Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 377 |
| AciI | CCGC | 3 cut(s) | 233, 427, 767 |
| AcoI | YGGCCR | 1 cut(s) | 89 |
| AcyI | GRCGYC | 1 cut(s) | 31 |
| AfaI | GTAC | 3 cut(s) | 205, 442, 645 |
| AgsI | TTSAA | 2 cut(s) | 67, 538 |
| AjnI | CCWGG | 2 cut(s) | 58, 443 |
| AluBI | AGCT | 4 cut(s) | 555, 589, 750, 794 |
| AluI | AGCT | 4 cut(s) | 555, 589, 750, 794 |
| Alw26I | GTCTC | 1 cut(s) | 516 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 525 |
| Ama87I | CYCGRG | 1 cut(s) | 38 |
| AoxI | GGCC | 3 cut(s) | 41, 89, 529 |
| ApeKI | GCWGC | 2 cut(s) | 175, 555 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 64, 96 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 588 |
| AspLEI | GCGC | 2 cut(s) | 175, 777 |
| AspS9I | GGNCC | 2 cut(s) | 41, 185 |
| AsuHPI | GGTGA | 3 cut(s) | 233, 583, 682 |
| AvaI | CYCGRG | 1 cut(s) | 38 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| BanII | GRGCYC | 1 cut(s) | 710 |
| BbvI | GCAGC | 2 cut(s) | 162, 542 |
| BciT130I | CCWGG | 2 cut(s) | 60, 445 |
| BclI | TGATCA | 2 cut(s) | 148, 367 |
| BcoDI | GTCTC | 1 cut(s) | 516 |
| BfmI | CTRYAG | 2 cut(s) | 517, 723 |
| BfoI | RGCGCY | 2 cut(s) | 176, 778 |
| BglII | AGATCT | 1 cut(s) | 273 |
| BisI | GCNGC | 2 cut(s) | 176, 556 |
| BlsI | GCNGC | 2 cut(s) | 177, 557 |
| Bme1390I | CCNGG | 2 cut(s) | 60, 445 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmeT110I | CYCGRG | 1 cut(s) | 38 |
| BmgT120I | GGNCC | 2 cut(s) | 41, 185 |
| BmiI | GGNNCC | 1 cut(s) | 709 |
| BmrFI | CCNGG | 2 cut(s) | 60, 445 |
| BmsI | GCATC | 5 cut(s) | 109, 220, 412, 535, 689 |
| BpmI | CTGGAG | 1 cut(s) | 144 |
| BsaHI | GRCGYC | 1 cut(s) | 31 |
| BsaJI | CCNNGG | 2 cut(s) | 188, 639 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 605, 635 |
| Bse1I | ACTGG | 3 cut(s) | 303, 599, 702 |
| BseBI | CCWGG | 2 cut(s) | 60, 445 |
| BseDI | CCNNGG | 2 cut(s) | 188, 639 |
| BseGI | GGATG | 4 cut(s) | 357, 427, 453, 817 |
| BseNI | ACTGG | 3 cut(s) | 303, 599, 702 |
| BseRI | GAGGAG | 1 cut(s) | 700 |
| BseXI | GCAGC | 2 cut(s) | 162, 542 |
| Bsh1236I | CGCG | 1 cut(s) | 377 |
| BshFI | GGCC | 3 cut(s) | 43, 91, 531 |
| BsiHKCI | CYCGRG | 1 cut(s) | 38 |
| BslFI | GGGAC | 3 cut(s) | 85, 239, 708 |
| BsmAI | GTCTC | 1 cut(s) | 516 |
| BsmFI | GGGAC | 3 cut(s) | 85, 239, 708 |
| BsnI | GGCC | 3 cut(s) | 43, 91, 531 |
| BsoBI | CYCGRG | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 710 |
| Bsp143I | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| BspACI | CCGC | 3 cut(s) | 233, 427, 767 |
| BspANI | GGCC | 3 cut(s) | 43, 91, 531 |
| BspFNI | CGCG | 1 cut(s) | 377 |
| BspHI | TCATGA | 1 cut(s) | 151 |
| BspLI | GGNNCC | 1 cut(s) | 709 |
| BspMAI | CTGCAG | 1 cut(s) | 521 |
| BspQI | GCTCTTC | 2 cut(s) | 312, 579 |
| BsrI | ACTGG | 3 cut(s) | 303, 599, 702 |
| BssECI | CCNNGG | 2 cut(s) | 188, 639 |
| BssMI | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| BssNI | GRCGYC | 1 cut(s) | 31 |
| BssT1I | CCWWGG | 1 cut(s) | 639 |
| Bst2UI | CCWGG | 2 cut(s) | 60, 445 |
| Bst4CI | ACNGT | 5 cut(s) | 189, 527, 563, 670, 802 |
| Bst6I | CTCTTC | 3 cut(s) | 312, 387, 579 |
| BstACI | GRCGYC | 1 cut(s) | 31 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 661 |
| BstC8I | GCNNGC | 2 cut(s) | 427, 748 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 4 cut(s) | 357, 427, 453, 817 |
| BstFNI | CGCG | 1 cut(s) | 377 |
| BstH2I | RGCGCY | 2 cut(s) | 176, 778 |
| BstHHI | GCGC | 2 cut(s) | 175, 777 |
| BstKTI | GATC | 9 cut(s) | 96, 130, 151, 163, 276, 370, 486, 495, 757 |
| BstMAI | GTCTC | 1 cut(s) | 516 |
| BstMBI | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 661, 781 |
| BstNI | CCWGG | 2 cut(s) | 60, 445 |
| BstNSI | RCATGY | 1 cut(s) | 659 |
| BstSCI | CCNGG | 2 cut(s) | 58, 443 |
| BstSFI | CTRYAG | 2 cut(s) | 517, 723 |
| BstUI | CGCG | 1 cut(s) | 377 |
| BstV1I | GCAGC | 2 cut(s) | 162, 542 |
| BstX2I | RGATCY | 1 cut(s) | 273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 122 |
| BstYI | RGATCY | 1 cut(s) | 273 |
| BsuRI | GGCC | 3 cut(s) | 43, 91, 531 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtgZI | GCGATG | 1 cut(s) | 563 |
| BtsCI | GGATG | 4 cut(s) | 357, 427, 453, 817 |
| BtsIMutI | CAGTG | 1 cut(s) | 592 |
| Cac8I | GCNNGC | 2 cut(s) | 427, 748 |
| CaiI | CAGNNNCTG | 1 cut(s) | 525 |
| CciI | TCATGA | 1 cut(s) | 151 |
| CfoI | GCGC | 2 cut(s) | 175, 777 |
| Cfr13I | GGNCC | 2 cut(s) | 41, 185 |
| CseI | GACGC | 2 cut(s) | 20, 481 |
| Csp6I | GTAC | 3 cut(s) | 204, 441, 644 |
| CviAII | CATG | 7 cut(s) | 116, 152, 179, 479, 542, 656, 823 |
| CviQI | GTAC | 3 cut(s) | 204, 441, 644 |
| DpnI | GATC | 9 cut(s) | 95, 129, 150, 162, 275, 369, 485, 494, 756 |
| DpnII | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| EaeI | YGGCCR | 1 cut(s) | 89 |
| Eam1104I | CTCTTC | 3 cut(s) | 312, 387, 579 |
| EarI | CTCTTC | 3 cut(s) | 312, 387, 579 |
| Eco130I | CCWWGG | 1 cut(s) | 639 |
| Eco24I | GRGCYC | 1 cut(s) | 710 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 38 |
| EcoRII | CCWGG | 2 cut(s) | 58, 443 |
| EcoT14I | CCWWGG | 1 cut(s) | 639 |
| EcoT22I | ATGCAT | 1 cut(s) | 657 |
| EcoT38I | GRGCYC | 1 cut(s) | 710 |
| ErhI | CCWWGG | 1 cut(s) | 639 |
| FaeI | CATG | 7 cut(s) | 119, 155, 182, 482, 545, 659, 826 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 573, 605, 764, 796 |
| FaqI | GGGAC | 3 cut(s) | 85, 239, 708 |
| FatI | CATG | 7 cut(s) | 115, 151, 178, 478, 541, 655, 822 |
| FauI | CCCGC | 2 cut(s) | 434, 760 |
| FbaI | TGATCA | 2 cut(s) | 148, 367 |
| Fnu4HI | GCNGC | 2 cut(s) | 176, 556 |
| FokI | GGATG | 4 cut(s) | 344, 434, 460, 824 |
| FriOI | GRGCYC | 1 cut(s) | 710 |
| Fsp4HI | GCNGC | 2 cut(s) | 176, 556 |
| GlaI | GCGC | 2 cut(s) | 174, 776 |
| GluI | GCNGC | 2 cut(s) | 176, 556 |
| GsuI | CTGGAG | 1 cut(s) | 144 |
| HaeII | RGCGCY | 2 cut(s) | 176, 778 |
| HaeIII | GGCC | 3 cut(s) | 43, 91, 531 |
| HgaI | GACGC | 2 cut(s) | 20, 481 |
| HhaI | GCGC | 2 cut(s) | 175, 777 |
| Hin1I | GRCGYC | 1 cut(s) | 31 |
| Hin1II | CATG | 7 cut(s) | 119, 155, 182, 482, 545, 659, 826 |
| Hin6I | GCGC | 2 cut(s) | 173, 775 |
| HinP1I | GCGC | 2 cut(s) | 173, 775 |
| HinfI | GANTC | 1 cut(s) | 405 |
| HphI | GGTGA | 3 cut(s) | 233, 583, 682 |
| Hpy188I | TCNGA | 3 cut(s) | 333, 410, 625 |
| Hpy188III | TCNNGA | 2 cut(s) | 152, 693 |
| Hpy99I | CGWCG | 2 cut(s) | 475, 563 |
| HpyAV | CCTTC | 4 cut(s) | 90, 176, 382, 604 |
| HpyCH4III | ACNGT | 5 cut(s) | 189, 527, 563, 670, 802 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 178, 519, 655 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 661, 781 |
| Hsp92I | GRCGYC | 1 cut(s) | 31 |
| Hsp92II | CATG | 7 cut(s) | 119, 155, 182, 482, 545, 659, 826 |
| HspAI | GCGC | 2 cut(s) | 173, 775 |
| Ksp22I | TGATCA | 2 cut(s) | 148, 367 |
| Kzo9I | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| LguI | GCTCTTC | 2 cut(s) | 312, 579 |
| LmnI | GCTCC | 3 cut(s) | 635, 713, 799 |
| Lsp1109I | GCAGC | 2 cut(s) | 162, 542 |
| LweI | GCATC | 5 cut(s) | 109, 220, 412, 535, 689 |
| MaeIII | GTNAC | 3 cut(s) | 221, 294, 311 |
| MalI | GATC | 9 cut(s) | 95, 129, 150, 162, 275, 369, 485, 494, 756 |
| MboI | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| MboII | GAAGA | 5 cut(s) | 299, 404, 596, 685, 749 |
| MflI | RGATCY | 1 cut(s) | 273 |
| MhlI | GDGCHC | 1 cut(s) | 710 |
| MluCI | AATT | 1 cut(s) | 604 |
| MmeI | TCCRAC | 3 cut(s) | 399, 491, 603 |
| MnlI | CCTC | 4 cut(s) | 148, 241, 721, 788 |
| Mph1103I | ATGCAT | 1 cut(s) | 657 |
| MroXI | GAANNNNTTC | 1 cut(s) | 588 |
| MseI | TTAA | 3 cut(s) | 288, 507, 600 |
| MslI | CAYNNNNRTG | 2 cut(s) | 18, 827 |
| MspR9I | CCNGG | 2 cut(s) | 60, 445 |
| MvaI | CCWGG | 2 cut(s) | 60, 445 |
| MvnI | CGCG | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 661, 781 |
| NdeII | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| NlaIII | CATG | 7 cut(s) | 119, 155, 182, 482, 545, 659, 826 |
| NlaIV | GGNNCC | 1 cut(s) | 709 |
| NmuCI | GTSAC | 1 cut(s) | 221 |
| NsiI | ATGCAT | 1 cut(s) | 657 |
| NspI | RCATGY | 1 cut(s) | 659 |
| PagI | TCATGA | 1 cut(s) | 151 |
| PciSI | GCTCTTC | 2 cut(s) | 312, 579 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 89 |
| PdmI | GAANNNNTTC | 1 cut(s) | 588 |
| PfeI | GAWTC | 1 cut(s) | 405 |
| PkrI | GCNGC | 2 cut(s) | 177, 557 |
| Psp6I | CCWGG | 2 cut(s) | 58, 443 |
| PspGI | CCWGG | 2 cut(s) | 58, 443 |
| PspN4I | GGNNCC | 1 cut(s) | 709 |
| PspPI | GGNCC | 2 cut(s) | 41, 185 |
| PstI | CTGCAG | 1 cut(s) | 521 |
| PstNI | CAGNNNCTG | 1 cut(s) | 525 |
| PsuI | RGATCY | 1 cut(s) | 273 |
| RsaI | GTAC | 3 cut(s) | 205, 442, 645 |
| RsaNI | GTAC | 3 cut(s) | 204, 441, 644 |
| RseI | CAYNNNNRTG | 2 cut(s) | 18, 827 |
| SapI | GCTCTTC | 2 cut(s) | 312, 579 |
| SaqAI | TTAA | 3 cut(s) | 288, 507, 600 |
| SatI | GCNGC | 2 cut(s) | 176, 556 |
| Sau3AI | GATC | 9 cut(s) | 93, 127, 148, 160, 273, 367, 483, 492, 754 |
| Sau96I | GGNCC | 2 cut(s) | 41, 185 |
| ScrFI | CCNGG | 2 cut(s) | 60, 445 |
| SduI | GDGCHC | 1 cut(s) | 710 |
| SetI | ASST | 8 cut(s) | 296, 446, 557, 591, 645, 752, 796, 810 |
| SfaNI | GCATC | 5 cut(s) | 109, 220, 412, 535, 689 |
| SfcI | CTRYAG | 2 cut(s) | 517, 723 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 18, 827 |
| Sse9I | AATT | 1 cut(s) | 604 |
| SsiI | CCGC | 3 cut(s) | 233, 427, 767 |
| StyD4I | CCNGG | 2 cut(s) | 58, 443 |
| StyI | CCWWGG | 1 cut(s) | 639 |
| TaaI | ACNGT | 5 cut(s) | 189, 527, 563, 670, 802 |
| TaqI | TCGA | 2 cut(s) | 83, 163 |
| TasI | AATT | 1 cut(s) | 604 |
| TfiI | GAWTC | 1 cut(s) | 405 |
| Tru1I | TTAA | 3 cut(s) | 288, 507, 600 |
| Tru9I | TTAA | 3 cut(s) | 288, 507, 600 |
| TscAI | CASTG | 1 cut(s) | 599 |
| TseFI | GTSAC | 1 cut(s) | 221 |
| TseI | GCWGC | 2 cut(s) | 175, 555 |
| Tsp45I | GTSAC | 1 cut(s) | 221 |
| TspDTI | ATGAA | 1 cut(s) | 195 |
| TspRI | CASTG | 1 cut(s) | 599 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |
| XceI | RCATGY | 1 cut(s) | 659 |
| XmnI | GAANNNNTTC | 1 cut(s) | 588 |
| Zsp2I | ATGCAT | 1 cut(s) | 657 |