Rmu_sc0017394.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017394.1
OG0000049
Physical Location & Seq
Reverse (-)
11068 .. 13738
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017394.1_g000005.1.cds

Sequence Viewer

Length: 1737 bp
atggctgaaggcctaatggattcgaacttgccattgatcaattcagactcatccttggttgcactgggggctgcaggggctggggctattcaggtcgaccaatggcttctggttggacgcttgttggccccaaaagccagtctgccggggttcaagggaactatatcgacgatatggaggctcagatcgggccttaccatccaagacgcaggtgagcgttttgtgtttcaatttgagaccgaggcaatacgtaatcgtattttacatgggggtccttggttttaccataacactatgttggtggtgggagattatgatggtctcagcccgatagaggaggtgccactgaacatgatggaatcatgggtggtggtgaagggactgccgtttggactgagaaacaagaaggcgcttactttgattggagcgtccttgggatcgatggtccgagtggatcaaaatgcagtgcagcggagagaggccgaacagaggatcaaggttgtgttcgatgtccgtcgtcgggtacgtacctggaaggtgtttaaattttctccaatggtgaaaccggagttgaccttcatctatgagaaggttaagggtttctgtcgcgactgtgggctgttcacccatgatgcacttggttgtgataagcttctcaccaaagagaaagaggagatgcagactgtttcgtccgtgtctgctatggcgggtctatctttggtttcggtagtagcggctagttctgtcccagcgttaccgggacgggttgtggagaaggtaagcgggaatcgtaagagtgataccgctctagttcatttggagactgcttcgggttcttcaggtgagggggcaattagtactgggaagagtggccgtgcagtgtttccctttggttccaagatgatggggagtcccattattttggaccacactttggctaatttcaaacatgcgagcttcttgcaaccttgtatgacacttcctcttgtccagggggaggtaagtcctgagcagctcatattggcttctggtccaactgtgcctagaaagacttctgctcttgtggagttttcatccatgcaagtggaacagctacggaagaaaagaaaggctgtggcgtgtttggaccactttggaaagaaatatttggctttgccggattcaattgaggttgaggagaatgtttctttgattctgcaacataagaatggcaagtttttgatctcaccaaagaagaagaaactagggcgtccgcagggaagcaagaatagaatgaaagccttggatgaacaggaagtgaaaaagattcgcaaatataagcgtcgtgggaaagctttgggatttgattcaaagcttgatgttaatgcgtctgaagtggctagtgtgcatgtgggggagagtgaggtaactctgctgaaggagtccgttactgcagaggttattattcttgttttctcacaattttgtctttccaagtctctaacaatggctacaggaccttcttcaacctctcatcctttaaccttaggggaaggtgccggatttcgtgcagataacacaaatttgcggaaggagaacaagttccttttggtgactaaggttctcactgatgaagttcttaggccggatgacttcatgcgccagattaccaaattatggaagtttgctaaaggattggtggtgaaggccattgacaacaatctcttcctcttttgctttactttgatgagccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

578

Amino Acids

63.55

Weight (kDa)

9.61

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 200
AasI GACNNNNNNGTC 1 cut(s) 688
Acc36I ACCTGC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 340, 1535
AccB7I CCANNNNNTGG 2 cut(s) 934, 1656
AccBSI CCGCTC 1 cut(s) 806
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 609
AciI CCGC 7 cut(s) 472, 707, 734, 783, 804, 1253, 1567
AclWI GGATC 3 cut(s) 445, 462, 500
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 2 cut(s) 545, 1561
AcuI CTGAAG 4 cut(s) 27, 822, 1392, 1436
AcyI GRCGYC 1 cut(s) 1249
AfaI GTAC 3 cut(s) 525, 529, 859
AfiI CCNNNNNNNGG 6 cut(s) 334, 489, 520, 934, 997, 1656
AgsI TTSAA 6 cut(s) 154, 230, 946, 1164, 1350, 1506
AjnI CCWGG 2 cut(s) 530, 990
AloI GAACNNNNNNTCC 2 cut(s) 1565, 1597
AluBI AGCT 6 cut(s) 652, 957, 1015, 1093, 1334, 1354
AluI AGCT 6 cut(s) 652, 957, 1015, 1093, 1334, 1354
Alw26I GTCTC 4 cut(s) 230, 326, 815, 1482
AlwI GGATC 3 cut(s) 445, 462, 500
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 7 cut(s) 10, 126, 190, 480, 871, 1622, 1686
ApeKI GCWGC 3 cut(s) 71, 469, 1012
ApoI RAATTY 2 cut(s) 545, 1561
Asp700I GAANNNNTTC 2 cut(s) 1051, 1580
AspLEI GCGC 2 cut(s) 412, 1641
AspS9I GGNCC 8 cut(s) 127, 190, 272, 445, 925, 1031, 1126, 1496
AsuC2I CCSGG 2 cut(s) 147, 759
AsuHPI GGTGA 9 cut(s) 224, 385, 571, 616, 649, 854, 1218, 1603, 1693
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 6 cut(s) 272, 445, 925, 1031, 1126, 1496
AxyI CCTNAGG 1 cut(s) 1525
BanI GGYRCC 2 cut(s) 340, 1535
BbvI GCAGC 3 cut(s) 58, 481, 1024
BccI CCATC 5 cut(s) 206, 311, 349, 436, 898
BceAI ACGGC 2 cut(s) 370, 858
BcgI CGANNNNNNTGC 2 cut(s) 943, 977
BciT130I CCWGG 2 cut(s) 532, 992
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 2 cut(s) 147, 759
BcoDI GTCTC 4 cut(s) 230, 326, 815, 1482
BfaI CTAG 5 cut(s) 738, 809, 1044, 1244, 1380
BfmI CTRYAG 3 cut(s) 72, 1431, 1491
BfoI RGCGCY 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 200
BisI GCNGC 4 cut(s) 72, 470, 735, 1013
BlsI GCNGC 4 cut(s) 73, 471, 736, 1014
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 4 cut(s) 147, 532, 759, 992
Bme18I GGWCC 6 cut(s) 272, 445, 925, 1031, 1126, 1496
BmgT120I GGNCC 8 cut(s) 127, 190, 272, 445, 925, 1031, 1126, 1496
BmiI GGNNCC 5 cut(s) 129, 273, 342, 895, 1537
BmrFI CCNGG 4 cut(s) 147, 532, 759, 992
BmrI ACTGGG 2 cut(s) 74, 870
BmsI GCATC 2 cut(s) 622, 666
BmuI ACTGGG 2 cut(s) 74, 870
Bpu10I CCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 147, 759
Bsa29I ATCGAT 1 cut(s) 440
BsaAI YACGTR 2 cut(s) 251, 527
BsaHI GRCGYC 1 cut(s) 1249
BsaI GGTCTC 2 cut(s) 230, 326
BsaJI CCNNGG 7 cut(s) 54, 146, 240, 275, 432, 991, 1281
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 1565, 1595
Bsc4I CCNNNNNNNGG 6 cut(s) 334, 489, 520, 934, 997, 1656
Bse1I ACTGG 3 cut(s) 69, 138, 865
Bse21I CCTNAGG 1 cut(s) 1525
BseBI CCWGG 2 cut(s) 532, 992
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 7 cut(s) 54, 146, 240, 275, 432, 991, 1281
BseGI GGATG 6 cut(s) 50, 198, 1073, 1291, 1513, 1633
BseLI CCNNNNNNNGG 6 cut(s) 334, 489, 520, 934, 997, 1656
BseMII CTCAG 4 cut(s) 196, 337, 386, 999
BseNI ACTGG 3 cut(s) 69, 138, 865
BseRI GAGGAG 3 cut(s) 350, 686, 1190
BseXI GCAGC 3 cut(s) 58, 481, 1024
BseYI CCCAGC 2 cut(s) 80, 748
BsgI GTGCAG 3 cut(s) 488, 897, 1569
Bsh1236I CGCG 1 cut(s) 609
BshFI GGCC 7 cut(s) 12, 128, 192, 482, 873, 1624, 1688
BshNI GGYRCC 2 cut(s) 340, 1535
BshVI ATCGAT 1 cut(s) 440
BsiSI CCGG 6 cut(s) 146, 566, 758, 1157, 1539, 1625
BslFI GGGAC 4 cut(s) 393, 731, 774, 897
BslI CCNNNNNNNGG 6 cut(s) 334, 489, 520, 934, 997, 1656
BsmAI GTCTC 4 cut(s) 230, 326, 815, 1482
BsmFI GGGAC 4 cut(s) 393, 731, 774, 897
BsnI GGCC 7 cut(s) 12, 128, 192, 482, 873, 1624, 1688
Bso31I GGTCTC 2 cut(s) 230, 326
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
Bsp68I TCGCGA 1 cut(s) 609
BspACI CCGC 7 cut(s) 472, 707, 734, 783, 804, 1253, 1567
BspANI GGCC 7 cut(s) 12, 128, 192, 482, 873, 1624, 1688
BspCNI CTCAG 4 cut(s) 195, 336, 387, 1000
BspDI ATCGAT 1 cut(s) 440
BspFNI CGCG 1 cut(s) 609
BspLI GGNNCC 5 cut(s) 129, 273, 342, 895, 1537
BspMAI CTGCAG 2 cut(s) 76, 1435
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 3 cut(s) 445, 462, 500
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 2 cut(s) 340, 1535
BspTNI GGTCTC 2 cut(s) 230, 326
BsrBI CCGCTC 1 cut(s) 806
BsrI ACTGG 3 cut(s) 69, 138, 865
BssECI CCNNGG 7 cut(s) 54, 146, 240, 275, 432, 991, 1281
BssMI GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
BssNI GRCGYC 1 cut(s) 1249
BssT1I CCWWGG 4 cut(s) 54, 275, 432, 1281
Bst2UI CCWGG 2 cut(s) 532, 992
Bst4CI ACNGT 3 cut(s) 614, 685, 1039
Bst6I CTCTTC 2 cut(s) 860, 1709
BstACI GRCGYC 1 cut(s) 1249
BstBAI YACGTR 2 cut(s) 251, 527
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 7 cut(s) 182, 323, 395, 1008, 1525, 1596, 1619
BstF5I GGATG 6 cut(s) 50, 198, 1073, 1291, 1513, 1633
BstFNI CGCG 1 cut(s) 609
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 2 cut(s) 412, 1641
BstKTI GATC 6 cut(s) 39, 188, 440, 457, 495, 1224
BstMAI GTCTC 4 cut(s) 230, 326, 815, 1482
BstMBI GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 134
BstNI CCWGG 2 cut(s) 532, 992
BstNSI RCATGY 2 cut(s) 953, 1391
BstSCI CCNGG 4 cut(s) 145, 530, 757, 990
BstSFI CTRYAG 3 cut(s) 72, 1431, 1491
BstSNI TACGTA 2 cut(s) 251, 527
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 3 cut(s) 58, 481, 1024
BstXI CCANNNNNNTGG 3 cut(s) 904, 922, 1084
Bsu15I ATCGAT 1 cut(s) 440
Bsu36I CCTNAGG 1 cut(s) 1525
BsuRI GGCC 7 cut(s) 12, 128, 192, 482, 873, 1624, 1688
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 6 cut(s) 50, 198, 1073, 1291, 1513, 1633
BtsI GCAGTG 2 cut(s) 471, 885
BtsIMutI CAGTG 5 cut(s) 62, 344, 471, 885, 1605
BtuMI TCGCGA 1 cut(s) 609
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 955
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 2 cut(s) 412, 1641
Cfr13I GGNCC 8 cut(s) 127, 190, 272, 445, 925, 1031, 1126, 1496
ClaI ATCGAT 1 cut(s) 440
CseI GACGC 6 cut(s) 126, 215, 417, 1238, 1310, 1356
Csp6I GTAC 3 cut(s) 524, 528, 858
CviAII CATG 8 cut(s) 266, 352, 363, 629, 950, 1078, 1388, 1636
CviQI GTAC 3 cut(s) 524, 528, 858
DdeI CTNAG 7 cut(s) 182, 323, 395, 1008, 1525, 1596, 1619
DpnI GATC 6 cut(s) 38, 187, 439, 456, 494, 1223
DpnII GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
DraI TTTAAA 1 cut(s) 544
DrdI GACNNNNNNGTC 1 cut(s) 688
DseDI GACNNNNNNGTC 1 cut(s) 688
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 860, 1709
EarI CTCTTC 2 cut(s) 860, 1709
Eco105I TACGTA 2 cut(s) 251, 527
Eco130I CCWWGG 4 cut(s) 54, 275, 432, 1281
Eco147I AGGCCT 1 cut(s) 12
Eco31I GGTCTC 2 cut(s) 230, 326
Eco47I GGWCC 6 cut(s) 272, 445, 925, 1031, 1126, 1496
Eco57I CTGAAG 4 cut(s) 27, 822, 1392, 1436
Eco81I CCTNAGG 1 cut(s) 1525
EcoO109I RGGNCCY 2 cut(s) 272, 1496
EcoRII CCWGG 2 cut(s) 530, 990
EcoT14I CCWWGG 4 cut(s) 54, 275, 432, 1281
ErhI CCWWGG 4 cut(s) 54, 275, 432, 1281
FaeI CATG 8 cut(s) 269, 355, 366, 632, 953, 1081, 1391, 1639
FaqI GGGAC 4 cut(s) 393, 731, 774, 897
FatI CATG 8 cut(s) 265, 351, 362, 628, 949, 1077, 1387, 1635
FauI CCCGC 2 cut(s) 700, 776
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 72, 470, 735, 1013
FokI GGATG 6 cut(s) 37, 185, 1060, 1298, 1500, 1640
Fsp4HI GCNGC 4 cut(s) 72, 470, 735, 1013
FspBI CTAG 5 cut(s) 738, 809, 1044, 1244, 1380
GlaI GCGC 2 cut(s) 411, 1640
GluI GCNGC 4 cut(s) 72, 470, 735, 1013
GsaI CCCAGC 2 cut(s) 84, 752
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 7 cut(s) 12, 128, 192, 482, 873, 1624, 1688
HapII CCGG 6 cut(s) 146, 566, 758, 1157, 1539, 1625
HgaI GACGC 6 cut(s) 126, 215, 417, 1238, 1310, 1356
HhaI GCGC 2 cut(s) 412, 1641
Hin1I GRCGYC 1 cut(s) 1249
Hin1II CATG 8 cut(s) 269, 355, 366, 632, 953, 1081, 1391, 1639
Hin6I GCGC 2 cut(s) 410, 1639
HinP1I GCGC 2 cut(s) 410, 1639
HincII GTYRAC 2 cut(s) 97, 573
HindII GTYRAC 2 cut(s) 97, 573
HindIII AAGCTT 3 cut(s) 650, 1332, 1352
HpaII CCGG 6 cut(s) 146, 566, 758, 1157, 1539, 1625
HphI GGTGA 9 cut(s) 224, 385, 571, 616, 649, 854, 1218, 1603, 1693
Hpy166II GTNNAC 3 cut(s) 97, 573, 624
Hpy188I TCNGA 4 cut(s) 46, 185, 449, 1372
Hpy188III TCNNGA 2 cut(s) 608, 1007
Hpy8I GTNNAC 3 cut(s) 97, 573, 624
Hpy99I CGWCG 4 cut(s) 172, 519, 522, 1326
HpyCH4III ACNGT 3 cut(s) 614, 685, 1039
HpyCH4IV ACGT 2 cut(s) 250, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 134
HpyF3I CTNAG 7 cut(s) 182, 323, 395, 1008, 1525, 1596, 1619
HpySE526I ACGT 2 cut(s) 250, 526
Hsp92I GRCGYC 1 cut(s) 1249
Hsp92II CATG 8 cut(s) 269, 355, 366, 632, 953, 1081, 1391, 1639
HspAI GCGC 2 cut(s) 410, 1639
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 3 cut(s) 58, 481, 1024
LweI GCATC 2 cut(s) 622, 666
MaeI CTAG 5 cut(s) 738, 809, 1044, 1244, 1380
MaeII ACGT 2 cut(s) 250, 526
MaeIII GTNAC 4 cut(s) 753, 1405, 1426, 1591
MalI GATC 6 cut(s) 38, 187, 439, 456, 494, 1223
MbiI CCGCTC 1 cut(s) 806
MboI GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
MboII GAAGA 7 cut(s) 828, 877, 1111, 1246, 1249, 1494, 1696
MfeI CAATTG 1 cut(s) 1164
MluCI AATT 9 cut(s) 40, 230, 545, 852, 940, 1164, 1460, 1561, 1652
MlyI GAGTC 3 cut(s) 41, 919, 1430
MmeI TCCRAC 2 cut(s) 94, 1058
MroXI GAANNNNTTC 2 cut(s) 1051, 1580
MseI TTAA 4 cut(s) 543, 594, 1362, 1520
MslI CAYNNNNRTG 2 cut(s) 1082, 1206
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 6 cut(s) 146, 566, 758, 1157, 1539, 1625
MspR9I CCNGG 4 cut(s) 147, 532, 759, 992
MunI CAATTG 1 cut(s) 1164
MvaI CCWGG 2 cut(s) 532, 992
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 134
NciI CCSGG 2 cut(s) 147, 759
NdeII GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
NlaIII CATG 8 cut(s) 269, 355, 366, 632, 953, 1081, 1391, 1639
NlaIV GGNNCC 5 cut(s) 129, 273, 342, 895, 1537
NmuCI GTSAC 1 cut(s) 1591
NruI TCGCGA 1 cut(s) 609
NspI RCATGY 2 cut(s) 953, 1391
NspV TTCGAA 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 200
PceI AGGCCT 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PdmI GAANNNNTTC 2 cut(s) 1051, 1580
PfeI GAWTC 7 cut(s) 20, 359, 787, 1160, 1192, 1306, 1346
PflMI CCANNNNNTGG 2 cut(s) 934, 1656
PkrI GCNGC 4 cut(s) 73, 471, 736, 1014
PleI GAGTC 3 cut(s) 41, 918, 1429
PpsI GAGTC 3 cut(s) 41, 918, 1429
Ppu21I YACGTR 2 cut(s) 251, 527
PpuMI RGGWCCY 2 cut(s) 272, 1496
Psp5II RGGWCCY 2 cut(s) 272, 1496
Psp6I CCWGG 2 cut(s) 530, 990
PspFI CCCAGC 2 cut(s) 80, 748
PspGI CCWGG 2 cut(s) 530, 990
PspN4I GGNNCC 5 cut(s) 129, 273, 342, 895, 1537
PspPI GGNCC 8 cut(s) 127, 190, 272, 445, 925, 1031, 1126, 1496
PspPPI RGGWCCY 2 cut(s) 272, 1496
PstI CTGCAG 2 cut(s) 76, 1435
PstNI CAGNNNCTG 1 cut(s) 80
RruI TCGCGA 1 cut(s) 609
RsaI GTAC 3 cut(s) 525, 529, 859
RsaNI GTAC 3 cut(s) 524, 528, 858
RseI CAYNNNNRTG 2 cut(s) 1082, 1206
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 543, 594, 1362, 1520
SatI GCNGC 4 cut(s) 72, 470, 735, 1013
Sau3AI GATC 6 cut(s) 36, 185, 437, 454, 492, 1221
Sau96I GGNCC 8 cut(s) 127, 190, 272, 445, 925, 1031, 1126, 1496
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 3 cut(s) 41, 919, 1430
ScrFI CCNGG 4 cut(s) 147, 532, 759, 992
SfaNI GCATC 2 cut(s) 622, 666
SfcI CTRYAG 3 cut(s) 72, 1431, 1491
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 6 cut(s) 272, 445, 925, 1031, 1126, 1496
SmiMI CAYNNNNRTG 2 cut(s) 1082, 1206
SnaBI TACGTA 2 cut(s) 251, 527
Sse9I AATT 9 cut(s) 40, 230, 545, 852, 940, 1164, 1460, 1561, 1652
SseBI AGGCCT 1 cut(s) 12
SsiI CCGC 7 cut(s) 472, 707, 734, 783, 804, 1253, 1567
SspI AATATT 1 cut(s) 1145
SspMI CTAG 5 cut(s) 738, 809, 1044, 1244, 1380
StuI AGGCCT 1 cut(s) 12
StyD4I CCNGG 4 cut(s) 145, 530, 757, 990
StyI CCWWGG 4 cut(s) 54, 275, 432, 1281
TaaI ACNGT 3 cut(s) 614, 685, 1039
TaiI ACGT 2 cut(s) 253, 529
TaqI TCGA 5 cut(s) 23, 96, 167, 440, 507
TaqII GACCGA 1 cut(s) 254
TasI AATT 9 cut(s) 40, 230, 545, 852, 940, 1164, 1460, 1561, 1652
TatI WGTACW 1 cut(s) 857
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 7 cut(s) 20, 359, 787, 1160, 1192, 1306, 1346
Tru1I TTAA 4 cut(s) 543, 594, 1362, 1520
Tru9I TTAA 4 cut(s) 543, 594, 1362, 1520
TscAI CASTG 5 cut(s) 69, 351, 471, 885, 1612
TseFI GTSAC 1 cut(s) 1591
TseI GCWGC 3 cut(s) 71, 469, 1012
Tsp45I GTSAC 1 cut(s) 1591
TspDTI ATGAA 7 cut(s) 568, 803, 1062, 1289, 1302, 1624, 1626
TspGWI ACGGA 4 cut(s) 503, 682, 1111, 1414
TspRI CASTG 5 cut(s) 69, 351, 471, 885, 1612
Van91I CCANNNNNTGG 2 cut(s) 934, 1656
VpaK11BI GGWCC 6 cut(s) 272, 445, 925, 1031, 1126, 1496
XapI RAATTY 2 cut(s) 545, 1561
XceI RCATGY 2 cut(s) 953, 1391
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 2 cut(s) 1051, 1580
XspI CTAG 5 cut(s) 738, 809, 1044, 1244, 1380
ZrmI AGTACT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.