Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 311 |
| AccI | GTMKAC | 1 cut(s) | 389 |
| AccII | CGCG | 1 cut(s) | 33 |
| AciI | CCGC | 2 cut(s) | 125, 503 |
| AclWI | GGATC | 2 cut(s) | 352, 593 |
| AcsI | RAATTY | 1 cut(s) | 730 |
| AfaI | GTAC | 2 cut(s) | 490, 567 |
| AfeI | AGCGCT | 1 cut(s) | 740 |
| AgsI | TTSAA | 6 cut(s) | 23, 29, 142, 415, 647, 659 |
| AhlI | ACTAGT | 1 cut(s) | 848 |
| AjnI | CCWGG | 1 cut(s) | 609 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 689, 716, 721, 748 |
| AluBI | AGCT | 3 cut(s) | 220, 274, 294 |
| AluI | AGCT | 3 cut(s) | 220, 274, 294 |
| Alw26I | GTCTC | 3 cut(s) | 146, 642, 718 |
| AlwI | GGATC | 2 cut(s) | 352, 593 |
| Aor51HI | AGCGCT | 1 cut(s) | 740 |
| AoxI | GGCC | 1 cut(s) | 512 |
| ApeKI | GCWGC | 3 cut(s) | 291, 422, 818 |
| ApoI | RAATTY | 1 cut(s) | 730 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 696, 728 |
| AspLEI | GCGC | 2 cut(s) | 618, 741 |
| AspS9I | GGNCC | 1 cut(s) | 607 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 708, 782 |
| AvaII | GGWCC | 1 cut(s) | 607 |
| BbsI | GAAGAC | 1 cut(s) | 549 |
| BbvI | GCAGC | 3 cut(s) | 303, 409, 805 |
| BccI | CCATC | 3 cut(s) | 104, 662, 803 |
| BceAI | ACGGC | 1 cut(s) | 750 |
| BciT130I | CCWGG | 1 cut(s) | 611 |
| BcoDI | GTCTC | 3 cut(s) | 146, 642, 718 |
| BcuI | ACTAGT | 1 cut(s) | 848 |
| BfaI | CTAG | 2 cut(s) | 182, 849 |
| BfmI | CTRYAG | 1 cut(s) | 819 |
| BfoI | RGCGCY | 1 cut(s) | 742 |
| BfuAI | ACCTGC | 1 cut(s) | 311 |
| BglII | AGATCT | 1 cut(s) | 435 |
| BisI | GCNGC | 3 cut(s) | 292, 423, 819 |
| BlpI | GCTNAGC | 1 cut(s) | 39 |
| BlsI | GCNGC | 3 cut(s) | 293, 424, 820 |
| BmcAI | AGTACT | 1 cut(s) | 490 |
| Bme1390I | CCNGG | 1 cut(s) | 611 |
| Bme18I | GGWCC | 1 cut(s) | 607 |
| BmgT120I | GGNCC | 1 cut(s) | 607 |
| BmiI | GGNNCC | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 611 |
| BmsI | GCATC | 6 cut(s) | 91, 213, 319, 452, 817, 845 |
| BpiI | GAAGAC | 1 cut(s) | 549 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 39 |
| BpuEI | CTTGAG | 1 cut(s) | 260 |
| BsaI | GGTCTC | 1 cut(s) | 718 |
| BsaJI | CCNNGG | 4 cut(s) | 573, 610, 719, 766 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 785, 815 |
| Bse118I | RCCGGY | 1 cut(s) | 235 |
| Bse1I | ACTGG | 1 cut(s) | 472 |
| BseBI | CCWGG | 1 cut(s) | 611 |
| BseDI | CCNNGG | 4 cut(s) | 573, 610, 719, 766 |
| BseGI | GGATG | 4 cut(s) | 204, 358, 832, 836 |
| BseMII | CTCAG | 3 cut(s) | 30, 461, 744 |
| BseNI | ACTGG | 1 cut(s) | 472 |
| BseRI | GAGGAG | 2 cut(s) | 770, 773 |
| BseXI | GCAGC | 3 cut(s) | 303, 409, 805 |
| BseYI | CCCAGC | 2 cut(s) | 482, 580 |
| Bsh1236I | CGCG | 1 cut(s) | 33 |
| BshFI | GGCC | 1 cut(s) | 514 |
| BsiSI | CCGG | 1 cut(s) | 236 |
| BsmAI | GTCTC | 3 cut(s) | 146, 642, 718 |
| BsmI | GAATGC | 2 cut(s) | 484, 678 |
| BsnI | GGCC | 1 cut(s) | 514 |
| Bso31I | GGTCTC | 1 cut(s) | 718 |
| Bsp1407I | TGTACA | 1 cut(s) | 565 |
| Bsp143I | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 39 |
| BspACI | CCGC | 2 cut(s) | 125, 503 |
| BspANI | GGCC | 1 cut(s) | 514 |
| BspCNI | CTCAG | 3 cut(s) | 31, 460, 745 |
| BspFNI | CGCG | 1 cut(s) | 33 |
| BspLI | GGNNCC | 1 cut(s) | 135 |
| BspMAI | CTGCAG | 1 cut(s) | 823 |
| BspMI | ACCTGC | 1 cut(s) | 311 |
| BspPI | GGATC | 2 cut(s) | 352, 593 |
| BspTNI | GGTCTC | 1 cut(s) | 718 |
| BsrFI | RCCGGY | 1 cut(s) | 235 |
| BsrGI | TGTACA | 1 cut(s) | 565 |
| BsrI | ACTGG | 1 cut(s) | 472 |
| BssAI | RCCGGY | 1 cut(s) | 235 |
| BssECI | CCNNGG | 4 cut(s) | 573, 610, 719, 766 |
| BssMI | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| BssT1I | CCWWGG | 1 cut(s) | 719 |
| Bst2UI | CCWGG | 1 cut(s) | 611 |
| Bst4CI | ACNGT | 3 cut(s) | 171, 369, 801 |
| Bst6I | CTCTTC | 1 cut(s) | 57 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 827 |
| BstAUI | TGTACA | 1 cut(s) | 565 |
| BstDEI | CTNAG | 3 cut(s) | 39, 447, 753 |
| BstDSI | CCRYGG | 1 cut(s) | 766 |
| BstF5I | GGATG | 4 cut(s) | 204, 358, 832, 836 |
| BstFNI | CGCG | 1 cut(s) | 33 |
| BstH2I | RGCGCY | 1 cut(s) | 742 |
| BstHHI | GCGC | 2 cut(s) | 618, 741 |
| BstKTI | GATC | 5 cut(s) | 10, 264, 360, 438, 588 |
| BstMAI | GTCTC | 3 cut(s) | 146, 642, 718 |
| BstMBI | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 827 |
| BstNI | CCWGG | 1 cut(s) | 611 |
| BstSCI | CCNGG | 1 cut(s) | 609 |
| BstSFI | CTRYAG | 1 cut(s) | 819 |
| BstUI | CGCG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 3 cut(s) | 303, 409, 805 |
| BstV2I | GAAGAC | 1 cut(s) | 549 |
| BstX2I | RGATCY | 2 cut(s) | 357, 435 |
| BstYI | RGATCY | 2 cut(s) | 357, 435 |
| BsuRI | GGCC | 1 cut(s) | 514 |
| BtgI | CCRYGG | 1 cut(s) | 766 |
| BtsCI | GGATG | 4 cut(s) | 204, 358, 832, 836 |
| BtsIMutI | CAGTG | 1 cut(s) | 176 |
| BveI | ACCTGC | 1 cut(s) | 311 |
| CfoI | GCGC | 2 cut(s) | 618, 741 |
| Cfr10I | RCCGGY | 1 cut(s) | 235 |
| Cfr13I | GGNCC | 1 cut(s) | 607 |
| Csp6I | GTAC | 2 cut(s) | 489, 566 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 531, 566 |
| CviAII | CATG | 4 cut(s) | 59, 156, 311, 519 |
| CviJI | RGCY | 7 cut(s) | 38, 181, 220, 274, 294, 514, 765 |
| CviKI_1 | RGCY | 7 cut(s) | 38, 181, 220, 274, 294, 514, 765 |
| CviQI | GTAC | 2 cut(s) | 489, 566 |
| DdeI | CTNAG | 3 cut(s) | 39, 447, 753 |
| DpnI | GATC | 5 cut(s) | 9, 263, 359, 437, 587 |
| DpnII | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| Eam1104I | CTCTTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 719 |
| Eco147I | AGGCCT | 1 cut(s) | 514 |
| Eco31I | GGTCTC | 1 cut(s) | 718 |
| Eco47I | GGWCC | 1 cut(s) | 607 |
| Eco47III | AGCGCT | 1 cut(s) | 740 |
| EcoO109I | RGGNCCY | 1 cut(s) | 607 |
| EcoRII | CCWGG | 1 cut(s) | 609 |
| EcoT14I | CCWWGG | 1 cut(s) | 719 |
| EcoT22I | ATGCAT | 3 cut(s) | 106, 206, 334 |
| ErhI | CCWWGG | 1 cut(s) | 719 |
| FaeI | CATG | 4 cut(s) | 62, 159, 314, 522 |
| FatI | CATG | 4 cut(s) | 58, 155, 310, 518 |
| FauNDI | CATATG | 1 cut(s) | 106 |
| FblI | GTMKAC | 1 cut(s) | 389 |
| Fnu4HI | GCNGC | 3 cut(s) | 292, 423, 819 |
| FokI | GGATG | 4 cut(s) | 191, 365, 823, 839 |
| Fsp4HI | GCNGC | 3 cut(s) | 292, 423, 819 |
| FspBI | CTAG | 2 cut(s) | 182, 849 |
| GlaI | GCGC | 2 cut(s) | 617, 740 |
| GluI | GCNGC | 3 cut(s) | 292, 423, 819 |
| GsaI | CCCAGC | 2 cut(s) | 486, 584 |
| HaeII | RGCGCY | 1 cut(s) | 742 |
| HaeIII | GGCC | 1 cut(s) | 514 |
| HapII | CCGG | 1 cut(s) | 236 |
| HhaI | GCGC | 2 cut(s) | 618, 741 |
| Hin1II | CATG | 4 cut(s) | 62, 159, 314, 522 |
| Hin6I | GCGC | 2 cut(s) | 616, 739 |
| HinP1I | GCGC | 2 cut(s) | 616, 739 |
| HincII | GTYRAC | 2 cut(s) | 255, 390 |
| HindII | GTYRAC | 2 cut(s) | 255, 390 |
| HinfI | GANTC | 3 cut(s) | 142, 451, 554 |
| HpaI | GTTAAC | 1 cut(s) | 255 |
| HpaII | CCGG | 1 cut(s) | 236 |
| HphI | GGTGA | 3 cut(s) | 17, 708, 782 |
| Hpy166II | GTNNAC | 2 cut(s) | 255, 390 |
| Hpy188I | TCNGA | 1 cut(s) | 450 |
| Hpy188III | TCNNGA | 1 cut(s) | 589 |
| Hpy8I | GTNNAC | 2 cut(s) | 255, 390 |
| HpyAV | CCTTC | 3 cut(s) | 337, 521, 525 |
| HpyCH4III | ACNGT | 3 cut(s) | 171, 369, 801 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 827 |
| HpyF3I | CTNAG | 3 cut(s) | 39, 447, 753 |
| Hsp92II | CATG | 4 cut(s) | 62, 159, 314, 522 |
| HspAI | GCGC | 2 cut(s) | 616, 739 |
| KspAI | GTTAAC | 1 cut(s) | 255 |
| Kzo9I | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| LmnI | GCTCC | 1 cut(s) | 736 |
| Lsp1109I | GCAGC | 3 cut(s) | 303, 409, 805 |
| LweI | GCATC | 6 cut(s) | 91, 213, 319, 452, 817, 845 |
| MaeI | CTAG | 2 cut(s) | 182, 849 |
| MalI | GATC | 5 cut(s) | 9, 263, 359, 437, 587 |
| MboI | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| MboII | GAAGA | 7 cut(s) | 74, 173, 176, 549, 736, 739, 785 |
| MflI | RGATCY | 2 cut(s) | 357, 435 |
| MluCI | AATT | 3 cut(s) | 23, 704, 730 |
| MlyI | GAGTC | 1 cut(s) | 563 |
| MmeI | TCCRAC | 1 cut(s) | 504 |
| MnlI | CCTC | 9 cut(s) | 28, 310, 583, 598, 621, 748, 751, 772, 787 |
| Mph1103I | ATGCAT | 3 cut(s) | 106, 206, 334 |
| MseI | TTAA | 4 cut(s) | 254, 744, 803, 859 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 696 |
| MspA1I | CMGCKG | 2 cut(s) | 125, 294 |
| MspI | CCGG | 1 cut(s) | 236 |
| MspR9I | CCNGG | 1 cut(s) | 611 |
| Mva1269I | GAATGC | 2 cut(s) | 484, 678 |
| MvaI | CCWGG | 1 cut(s) | 611 |
| MvnI | CGCG | 1 cut(s) | 33 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 827 |
| NdeI | CATATG | 1 cut(s) | 106 |
| NdeII | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| NlaIII | CATG | 4 cut(s) | 62, 159, 314, 522 |
| NlaIV | GGNNCC | 1 cut(s) | 135 |
| NsiI | ATGCAT | 3 cut(s) | 106, 206, 334 |
| PceI | AGGCCT | 1 cut(s) | 514 |
| PctI | GAATGC | 2 cut(s) | 484, 678 |
| PfeI | GAWTC | 2 cut(s) | 142, 451 |
| PkrI | GCNGC | 3 cut(s) | 293, 424, 820 |
| PleI | GAGTC | 1 cut(s) | 562 |
| PpsI | GAGTC | 1 cut(s) | 562 |
| PpuMI | RGGWCCY | 1 cut(s) | 607 |
| Psp5II | RGGWCCY | 1 cut(s) | 607 |
| Psp6I | CCWGG | 1 cut(s) | 609 |
| PspFI | CCCAGC | 2 cut(s) | 482, 580 |
| PspGI | CCWGG | 1 cut(s) | 609 |
| PspN4I | GGNNCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 1 cut(s) | 607 |
| PspPPI | RGGWCCY | 1 cut(s) | 607 |
| PstI | CTGCAG | 1 cut(s) | 823 |
| PsuI | RGATCY | 2 cut(s) | 357, 435 |
| PvuII | CAGCTG | 1 cut(s) | 294 |
| RsaI | GTAC | 2 cut(s) | 490, 567 |
| RsaNI | GTAC | 2 cut(s) | 489, 566 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 696 |
| SalI | GTCGAC | 1 cut(s) | 388 |
| SaqAI | TTAA | 4 cut(s) | 254, 744, 803, 859 |
| SatI | GCNGC | 3 cut(s) | 292, 423, 819 |
| Sau3AI | GATC | 5 cut(s) | 7, 261, 357, 435, 585 |
| Sau96I | GGNCC | 1 cut(s) | 607 |
| ScaI | AGTACT | 1 cut(s) | 490 |
| SchI | GAGTC | 1 cut(s) | 563 |
| ScrFI | CCNGG | 1 cut(s) | 611 |
| SfaNI | GCATC | 6 cut(s) | 91, 213, 319, 452, 817, 845 |
| SfcI | CTRYAG | 1 cut(s) | 819 |
| SgrAI | CRCCGGYG | 1 cut(s) | 235 |
| SinI | GGWCC | 1 cut(s) | 607 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 696 |
| SmlI | CTYRAG | 1 cut(s) | 275 |
| SmoI | CTYRAG | 1 cut(s) | 275 |
| SpeI | ACTAGT | 1 cut(s) | 848 |
| Sse9I | AATT | 3 cut(s) | 23, 704, 730 |
| SseBI | AGGCCT | 1 cut(s) | 514 |
| SsiI | CCGC | 2 cut(s) | 125, 503 |
| SspI | AATATT | 2 cut(s) | 418, 856 |
| SspMI | CTAG | 2 cut(s) | 182, 849 |
| StuI | AGGCCT | 1 cut(s) | 514 |
| StyD4I | CCNGG | 1 cut(s) | 609 |
| StyI | CCWWGG | 1 cut(s) | 719 |
| TaaI | ACNGT | 3 cut(s) | 171, 369, 801 |
| TaqI | TCGA | 1 cut(s) | 389 |
| TasI | AATT | 3 cut(s) | 23, 704, 730 |
| TatI | WGTACW | 2 cut(s) | 488, 565 |
| TfiI | GAWTC | 2 cut(s) | 142, 451 |
| Tru1I | TTAA | 4 cut(s) | 254, 744, 803, 859 |
| Tru9I | TTAA | 4 cut(s) | 254, 744, 803, 859 |
| TscAI | CASTG | 1 cut(s) | 176 |
| TseI | GCWGC | 3 cut(s) | 291, 422, 818 |
| TspDTI | ATGAA | 3 cut(s) | 4, 75, 507 |
| TspRI | CASTG | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 1 cut(s) | 607 |
| XapI | RAATTY | 1 cut(s) | 730 |
| XmiI | GTMKAC | 1 cut(s) | 389 |
| XspI | CTAG | 2 cut(s) | 182, 849 |
| ZrmI | AGTACT | 1 cut(s) | 490 |
| Zsp2I | ATGCAT | 3 cut(s) | 106, 206, 334 |