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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 295 |
| Acc36I | ACCTGC | 1 cut(s) | 295 |
| AciI | CCGC | 2 cut(s) | 14, 267 |
| AclWI | GGATC | 1 cut(s) | 191 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AfaI | GTAC | 1 cut(s) | 28 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AluBI | AGCT | 3 cut(s) | 110, 157, 169 |
| AluI | AGCT | 3 cut(s) | 110, 157, 169 |
| Alw26I | GTCTC | 4 cut(s) | 41, 58, 74, 388 |
| AlwI | GGATC | 1 cut(s) | 191 |
| Ama87I | CYCGRG | 1 cut(s) | 55 |
| AoxI | GGCC | 1 cut(s) | 338 |
| ApeKI | GCWGC | 1 cut(s) | 369 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| AspS9I | GGNCC | 1 cut(s) | 172 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| AvaI | CYCGRG | 1 cut(s) | 55 |
| AvaII | GGWCC | 1 cut(s) | 172 |
| BbvI | GCAGC | 1 cut(s) | 356 |
| BccI | CCATC | 2 cut(s) | 139, 157 |
| BcoDI | GTCTC | 4 cut(s) | 41, 58, 74, 388 |
| BfaI | CTAG | 2 cut(s) | 120, 336 |
| BfuAI | ACCTGC | 1 cut(s) | 295 |
| BisI | GCNGC | 1 cut(s) | 370 |
| BlsI | GCNGC | 1 cut(s) | 371 |
| Bme18I | GGWCC | 1 cut(s) | 172 |
| BmeT110I | CYCGRG | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 1 cut(s) | 172 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 38, 70 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 1 cut(s) | 151 |
| BsaWI | WCCGGW | 1 cut(s) | 386 |
| Bse1I | ACTGG | 2 cut(s) | 251, 265 |
| BseGI | GGATG | 2 cut(s) | 168, 226 |
| BseMII | CTCAG | 1 cut(s) | 227 |
| BseNI | ACTGG | 2 cut(s) | 251, 265 |
| BseXI | GCAGC | 1 cut(s) | 356 |
| BseYI | CCCAGC | 1 cut(s) | 157 |
| BsgI | GTGCAG | 1 cut(s) | 355 |
| BshFI | GGCC | 1 cut(s) | 340 |
| BsiHKCI | CYCGRG | 1 cut(s) | 55 |
| BsiSI | CCGG | 1 cut(s) | 387 |
| BsmAI | GTCTC | 4 cut(s) | 41, 58, 74, 388 |
| BsnI | GGCC | 1 cut(s) | 340 |
| BsoBI | CYCGRG | 1 cut(s) | 55 |
| Bsp143I | GATC | 2 cut(s) | 31, 196 |
| BspACI | CCGC | 2 cut(s) | 14, 267 |
| BspANI | GGCC | 1 cut(s) | 340 |
| BspCNI | CTCAG | 1 cut(s) | 226 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspMI | ACCTGC | 1 cut(s) | 295 |
| BspPI | GGATC | 1 cut(s) | 191 |
| BsrI | ACTGG | 2 cut(s) | 251, 265 |
| BssMI | GATC | 2 cut(s) | 31, 196 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 183 |
| Bst6I | CTCTTC | 1 cut(s) | 355 |
| BstDEI | CTNAG | 1 cut(s) | 213 |
| BstF5I | GGATG | 2 cut(s) | 168, 226 |
| BstKTI | GATC | 2 cut(s) | 34, 199 |
| BstMAI | GTCTC | 4 cut(s) | 41, 58, 74, 388 |
| BstMBI | GATC | 2 cut(s) | 31, 196 |
| BstV1I | GCAGC | 1 cut(s) | 356 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 340 |
| BtsCI | GGATG | 2 cut(s) | 168, 226 |
| BveI | ACCTGC | 1 cut(s) | 295 |
| CciI | TCATGA | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 1 cut(s) | 172 |
| Csp6I | GTAC | 1 cut(s) | 27 |
| CviAII | CATG | 2 cut(s) | 194, 301 |
| CviJI | RGCY | 8 cut(s) | 110, 157, 169, 190, 242, 335, 340, 369 |
| CviKI_1 | RGCY | 8 cut(s) | 110, 157, 169, 190, 242, 335, 340, 369 |
| CviQI | GTAC | 1 cut(s) | 27 |
| DdeI | CTNAG | 1 cut(s) | 213 |
| DpnI | GATC | 2 cut(s) | 33, 198 |
| DpnII | GATC | 2 cut(s) | 31, 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 355 |
| EarI | CTCTTC | 1 cut(s) | 355 |
| Eco47I | GGWCC | 1 cut(s) | 172 |
| Eco88I | CYCGRG | 1 cut(s) | 55 |
| FaeI | CATG | 2 cut(s) | 197, 304 |
| FaiI | YATR | 2 cut(s) | 195, 302 |
| FatI | CATG | 2 cut(s) | 193, 300 |
| FauI | CCCGC | 2 cut(s) | 7, 260 |
| Fnu4HI | GCNGC | 1 cut(s) | 370 |
| FokI | GGATG | 2 cut(s) | 175, 233 |
| Fsp4HI | GCNGC | 1 cut(s) | 370 |
| FspBI | CTAG | 2 cut(s) | 120, 336 |
| GluI | GCNGC | 1 cut(s) | 370 |
| GsaI | CCCAGC | 1 cut(s) | 161 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 340 |
| HapII | CCGG | 1 cut(s) | 387 |
| Hin1II | CATG | 2 cut(s) | 197, 304 |
| HinfI | GANTC | 2 cut(s) | 247, 381 |
| HpaII | CCGG | 1 cut(s) | 387 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 1 cut(s) | 64 |
| Hpy188III | TCNNGA | 2 cut(s) | 130, 194 |
| HpyAV | CCTTC | 1 cut(s) | 402 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 183 |
| HpyCH4V | TGCA | 3 cut(s) | 304, 372, 393 |
| HpyF3I | CTNAG | 1 cut(s) | 213 |
| Hsp92II | CATG | 2 cut(s) | 197, 304 |
| Kzo9I | GATC | 2 cut(s) | 31, 196 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| Lsp1109I | GCAGC | 1 cut(s) | 356 |
| MaeI | CTAG | 2 cut(s) | 120, 336 |
| MalI | GATC | 2 cut(s) | 33, 198 |
| MboI | GATC | 2 cut(s) | 31, 196 |
| MboII | GAAGA | 2 cut(s) | 288, 372 |
| MluCI | AATT | 1 cut(s) | 290 |
| MlyI | GAGTC | 2 cut(s) | 256, 390 |
| MmeI | TCCRAC | 1 cut(s) | 42 |
| MnlI | CCTC | 9 cut(s) | 4, 17, 58, 90, 201, 315, 350, 356, 389 |
| MslI | CAYNNNNRTG | 1 cut(s) | 305 |
| MspA1I | CMGCKG | 1 cut(s) | 157 |
| MspI | CCGG | 1 cut(s) | 387 |
| NdeII | GATC | 2 cut(s) | 31, 196 |
| NlaIII | CATG | 2 cut(s) | 197, 304 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PaqCI | CACCTGC | 1 cut(s) | 295 |
| PkrI | GCNGC | 1 cut(s) | 371 |
| PleI | GAGTC | 2 cut(s) | 255, 389 |
| PpsI | GAGTC | 2 cut(s) | 255, 389 |
| PspFI | CCCAGC | 1 cut(s) | 157 |
| PspPI | GGNCC | 1 cut(s) | 172 |
| PvuII | CAGCTG | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 28 |
| RsaNI | GTAC | 1 cut(s) | 27 |
| RseI | CAYNNNNRTG | 1 cut(s) | 305 |
| SatI | GCNGC | 1 cut(s) | 370 |
| Sau3AI | GATC | 2 cut(s) | 31, 196 |
| Sau96I | GGNCC | 1 cut(s) | 172 |
| SchI | GAGTC | 2 cut(s) | 256, 390 |
| SetI | ASST | 8 cut(s) | 9, 28, 112, 159, 171, 309, 367, 413 |
| SinI | GGWCC | 1 cut(s) | 172 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 305 |
| SmlI | CTYRAG | 1 cut(s) | 130 |
| SmoI | CTYRAG | 1 cut(s) | 130 |
| Sse9I | AATT | 1 cut(s) | 290 |
| SsiI | CCGC | 2 cut(s) | 14, 267 |
| SspI | AATATT | 1 cut(s) | 280 |
| SspMI | CTAG | 2 cut(s) | 120, 336 |
| TaaI | ACNGT | 2 cut(s) | 52, 183 |
| TaqI | TCGA | 1 cut(s) | 230 |
| TasI | AATT | 1 cut(s) | 290 |
| TseI | GCWGC | 1 cut(s) | 369 |
| VpaK11BI | GGWCC | 1 cut(s) | 172 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XspI | CTAG | 2 cut(s) | 120, 336 |