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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 502 |
| Acc36I | ACCTGC | 1 cut(s) | 1234 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccBSI | CCGCTC | 2 cut(s) | 33, 707 |
| AciI | CCGC | 8 cut(s) | 33, 74, 395, 404, 705, 718, 936, 1345 |
| AclWI | GGATC | 7 cut(s) | 2, 15, 43, 392, 405, 918, 965 |
| AcoI | YGGCCR | 1 cut(s) | 702 |
| AcsI | RAATTY | 4 cut(s) | 82, 140, 1026, 1175 |
| AcuI | CTGAAG | 3 cut(s) | 195, 366, 1119 |
| AfaI | GTAC | 4 cut(s) | 25, 335, 840, 1292 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 215, 258, 907, 1351 |
| AflII | CTTAAG | 1 cut(s) | 1075 |
| AgsI | TTSAA | 4 cut(s) | 516, 612, 656, 888 |
| AjnI | CCWGG | 2 cut(s) | 1197, 1251 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 571, 603, 1288, 1320 |
| AluBI | AGCT | 7 cut(s) | 160, 173, 617, 639, 809, 949, 1237 |
| AluI | AGCT | 7 cut(s) | 160, 173, 617, 639, 809, 949, 1237 |
| Alw26I | GTCTC | 3 cut(s) | 380, 821, 916 |
| AlwI | GGATC | 7 cut(s) | 2, 15, 43, 392, 405, 918, 965 |
| Ama87I | CYCGRG | 1 cut(s) | 28 |
| AoxI | GGCC | 1 cut(s) | 702 |
| ApeKI | GCWGC | 4 cut(s) | 170, 989, 1394, 1397 |
| ApoI | RAATTY | 4 cut(s) | 82, 140, 1026, 1175 |
| AspS9I | GGNCC | 4 cut(s) | 273, 384, 463, 1246 |
| AsuC2I | CCSGG | 2 cut(s) | 326, 594 |
| AsuHPI | GGTGA | 3 cut(s) | 980, 1267, 1349 |
| AvaI | CYCGRG | 1 cut(s) | 28 |
| AvaII | GGWCC | 4 cut(s) | 273, 384, 463, 1246 |
| AxyI | CCTNAGG | 1 cut(s) | 1131 |
| BamHI | GGATCC | 2 cut(s) | 7, 397 |
| BauI | CACGAG | 1 cut(s) | 192 |
| BbsI | GAAGAC | 2 cut(s) | 232, 290 |
| BbvI | GCAGC | 4 cut(s) | 182, 1001, 1381, 1384 |
| BccI | CCATC | 1 cut(s) | 788 |
| BciT130I | CCWGG | 2 cut(s) | 1199, 1253 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BcnI | CCSGG | 2 cut(s) | 326, 594 |
| BcoDI | GTCTC | 3 cut(s) | 380, 821, 916 |
| BfaI | CTAG | 3 cut(s) | 585, 723, 1401 |
| BfrI | CTTAAG | 1 cut(s) | 1075 |
| BfuAI | ACCTGC | 1 cut(s) | 1234 |
| BisI | GCNGC | 5 cut(s) | 171, 705, 990, 1395, 1398 |
| BlsI | GCNGC | 5 cut(s) | 172, 706, 991, 1396, 1399 |
| Bme1390I | CCNGG | 4 cut(s) | 326, 594, 1199, 1253 |
| Bme18I | GGWCC | 4 cut(s) | 273, 384, 463, 1246 |
| BmeT110I | CYCGRG | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 4 cut(s) | 273, 384, 463, 1246 |
| BmiI | GGNNCC | 4 cut(s) | 9, 124, 399, 1248 |
| BmrFI | CCNGG | 4 cut(s) | 326, 594, 1199, 1253 |
| BmsI | GCATC | 3 cut(s) | 157, 649, 1350 |
| BpiI | GAAGAC | 2 cut(s) | 232, 290 |
| BpmI | CTGGAG | 1 cut(s) | 1173 |
| BpuEI | CTTGAG | 2 cut(s) | 845, 1352 |
| BpuMI | CCSGG | 2 cut(s) | 326, 594 |
| BsaJI | CCNNGG | 4 cut(s) | 87, 252, 545, 1251 |
| BsaWI | WCCGGW | 1 cut(s) | 386 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 215, 258, 907, 1351 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 3 cut(s) | 309, 507, 785 |
| Bse21I | CCTNAGG | 1 cut(s) | 1131 |
| Bse3DI | GCAATG | 1 cut(s) | 1272 |
| BseBI | CCWGG | 2 cut(s) | 1199, 1253 |
| BseDI | CCNNGG | 4 cut(s) | 87, 252, 545, 1251 |
| BseGI | GGATG | 2 cut(s) | 448, 472 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 215, 258, 907, 1351 |
| BseMI | GCAATG | 1 cut(s) | 1272 |
| BseMII | CTCAG | 4 cut(s) | 468, 722, 1122, 1251 |
| BseNI | ACTGG | 3 cut(s) | 309, 507, 785 |
| BseRI | GAGGAG | 2 cut(s) | 539, 1370 |
| BseXI | GCAGC | 4 cut(s) | 182, 1001, 1381, 1384 |
| BshFI | GGCC | 1 cut(s) | 704 |
| BsiHKCI | CYCGRG | 1 cut(s) | 28 |
| BsiSI | CCGG | 5 cut(s) | 14, 209, 326, 387, 593 |
| BslFI | GGGAC | 2 cut(s) | 555, 1232 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 215, 258, 907, 1351 |
| BsmAI | GTCTC | 3 cut(s) | 380, 821, 916 |
| BsmFI | GGGAC | 2 cut(s) | 555, 1232 |
| BsnI | GGCC | 1 cut(s) | 704 |
| BsoBI | CYCGRG | 1 cut(s) | 28 |
| Bsp143I | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| Bsp19I | CCATGG | 1 cut(s) | 545 |
| BspACI | CCGC | 8 cut(s) | 33, 74, 395, 404, 705, 718, 936, 1345 |
| BspANI | GGCC | 1 cut(s) | 704 |
| BspCNI | CTCAG | 4 cut(s) | 469, 721, 1123, 1252 |
| BspHI | TCATGA | 1 cut(s) | 378 |
| BspLI | GGNNCC | 4 cut(s) | 9, 124, 399, 1248 |
| BspMI | ACCTGC | 1 cut(s) | 1234 |
| BspPI | GGATC | 7 cut(s) | 2, 15, 43, 392, 405, 918, 965 |
| BspTI | CTTAAG | 1 cut(s) | 1075 |
| BsrBI | CCGCTC | 2 cut(s) | 33, 707 |
| BsrDI | GCAATG | 1 cut(s) | 1272 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrI | ACTGG | 3 cut(s) | 309, 507, 785 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 4 cut(s) | 87, 252, 545, 1251 |
| BssMI | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| BssSI | CACGAG | 1 cut(s) | 192 |
| BssT1I | CCWWGG | 2 cut(s) | 252, 545 |
| Bst2BI | CACGAG | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 2 cut(s) | 1199, 1253 |
| Bst4CI | ACNGT | 4 cut(s) | 780, 902, 1140, 1213 |
| BstAFI | CTTAAG | 1 cut(s) | 1075 |
| BstC8I | GCNNGC | 3 cut(s) | 811, 1012, 1149 |
| BstDEI | CTNAG | 6 cut(s) | 477, 635, 708, 1131, 1260, 1364 |
| BstDSI | CCRYGG | 2 cut(s) | 87, 545 |
| BstEII | GGTNACC | 1 cut(s) | 780 |
| BstF5I | GGATG | 2 cut(s) | 448, 472 |
| BstKTI | GATC | 6 cut(s) | 10, 38, 108, 400, 913, 973 |
| BstMAI | GTCTC | 3 cut(s) | 380, 821, 916 |
| BstMBI | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 176, 205, 401 |
| BstNI | CCWGG | 2 cut(s) | 1199, 1253 |
| BstNSI | RCATGY | 2 cut(s) | 340, 1151 |
| BstPI | GGTNACC | 1 cut(s) | 780 |
| BstSCI | CCNGG | 4 cut(s) | 324, 592, 1197, 1251 |
| BstV1I | GCAGC | 4 cut(s) | 182, 1001, 1381, 1384 |
| BstV2I | GAAGAC | 2 cut(s) | 232, 290 |
| BstX2I | RGATCY | 2 cut(s) | 7, 397 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 304 |
| BstYI | RGATCY | 2 cut(s) | 7, 397 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1131 |
| BsuRI | GGCC | 1 cut(s) | 704 |
| BtgI | CCRYGG | 2 cut(s) | 87, 545 |
| BtsCI | GGATG | 2 cut(s) | 448, 472 |
| BtsIMutI | CAGTG | 3 cut(s) | 489, 1145, 1222 |
| BveI | ACCTGC | 1 cut(s) | 1234 |
| Cac8I | GCNNGC | 3 cut(s) | 811, 1012, 1149 |
| CciI | TCATGA | 1 cut(s) | 378 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 4 cut(s) | 273, 384, 463, 1246 |
| Csp6I | GTAC | 4 cut(s) | 24, 334, 839, 1291 |
| CviAII | CATG | 7 cut(s) | 280, 337, 379, 546, 1148, 1240, 1316 |
| CviQI | GTAC | 4 cut(s) | 24, 334, 839, 1291 |
| DdeI | CTNAG | 6 cut(s) | 477, 635, 708, 1131, 1260, 1364 |
| DpnI | GATC | 6 cut(s) | 9, 37, 107, 399, 912, 972 |
| DpnII | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| DraI | TTTAAA | 1 cut(s) | 1111 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 502 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 502 |
| EaeI | YGGCCR | 1 cut(s) | 702 |
| EciI | GGCGGA | 1 cut(s) | 410 |
| Eco130I | CCWWGG | 2 cut(s) | 252, 545 |
| Eco47I | GGWCC | 4 cut(s) | 273, 384, 463, 1246 |
| Eco57I | CTGAAG | 3 cut(s) | 195, 366, 1119 |
| Eco81I | CCTNAGG | 1 cut(s) | 1131 |
| Eco88I | CYCGRG | 1 cut(s) | 28 |
| Eco91I | GGTNACC | 1 cut(s) | 780 |
| EcoO109I | RGGNCCY | 2 cut(s) | 463, 1246 |
| EcoO65I | GGTNACC | 1 cut(s) | 780 |
| EcoRI | GAATTC | 1 cut(s) | 82 |
| EcoRII | CCWGG | 2 cut(s) | 1197, 1251 |
| EcoT14I | CCWWGG | 2 cut(s) | 252, 545 |
| ErhI | CCWWGG | 2 cut(s) | 252, 545 |
| FaeI | CATG | 7 cut(s) | 283, 340, 382, 549, 1151, 1243, 1319 |
| FaqI | GGGAC | 2 cut(s) | 555, 1232 |
| FatI | CATG | 7 cut(s) | 279, 336, 378, 545, 1147, 1239, 1315 |
| FauNDI | CATATG | 1 cut(s) | 94 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 5 cut(s) | 171, 705, 990, 1395, 1398 |
| FokI | GGATG | 2 cut(s) | 455, 459 |
| Fsp4HI | GCNGC | 5 cut(s) | 171, 705, 990, 1395, 1398 |
| FspBI | CTAG | 3 cut(s) | 585, 723, 1401 |
| GluI | GCNGC | 5 cut(s) | 171, 705, 990, 1395, 1398 |
| GsuI | CTGGAG | 1 cut(s) | 1173 |
| HaeIII | GGCC | 1 cut(s) | 704 |
| HapII | CCGG | 5 cut(s) | 14, 209, 326, 387, 593 |
| Hin1II | CATG | 7 cut(s) | 283, 340, 382, 549, 1151, 1243, 1319 |
| HindIII | AAGCTT | 2 cut(s) | 615, 637 |
| HinfI | GANTC | 4 cut(s) | 479, 752, 939, 1189 |
| HpaII | CCGG | 5 cut(s) | 14, 209, 326, 387, 593 |
| HphI | GGTGA | 3 cut(s) | 980, 1267, 1349 |
| Hpy166II | GTNNAC | 2 cut(s) | 185, 1390 |
| Hpy188I | TCNGA | 7 cut(s) | 312, 457, 711, 751, 776, 791, 1050 |
| Hpy188III | TCNNGA | 8 cut(s) | 356, 379, 476, 557, 824, 1130, 1193, 1283 |
| Hpy8I | GTNNAC | 2 cut(s) | 185, 1390 |
| HpyAV | CCTTC | 4 cut(s) | 208, 214, 344, 959 |
| HpyCH4III | ACNGT | 4 cut(s) | 780, 902, 1140, 1213 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 1221 |
| HpyCH4V | TGCA | 3 cut(s) | 170, 279, 1243 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 176, 205, 401 |
| HpyF3I | CTNAG | 6 cut(s) | 477, 635, 708, 1131, 1260, 1364 |
| HpySE526I | ACGT | 2 cut(s) | 69, 1221 |
| Hsp92II | CATG | 7 cut(s) | 283, 340, 382, 549, 1151, 1243, 1319 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| Kzo9I | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| LmnI | GCTCC | 3 cut(s) | 157, 726, 1428 |
| Lsp1109I | GCAGC | 4 cut(s) | 182, 1001, 1381, 1384 |
| LweI | GCATC | 3 cut(s) | 157, 649, 1350 |
| MaeI | CTAG | 3 cut(s) | 585, 723, 1401 |
| MaeII | ACGT | 2 cut(s) | 69, 1221 |
| MaeIII | GTNAC | 6 cut(s) | 484, 780, 893, 1217, 1255, 1376 |
| MalI | GATC | 6 cut(s) | 9, 37, 107, 399, 912, 972 |
| MbiI | CCGCTC | 2 cut(s) | 33, 707 |
| MboI | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| MboII | GAAGA | 6 cut(s) | 91, 237, 295, 359, 668, 874 |
| MfeI | CAATTG | 2 cut(s) | 698, 1432 |
| MflI | RGATCY | 2 cut(s) | 7, 397 |
| MlyI | GAGTC | 3 cut(s) | 488, 933, 1198 |
| MmeI | TCCRAC | 1 cut(s) | 769 |
| MseI | TTAA | 6 cut(s) | 533, 762, 1002, 1076, 1110, 1179 |
| MslI | CAYNNNNRTG | 1 cut(s) | 550 |
| MspA1I | CMGCKG | 1 cut(s) | 173 |
| MspCI | CTTAAG | 1 cut(s) | 1075 |
| MspI | CCGG | 5 cut(s) | 14, 209, 326, 387, 593 |
| MspR9I | CCNGG | 4 cut(s) | 326, 594, 1199, 1253 |
| MunI | CAATTG | 2 cut(s) | 698, 1432 |
| MvaI | CCWGG | 2 cut(s) | 1199, 1253 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 176, 205, 401 |
| NciI | CCSGG | 2 cut(s) | 326, 594 |
| NcoI | CCATGG | 1 cut(s) | 545 |
| NdeI | CATATG | 1 cut(s) | 94 |
| NdeII | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| NlaIII | CATG | 7 cut(s) | 283, 340, 382, 549, 1151, 1243, 1319 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 124, 399, 1248 |
| NmeAIII | GCCGAG | 1 cut(s) | 219 |
| NmuCI | GTSAC | 4 cut(s) | 484, 893, 1217, 1255 |
| NspI | RCATGY | 2 cut(s) | 340, 1151 |
| PaeI | GCATGC | 1 cut(s) | 1151 |
| PaeR7I | CTCGAG | 1 cut(s) | 28 |
| PagI | TCATGA | 1 cut(s) | 378 |
| PfeI | GAWTC | 1 cut(s) | 752 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PkrI | GCNGC | 5 cut(s) | 172, 706, 991, 1396, 1399 |
| PleI | GAGTC | 3 cut(s) | 487, 933, 1197 |
| PpsI | GAGTC | 3 cut(s) | 487, 933, 1197 |
| PpuMI | RGGWCCY | 2 cut(s) | 463, 1246 |
| Psp5II | RGGWCCY | 2 cut(s) | 463, 1246 |
| Psp6I | CCWGG | 2 cut(s) | 1197, 1251 |
| PspEI | GGTNACC | 1 cut(s) | 780 |
| PspGI | CCWGG | 2 cut(s) | 1197, 1251 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 124, 399, 1248 |
| PspPI | GGNCC | 4 cut(s) | 273, 384, 463, 1246 |
| PspPPI | RGGWCCY | 2 cut(s) | 463, 1246 |
| PspXI | VCTCGAGB | 1 cut(s) | 28 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1215, 1247 |
| PsuI | RGATCY | 2 cut(s) | 7, 397 |
| PvuII | CAGCTG | 1 cut(s) | 173 |
| RsaI | GTAC | 4 cut(s) | 25, 335, 840, 1292 |
| RsaNI | GTAC | 4 cut(s) | 24, 334, 839, 1291 |
| RseI | CAYNNNNRTG | 1 cut(s) | 550 |
| SaqAI | TTAA | 6 cut(s) | 533, 762, 1002, 1076, 1110, 1179 |
| SatI | GCNGC | 5 cut(s) | 171, 705, 990, 1395, 1398 |
| Sau3AI | GATC | 6 cut(s) | 7, 35, 105, 397, 910, 970 |
| Sau96I | GGNCC | 4 cut(s) | 273, 384, 463, 1246 |
| SchI | GAGTC | 3 cut(s) | 488, 933, 1198 |
| ScrFI | CCNGG | 4 cut(s) | 326, 594, 1199, 1253 |
| SfaNI | GCATC | 3 cut(s) | 157, 649, 1350 |
| Sfr274I | CTCGAG | 1 cut(s) | 28 |
| SgrAI | CRCCGGYG | 1 cut(s) | 13 |
| SinI | GGWCC | 4 cut(s) | 273, 384, 463, 1246 |
| SlaI | CTCGAG | 1 cut(s) | 28 |
| SmiI | ATTTAAAT | 1 cut(s) | 1111 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 550 |
| SmlI | CTYRAG | 4 cut(s) | 28, 824, 1075, 1331 |
| SmoI | CTYRAG | 4 cut(s) | 28, 824, 1075, 1331 |
| SphI | GCATGC | 1 cut(s) | 1151 |
| SsiI | CCGC | 8 cut(s) | 33, 74, 395, 404, 705, 718, 936, 1345 |
| SspI | AATATT | 3 cut(s) | 1107, 1115, 1411 |
| SspMI | CTAG | 3 cut(s) | 585, 723, 1401 |
| StyD4I | CCNGG | 4 cut(s) | 324, 592, 1197, 1251 |
| StyI | CCWWGG | 2 cut(s) | 252, 545 |
| SwaI | ATTTAAAT | 1 cut(s) | 1111 |
| TaaI | ACNGT | 4 cut(s) | 780, 902, 1140, 1213 |
| TaiI | ACGT | 2 cut(s) | 72, 1224 |
| TaqI | TCGA | 1 cut(s) | 29 |
| TaqII | GACCGA | 1 cut(s) | 705 |
| TatI | WGTACW | 2 cut(s) | 333, 838 |
| TauI | GCSGC | 1 cut(s) | 707 |
| TfiI | GAWTC | 1 cut(s) | 752 |
| Tru1I | TTAA | 6 cut(s) | 533, 762, 1002, 1076, 1110, 1179 |
| Tru9I | TTAA | 6 cut(s) | 533, 762, 1002, 1076, 1110, 1179 |
| TscAI | CASTG | 3 cut(s) | 489, 1145, 1222 |
| TseFI | GTSAC | 4 cut(s) | 484, 893, 1217, 1255 |
| TseI | GCWGC | 4 cut(s) | 170, 989, 1394, 1397 |
| Tsp45I | GTSAC | 4 cut(s) | 484, 893, 1217, 1255 |
| TspDTI | ATGAA | 5 cut(s) | 153, 296, 681, 1188, 1332 |
| TspGWI | ACGGA | 1 cut(s) | 76 |
| TspRI | CASTG | 3 cut(s) | 489, 1145, 1222 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| Vha464I | CTTAAG | 1 cut(s) | 1075 |
| VpaK11BI | GGWCC | 4 cut(s) | 273, 384, 463, 1246 |
| XapI | RAATTY | 4 cut(s) | 82, 140, 1026, 1175 |
| XceI | RCATGY | 2 cut(s) | 340, 1151 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1279 |
| XhoI | CTCGAG | 1 cut(s) | 28 |
| XspI | CTAG | 3 cut(s) | 585, 723, 1401 |