FvH4_3g29932

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000049
Physical Location & Seq
Forward (+)
23063672 .. 23065198
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29932.t1

Sequence Viewer

Length: 1422 bp
ATGGCTGCTGCTATTGAATCCTTGGGATCGGCTTTTCAAGCCGCTTCATCTAGACTACTGCTCTCTGACTCTTCTCGCATCAAGATCGATGTTGAGAGAGGCGGAGCTGTTCAGGAAGACCATGCTTATCTGGTGGGACGCCTTCTGGGTCCAAAAAAAAAATTTCCAAGATTCAAAGGGACGATCCCGACGATCTGGAGAATGAAGAGAGGCCTCTCGGTGTCGGATTCAGGCGACCGGGGAGATCCGGCTGCCGTCCCTCTGAATATATTAGAGACATGGGTGGCTGTGGAAGGCCTTGTTCATAATTTGAGGAACCCTAAAGCCTTAAATATGGTGGGATCTGGATTAGGTCGAGTTATTCGATTTGATCAGACTGCGCTCAAGAGAAAGGAAGAGGTTCAAAGGATCAGACTGGAGTTTGATGTGCGAAGGCGCATCCGAGTTTGGCAGGAAATTGAGTTCGAGATGGATGGAATAGTGGCAGAGGTGGATCTCACCTTTGATAAGGTGAAGGGTTTTTGCCGATTGTGTGGTTTGTTCATGCATGATGCAATGGGGTGTGATCATCTGATTCAGAAGGAGAGGGAGGCGCTGAAAGCCCCGTCGGAGGCAGCGATGAGTCATTTGCCACTATTCTCGAAGCCAATCGGACGTGCTGTGCCGAAAGCAAAGATGGCTAGGGTTTTGGCGCCTATCAATTTCAACTCACATCGTTCTGGTACATCTGGGGGTAGTGAGAATTCAGTTCTCTCCCCTATAAAAAAGTCTAGAGCTCTAGAGGTGTCATCTGATGCTACAACAACCAAAGTTCCTGCTACTGCTGTTCAGAATACAGTAATTCCGATGGCTGGAAAGGAAGTGGTGGCGATTGGTACGACCTCAGAGGTGATACCGATGGTGCTGGACAAGGGAGTGCCGAACAAGATCATTGGTAAGAAGCATAGTGGCGTGGAATGCGAGAGGACTGGGAAAAGGTACCTAAAGTTCCCCGAACCATCCTTGGATATTGTGAATGTTGGGATTGCTTTGGCTAATGACACGGGGAAGCTGATTATTTCTCCCCAGAAAAAGAAGAAGCTAGGACGTCCGTTTGGAAGCAAAAATCGTTCCAAGGAAGAGCTAGAGCTGGCAGCGGCGGCTCAACCAAAAAAGTGGAAGACCCACAAGAAAACTAACTCCTTTGGTACCAAGGGGAGCAAAGAAGCACCTAGTTCTGATGAGGGTGTGATCAAAAATCCTGCTGAGGCGAGTGATAAGGCAGATTTTGAGATGGTCACTTTCGAAGGCTCTACTTCGACTAGTGAGTTAAGGAAGGAAACTGACGGCTTTGAGGCTCCGGTGGTGGGAGTAAATGAGAGTGTTTTGCCTCAAACTGCGAAAGGGAGTGCGTCTGGCACTCTGAATCCGGAAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

474

Amino Acids

51.33

Weight (kDa)

9.61

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1090
Acc65I GGTACC 2 cut(s) 978, 1187
AccB1I GGYRCC 3 cut(s) 691, 978, 1187
AccIII TCCGGA 1 cut(s) 1408
AciI CCGC 4 cut(s) 42, 102, 1136, 1139
AclWI GGATC 6 cut(s) 34, 178, 239, 349, 416, 501
AcsI RAATTY 2 cut(s) 161, 742
AcyI GRCGYC 3 cut(s) 139, 692, 1087
AfaI GTAC 4 cut(s) 724, 877, 980, 1189
AfiI CCNNNNNNNGG 3 cut(s) 610, 851, 1346
AgsI TTSAA 5 cut(s) 17, 38, 175, 404, 706
AhlI ACTAGT 1 cut(s) 1301
AjiI CACGTC 1 cut(s) 656
AloI GAACNNNNNNTCC 2 cut(s) 446, 478
AluBI AGCT 6 cut(s) 107, 776, 1051, 1081, 1123, 1129
AluI AGCT 6 cut(s) 107, 776, 1051, 1081, 1123, 1129
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 6 cut(s) 34, 178, 239, 349, 416, 501
Aor13HI TCCGGA 1 cut(s) 1408
AoxI GGCC 2 cut(s) 211, 295
ApeKI GCWGC 5 cut(s) 5, 8, 251, 614, 1133
ApoI RAATTY 2 cut(s) 161, 742
Asp700I GAANNNNTTC 1 cut(s) 399
Asp718I GGTACC 2 cut(s) 978, 1187
AspLEI GCGC 4 cut(s) 382, 438, 595, 694
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 490, 523, 901
AsuII TTCGAA 1 cut(s) 1284
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 3 cut(s) 691, 978, 1187
BanII GRGCYC 1 cut(s) 778
BbsI GAAGAC 2 cut(s) 123, 1166
Bbv12I GWGCWC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 1245
BbvI GCAGC 3 cut(s) 238, 626, 1145
BccI CCATC 7 cut(s) 463, 467, 670, 841, 892, 1006, 1267
BceAI ACGGC 2 cut(s) 239, 1342
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BclI TGATCA 3 cut(s) 370, 565, 1230
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 269
BcuI ACTAGT 1 cut(s) 1301
BfaI CTAG 8 cut(s) 51, 681, 771, 779, 1082, 1124, 1212, 1302
BfoI RGCGCY 2 cut(s) 596, 695
BisI GCNGC 8 cut(s) 6, 9, 42, 252, 615, 1134, 1137, 1140
BlsI GCNGC 8 cut(s) 7, 10, 43, 253, 616, 1135, 1138, 1141
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 6 cut(s) 150, 317, 693, 980, 1189, 1338
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 4 cut(s) 87, 447, 541, 784
BmuI ACTGGG 1 cut(s) 978
BpiI GAAGAC 2 cut(s) 123, 1166
BpmI CTGGAG 2 cut(s) 217, 437
Bpu10I CCTNAGC 1 cut(s) 1245
Bpu14I TTCGAA 1 cut(s) 1284
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 3 cut(s) 139, 692, 1087
BsaJI CCNNGG 5 cut(s) 21, 238, 1002, 1113, 1191
BsaWI WCCGGW 2 cut(s) 1339, 1408
Bsc4I CCNNNNNNNGG 3 cut(s) 610, 851, 1346
Bse1I ACTGG 2 cut(s) 420, 973
Bse3DI GCAATG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 1408
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 5 cut(s) 21, 238, 1002, 1113, 1191
BseGI GGATG 3 cut(s) 438, 478, 998
BseLI CCNNNNNNNGG 3 cut(s) 610, 851, 1346
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 2 cut(s) 897, 1236
BseNI ACTGG 2 cut(s) 420, 973
BseXI GCAGC 3 cut(s) 238, 626, 1145
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 213, 297
BshNI GGYRCC 3 cut(s) 691, 978, 1187
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 4 cut(s) 238, 248, 1340, 1409
BslFI GGGAC 3 cut(s) 150, 193, 242
BslI CCNNNNNNNGG 3 cut(s) 610, 851, 1346
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 3 cut(s) 150, 193, 242
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 2 cut(s) 213, 297
Bsp119I TTCGAA 1 cut(s) 1284
Bsp1286I GDGCHC 1 cut(s) 778
Bsp13I TCCGGA 1 cut(s) 1408
BspACI CCGC 4 cut(s) 42, 102, 1136, 1139
BspANI GGCC 2 cut(s) 213, 297
BspCNI CTCAG 2 cut(s) 896, 1237
BspDI ATCGAT 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 1408
BspLI GGNNCC 6 cut(s) 150, 317, 693, 980, 1189, 1338
BspPI GGATC 6 cut(s) 34, 178, 239, 349, 416, 501
BspQI GCTCTTC 1 cut(s) 1113
BspT104I TTCGAA 1 cut(s) 1284
BspT107I GGYRCC 3 cut(s) 691, 978, 1187
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 2 cut(s) 420, 973
BssECI CCNNGG 5 cut(s) 21, 238, 1002, 1113, 1191
BssNI GRCGYC 3 cut(s) 139, 692, 1087
BssT1I CCWWGG 4 cut(s) 21, 1002, 1113, 1191
Bst4CI ACNGT 1 cut(s) 838
Bst6I CTCTTC 4 cut(s) 76, 200, 390, 1113
BstACI GRCGYC 3 cut(s) 139, 692, 1087
BstBI TTCGAA 1 cut(s) 1284
BstC8I GCNNGC 1 cut(s) 1131
BstDEI CTNAG 2 cut(s) 883, 1245
BstF5I GGATG 3 cut(s) 438, 478, 998
BstH2I RGCGCY 2 cut(s) 596, 695
BstHHI GCGC 4 cut(s) 382, 438, 595, 694
BstMAI GTCTC 1 cut(s) 269
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 5 cut(s) 38, 599, 677, 957, 1139
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 238, 626, 1145
BstV2I GAAGAC 2 cut(s) 123, 1166
BstX2I RGATCY 3 cut(s) 244, 341, 493
BstXI CCANNNNNNTGG 1 cut(s) 1155
BstYI RGATCY 3 cut(s) 244, 341, 493
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 2 cut(s) 213, 297
BsuTUI ATCGAT 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 632
BtrI CACGTC 1 cut(s) 656
BtsCI GGATG 3 cut(s) 438, 478, 998
Cac8I GCNNGC 1 cut(s) 1131
CfoI GCGC 4 cut(s) 382, 438, 595, 694
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 2 cut(s) 147, 1380
Csp6I GTAC 4 cut(s) 723, 876, 979, 1188
CviAII CATG 4 cut(s) 122, 279, 544, 548
CviQI GTAC 4 cut(s) 723, 876, 979, 1188
DdeI CTNAG 2 cut(s) 883, 1245
DinI GGCGCC 1 cut(s) 693
Eam1104I CTCTTC 4 cut(s) 76, 200, 390, 1113
EarI CTCTTC 4 cut(s) 76, 200, 390, 1113
EciI GGCGGA 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 776
Eco130I CCWWGG 4 cut(s) 21, 1002, 1113, 1191
Eco147I AGGCCT 2 cut(s) 213, 297
Eco24I GRGCYC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 776
EcoRI GAATTC 1 cut(s) 742
EcoT14I CCWWGG 4 cut(s) 21, 1002, 1113, 1191
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 778
EgeI GGCGCC 1 cut(s) 693
EheI GGCGCC 1 cut(s) 693
ErhI CCWWGG 4 cut(s) 21, 1002, 1113, 1191
FaeI CATG 4 cut(s) 125, 282, 547, 551
FaiI YATR 9 cut(s) 123, 269, 280, 306, 335, 545, 549, 761, 945
FaqI GGGAC 3 cut(s) 150, 193, 242
FatI CATG 4 cut(s) 121, 278, 543, 547
FbaI TGATCA 3 cut(s) 370, 565, 1230
Fnu4HI GCNGC 8 cut(s) 6, 9, 42, 252, 615, 1134, 1137, 1140
FokI GGATG 3 cut(s) 425, 485, 985
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 8 cut(s) 6, 9, 42, 252, 615, 1134, 1137, 1140
FspBI CTAG 8 cut(s) 51, 681, 771, 779, 1082, 1124, 1212, 1302
GlaI GCGC 4 cut(s) 381, 437, 594, 693
GluI GCNGC 8 cut(s) 6, 9, 42, 252, 615, 1134, 1137, 1140
GsuI CTGGAG 2 cut(s) 217, 437
HaeII RGCGCY 2 cut(s) 596, 695
HaeIII GGCC 2 cut(s) 213, 297
HapII CCGG 4 cut(s) 238, 248, 1340, 1409
HgaI GACGC 2 cut(s) 147, 1380
HhaI GCGC 4 cut(s) 382, 438, 595, 694
Hin1I GRCGYC 3 cut(s) 139, 692, 1087
Hin1II CATG 4 cut(s) 125, 282, 547, 551
Hin6I GCGC 4 cut(s) 380, 436, 593, 692
HinP1I GCGC 4 cut(s) 380, 436, 593, 692
HinfI GANTC 7 cut(s) 17, 68, 171, 227, 574, 622, 1405
HpaII CCGG 4 cut(s) 238, 248, 1340, 1409
HphI GGTGA 3 cut(s) 490, 523, 901
Hpy99I CGWCG 2 cut(s) 193, 610
HpyAV CCTTC 7 cut(s) 152, 287, 426, 508, 574, 1280, 1309
HpyCH4III ACNGT 1 cut(s) 838
HpyCH4IV ACGT 2 cut(s) 655, 1087
HpyCH4V TGCA 2 cut(s) 547, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 599, 677, 957, 1139
HpyF3I CTNAG 2 cut(s) 883, 1245
HpySE526I ACGT 2 cut(s) 655, 1087
Hsp92I GRCGYC 3 cut(s) 139, 692, 1087
Hsp92II CATG 4 cut(s) 125, 282, 547, 551
HspAI GCGC 4 cut(s) 380, 436, 593, 692
KasI GGCGCC 1 cut(s) 691
Kpn2I TCCGGA 1 cut(s) 1408
KpnI GGTACC 2 cut(s) 982, 1191
Ksp22I TGATCA 3 cut(s) 370, 565, 1230
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 3 cut(s) 104, 1197, 1342
Lsp1109I GCAGC 3 cut(s) 238, 626, 1145
LweI GCATC 4 cut(s) 87, 447, 541, 784
MaeI CTAG 8 cut(s) 51, 681, 771, 779, 1082, 1124, 1212, 1302
MaeII ACGT 2 cut(s) 655, 1087
MaeIII GTNAC 1 cut(s) 1276
MboII GAAGA 7 cut(s) 63, 128, 217, 407, 1087, 1130, 1171
MflI RGATCY 3 cut(s) 244, 341, 493
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 6 cut(s) 161, 307, 456, 700, 742, 840
Mly113I GGCGCC 1 cut(s) 692
MlyI GAGTC 2 cut(s) 62, 631
MmeI TCCRAC 2 cut(s) 204, 588
Mph1103I ATGCAT 1 cut(s) 549
MroI TCCGGA 1 cut(s) 1408
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 3 cut(s) 329, 1310, 1420
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 4 cut(s) 238, 248, 1340, 1409
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 962
MwoI GCNNNNNNNGC 5 cut(s) 38, 599, 677, 957, 1139
NarI GGCGCC 1 cut(s) 692
NciI CCSGG 1 cut(s) 239
NlaIII CATG 4 cut(s) 125, 282, 547, 551
NlaIV GGNNCC 6 cut(s) 150, 317, 693, 980, 1189, 1338
NmuCI GTSAC 1 cut(s) 1276
NsiI ATGCAT 1 cut(s) 549
NspV TTCGAA 1 cut(s) 1284
PceI AGGCCT 2 cut(s) 213, 297
PciSI GCTCTTC 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 3 cut(s) 188, 361, 614
PctI GAATGC 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 5 cut(s) 17, 171, 227, 574, 1405
PkrI GCNGC 8 cut(s) 7, 10, 43, 253, 616, 1135, 1138, 1141
PleI GAGTC 2 cut(s) 62, 630
PluTI GGCGCC 1 cut(s) 695
PpsI GAGTC 2 cut(s) 62, 630
Psp124BI GAGCTC 1 cut(s) 778
PspN4I GGNNCC 6 cut(s) 150, 317, 693, 980, 1189, 1338
PspPI GGNCC 1 cut(s) 149
PsrI GAACNNNNNNTAC 2 cut(s) 971, 1003
PsuI RGATCY 3 cut(s) 244, 341, 493
RsaI GTAC 4 cut(s) 724, 877, 980, 1189
RsaNI GTAC 4 cut(s) 723, 876, 979, 1188
SacI GAGCTC 1 cut(s) 778
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 3 cut(s) 329, 1310, 1420
SatI GCNGC 8 cut(s) 6, 9, 42, 252, 615, 1134, 1137, 1140
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 62, 631
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 4 cut(s) 87, 447, 541, 784
SfoI GGCGCC 1 cut(s) 693
SfuI TTCGAA 1 cut(s) 1284
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 1301
Sse9I AATT 6 cut(s) 161, 307, 456, 700, 742, 840
SseBI AGGCCT 2 cut(s) 213, 297
SsiI CCGC 4 cut(s) 42, 102, 1136, 1139
SspDI GGCGCC 1 cut(s) 691
SspMI CTAG 8 cut(s) 51, 681, 771, 779, 1082, 1124, 1212, 1302
SstI GAGCTC 1 cut(s) 778
StuI AGGCCT 2 cut(s) 213, 297
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 4 cut(s) 21, 1002, 1113, 1191
TaaI ACNGT 1 cut(s) 838
TaiI ACGT 2 cut(s) 658, 1090
TaqI TCGA 7 cut(s) 87, 355, 364, 465, 641, 1284, 1298
TasI AATT 6 cut(s) 161, 307, 456, 700, 742, 840
TauI GCSGC 3 cut(s) 44, 1139, 1142
TfiI GAWTC 5 cut(s) 17, 171, 227, 574, 1405
Tru1I TTAA 3 cut(s) 329, 1310, 1420
Tru9I TTAA 3 cut(s) 329, 1310, 1420
TseFI GTSAC 1 cut(s) 1276
TseI GCWGC 5 cut(s) 5, 8, 251, 614, 1133
Tsp45I GTSAC 1 cut(s) 1276
TspDTI ATGAA 4 cut(s) 36, 218, 293, 532
TspGWI ACGGA 1 cut(s) 1080
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 2 cut(s) 161, 742
XbaI TCTAGA 3 cut(s) 50, 770, 778
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 8 cut(s) 51, 681, 771, 779, 1082, 1124, 1212, 1302
ZraI GACGTC 1 cut(s) 1088
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.