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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 248 |
| AatII | GACGTC | 1 cut(s) | 128 |
| AccI | GTMKAC | 1 cut(s) | 175 |
| AccII | CGCG | 1 cut(s) | 75 |
| AciI | CCGC | 3 cut(s) | 20, 75, 382 |
| AcyI | GRCGYC | 1 cut(s) | 125 |
| AfaI | GTAC | 1 cut(s) | 217 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 403, 404 |
| AgsI | TTSAA | 1 cut(s) | 358 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 371, 403 |
| AluBI | AGCT | 6 cut(s) | 135, 159, 523, 527, 544, 548 |
| AluI | AGCT | 6 cut(s) | 135, 159, 523, 527, 544, 548 |
| Alw21I | GWGCWC | 1 cut(s) | 137 |
| Alw26I | GTCTC | 1 cut(s) | 611 |
| AoxI | GGCC | 1 cut(s) | 406 |
| AseI | ATTAAT | 1 cut(s) | 312 |
| AspS9I | GGNCC | 1 cut(s) | 406 |
| AsuC2I | CCSGG | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 2 cut(s) | 223, 276 |
| AsuNHI | GCTAGC | 2 cut(s) | 523, 544 |
| BanII | GRGCYC | 1 cut(s) | 137 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 208, 240 |
| BbsI | GAAGAC | 2 cut(s) | 499, 602 |
| Bbv12I | GWGCWC | 1 cut(s) | 137 |
| BccI | CCATC | 2 cut(s) | 250, 481 |
| BcnI | CCSGG | 1 cut(s) | 180 |
| BcoDI | GTCTC | 1 cut(s) | 611 |
| BfaI | CTAG | 4 cut(s) | 185, 369, 524, 545 |
| BmcAI | AGTACT | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 1 cut(s) | 406 |
| BmrFI | CCNGG | 1 cut(s) | 180 |
| BmrI | ACTGGG | 2 cut(s) | 217, 413 |
| BmtI | GCTAGC | 2 cut(s) | 527, 548 |
| BmuI | ACTGGG | 2 cut(s) | 217, 413 |
| BpiI | GAAGAC | 2 cut(s) | 499, 602 |
| Bpu10I | CCTNAGC | 1 cut(s) | 528 |
| BpuMI | CCSGG | 1 cut(s) | 180 |
| BsaBI | GATNNNNATC | 1 cut(s) | 53 |
| BsaHI | GRCGYC | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 1 cut(s) | 179 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 403, 404 |
| Bse1I | ACTGG | 2 cut(s) | 212, 408 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 53 |
| BseDI | CCNNGG | 1 cut(s) | 179 |
| BseGI | GGATG | 2 cut(s) | 304, 310 |
| BseJI | GATNNNNATC | 1 cut(s) | 53 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 403, 404 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 4 cut(s) | 122, 542, 606, 630 |
| BseNI | ACTGG | 2 cut(s) | 212, 408 |
| Bsh1236I | CGCG | 1 cut(s) | 75 |
| BshFI | GGCC | 1 cut(s) | 408 |
| BsiHKAI | GWGCWC | 1 cut(s) | 137 |
| BsiSI | CCGG | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 403, 404 |
| BsmAI | GTCTC | 1 cut(s) | 611 |
| BsnI | GGCC | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 1 cut(s) | 137 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| BspACI | CCGC | 3 cut(s) | 20, 75, 382 |
| BspANI | GGCC | 1 cut(s) | 408 |
| BspCNI | CTCAG | 4 cut(s) | 123, 541, 607, 631 |
| BspFNI | CGCG | 1 cut(s) | 75 |
| BspOI | GCTAGC | 2 cut(s) | 527, 548 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrI | ACTGG | 2 cut(s) | 212, 408 |
| BssECI | CCNNGG | 1 cut(s) | 179 |
| BssMI | GATC | 1 cut(s) | 70 |
| BssNAI | GTATAC | 1 cut(s) | 176 |
| BssNI | GRCGYC | 1 cut(s) | 125 |
| Bst1107I | GTATAC | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 1 cut(s) | 562 |
| Bst6I | CTCTTC | 1 cut(s) | 338 |
| BstACI | GRCGYC | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 2 cut(s) | 525, 546 |
| BstDEI | CTNAG | 7 cut(s) | 81, 131, 160, 474, 528, 615, 639 |
| BstF5I | GGATG | 2 cut(s) | 304, 310 |
| BstFNI | CGCG | 1 cut(s) | 75 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMAI | GTCTC | 1 cut(s) | 611 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstSCI | CCNGG | 1 cut(s) | 178 |
| BstUI | CGCG | 1 cut(s) | 75 |
| BstV2I | GAAGAC | 2 cut(s) | 499, 602 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BstZ17I | GTATAC | 1 cut(s) | 176 |
| BsuRI | GGCC | 1 cut(s) | 408 |
| BtgZI | GCGATG | 1 cut(s) | 62 |
| BtsCI | GGATG | 2 cut(s) | 304, 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 128 |
| Cac8I | GCNNGC | 2 cut(s) | 525, 546 |
| Cfr13I | GGNCC | 1 cut(s) | 406 |
| Csp6I | GTAC | 1 cut(s) | 216 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 144, 179 |
| CviAII | CATG | 2 cut(s) | 233, 452 |
| CviQI | GTAC | 1 cut(s) | 216 |
| DdeI | CTNAG | 7 cut(s) | 81, 131, 160, 474, 528, 615, 639 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| Eam1104I | CTCTTC | 1 cut(s) | 338 |
| EarI | CTCTTC | 1 cut(s) | 338 |
| Ecl136II | GAGCTC | 1 cut(s) | 135 |
| Eco24I | GRGCYC | 1 cut(s) | 137 |
| Eco53kI | GAGCTC | 1 cut(s) | 135 |
| EcoICRI | GAGCTC | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 1 cut(s) | 137 |
| FaeI | CATG | 2 cut(s) | 236, 455 |
| FaiI | YATR | 9 cut(s) | 104, 176, 200, 234, 248, 296, 447, 453, 603 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 371, 403 |
| FatI | CATG | 2 cut(s) | 232, 451 |
| FblI | GTMKAC | 1 cut(s) | 175 |
| FokI | GGATG | 2 cut(s) | 311, 317 |
| FriOI | GRGCYC | 1 cut(s) | 137 |
| FspBI | CTAG | 4 cut(s) | 185, 369, 524, 545 |
| HaeIII | GGCC | 1 cut(s) | 408 |
| HapII | CCGG | 1 cut(s) | 179 |
| Hin1I | GRCGYC | 1 cut(s) | 125 |
| Hin1II | CATG | 2 cut(s) | 236, 455 |
| HincII | GTYRAC | 1 cut(s) | 458 |
| HindII | GTYRAC | 1 cut(s) | 458 |
| HindIII | AAGCTT | 1 cut(s) | 157 |
| HinfI | GANTC | 3 cut(s) | 362, 372, 598 |
| HpaII | CCGG | 1 cut(s) | 179 |
| HphI | GGTGA | 2 cut(s) | 223, 276 |
| Hpy166II | GTNNAC | 2 cut(s) | 176, 458 |
| Hpy188I | TCNGA | 3 cut(s) | 441, 585, 616 |
| Hpy188III | TCNNGA | 3 cut(s) | 239, 376, 530 |
| Hpy8I | GTNNAC | 2 cut(s) | 176, 458 |
| HpyAV | CCTTC | 3 cut(s) | 110, 291, 416 |
| HpyCH4III | ACNGT | 1 cut(s) | 562 |
| HpyCH4IV | ACGT | 2 cut(s) | 125, 580 |
| HpyCH4V | TGCA | 1 cut(s) | 194 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 7 cut(s) | 81, 131, 160, 474, 528, 615, 639 |
| HpySE526I | ACGT | 2 cut(s) | 125, 580 |
| Hsp92I | GRCGYC | 1 cut(s) | 125 |
| Hsp92II | CATG | 2 cut(s) | 236, 455 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LmnI | GCTCC | 2 cut(s) | 39, 140 |
| LpnPI | CCDG | 9 cut(s) | 48, 192, 193, 279, 300, 321, 389, 411, 515 |
| MaeI | CTAG | 4 cut(s) | 185, 369, 524, 545 |
| MaeII | ACGT | 2 cut(s) | 125, 580 |
| MaeIII | GTNAC | 2 cut(s) | 126, 274 |
| MalI | GATC | 1 cut(s) | 72 |
| MboI | GATC | 1 cut(s) | 70 |
| MfeI | CAATTG | 1 cut(s) | 414 |
| MhlI | GDGCHC | 1 cut(s) | 137 |
| MluCI | AATT | 1 cut(s) | 414 |
| MlyI | GAGTC | 2 cut(s) | 356, 592 |
| MnlI | CCTC | 5 cut(s) | 240, 295, 339, 419, 634 |
| MseI | TTAA | 1 cut(s) | 312 |
| MspI | CCGG | 1 cut(s) | 179 |
| MspR9I | CCNGG | 1 cut(s) | 180 |
| MunI | CAATTG | 1 cut(s) | 414 |
| MvnI | CGCG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NciI | CCSGG | 1 cut(s) | 180 |
| NdeII | GATC | 1 cut(s) | 70 |
| NheI | GCTAGC | 2 cut(s) | 523, 544 |
| NlaIII | CATG | 2 cut(s) | 236, 455 |
| NmuCI | GTSAC | 1 cut(s) | 126 |
| PfeI | GAWTC | 1 cut(s) | 372 |
| PleI | GAGTC | 2 cut(s) | 356, 592 |
| PpsI | GAGTC | 2 cut(s) | 356, 592 |
| PshBI | ATTAAT | 1 cut(s) | 312 |
| PsiI | TTATAA | 1 cut(s) | 248 |
| Psp124BI | GAGCTC | 1 cut(s) | 137 |
| PspPI | GGNCC | 1 cut(s) | 406 |
| RsaI | GTAC | 1 cut(s) | 217 |
| RsaNI | GTAC | 1 cut(s) | 216 |
| SacI | GAGCTC | 1 cut(s) | 137 |
| SaqAI | TTAA | 1 cut(s) | 312 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| Sau96I | GGNCC | 1 cut(s) | 406 |
| ScaI | AGTACT | 1 cut(s) | 217 |
| SchI | GAGTC | 2 cut(s) | 356, 592 |
| ScrFI | CCNGG | 1 cut(s) | 180 |
| SduI | GDGCHC | 1 cut(s) | 137 |
| Sse9I | AATT | 1 cut(s) | 414 |
| SsiI | CCGC | 3 cut(s) | 20, 75, 382 |
| SspMI | CTAG | 4 cut(s) | 185, 369, 524, 545 |
| SstI | GAGCTC | 1 cut(s) | 137 |
| StyD4I | CCNGG | 1 cut(s) | 178 |
| TaaI | ACNGT | 1 cut(s) | 562 |
| TaiI | ACGT | 2 cut(s) | 128, 583 |
| TaqI | TCGA | 1 cut(s) | 375 |
| TasI | AATT | 1 cut(s) | 414 |
| TatI | WGTACW | 1 cut(s) | 215 |
| TfiI | GAWTC | 1 cut(s) | 372 |
| Tru1I | TTAA | 1 cut(s) | 312 |
| Tru9I | TTAA | 1 cut(s) | 312 |
| TscAI | CASTG | 1 cut(s) | 135 |
| TseFI | GTSAC | 1 cut(s) | 126 |
| Tsp45I | GTSAC | 1 cut(s) | 126 |
| TspDTI | ATGAA | 2 cut(s) | 215, 435 |
| TspRI | CASTG | 1 cut(s) | 135 |
| VspI | ATTAAT | 1 cut(s) | 312 |
| XmiI | GTMKAC | 1 cut(s) | 175 |
| XspI | CTAG | 4 cut(s) | 185, 369, 524, 545 |
| ZraI | GACGTC | 1 cut(s) | 126 |
| ZrmI | AGTACT | 1 cut(s) | 217 |