNNAGG 1 cut(s) 557
XapI RAATTY 4 cut(s) 34, 147, 446, 529
XhoI CTCGAG 2 cut(s) 197, 853
XmiI GTMKAC 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 1283
XspI CTAG 2 cut(s) 458, 1327
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.