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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 337, 541 |
| AciI | CCGC | 4 cut(s) | 155, 176, 569, 582 |
| AcyI | GRCGYC | 1 cut(s) | 116 |
| AfaI | GTAC | 1 cut(s) | 82 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 30 |
| AflIII | ACRYGT | 1 cut(s) | 280 |
| AgsI | TTSAA | 5 cut(s) | 47, 503, 519, 558, 590 |
| AjiI | CACGTC | 1 cut(s) | 281 |
| AjnI | CCWGG | 1 cut(s) | 304 |
| AluBI | AGCT | 7 cut(s) | 126, 273, 316, 461, 482, 579, 601 |
| AluI | AGCT | 7 cut(s) | 126, 273, 316, 461, 482, 579, 601 |
| Alw21I | GWGCWC | 1 cut(s) | 581 |
| AoxI | GGCC | 3 cut(s) | 32, 52, 595 |
| ApaI | GGGCCC | 1 cut(s) | 36 |
| ApeKI | GCWGC | 3 cut(s) | 160, 215, 226 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 125 |
| AspLEI | GCGC | 1 cut(s) | 160 |
| AspS9I | GGNCC | 4 cut(s) | 32, 33, 53, 248 |
| AsuC2I | CCSGG | 1 cut(s) | 246 |
| AsuHPI | GGTGA | 6 cut(s) | 13, 250, 433, 451, 520, 557 |
| AvaII | GGWCC | 1 cut(s) | 248 |
| AxyI | CCTNAGG | 1 cut(s) | 540 |
| BaeGI | GKGCMC | 1 cut(s) | 36 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 72, 105 |
| BanII | GRGCYC | 2 cut(s) | 36, 581 |
| Bbv12I | GWGCWC | 1 cut(s) | 581 |
| BbvCI | CCTCAGC | 1 cut(s) | 147 |
| BbvI | GCAGC | 3 cut(s) | 172, 202, 213 |
| BciT130I | CCWGG | 1 cut(s) | 306 |
| BcnI | CCSGG | 1 cut(s) | 246 |
| BfaI | CTAG | 5 cut(s) | 39, 296, 320, 458, 605 |
| BfmI | CTRYAG | 1 cut(s) | 483 |
| BfuAI | ACCTGC | 2 cut(s) | 337, 541 |
| BglII | AGATCT | 1 cut(s) | 355 |
| BisI | GCNGC | 4 cut(s) | 156, 161, 216, 227 |
| BlsI | GCNGC | 4 cut(s) | 157, 162, 217, 228 |
| Bme1390I | CCNGG | 2 cut(s) | 246, 306 |
| Bme18I | GGWCC | 1 cut(s) | 248 |
| BmgBI | CACGTC | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 4 cut(s) | 32, 33, 53, 248 |
| BmiI | GGNNCC | 5 cut(s) | 34, 55, 249, 261, 537 |
| BmrFI | CCNGG | 2 cut(s) | 246, 306 |
| BmsI | GCATC | 1 cut(s) | 202 |
| Bpu10I | CCTNAGC | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 230 |
| BpuMI | CCSGG | 1 cut(s) | 246 |
| BsaHI | GRCGYC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 1 cut(s) | 103 |
| BsaWI | WCCGGW | 1 cut(s) | 436 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 30 |
| Bse21I | CCTNAGG | 1 cut(s) | 540 |
| BseBI | CCWGG | 1 cut(s) | 306 |
| BseDI | CCNNGG | 1 cut(s) | 103 |
| BseGI | GGATG | 2 cut(s) | 388, 619 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 30 |
| BseMII | CTCAG | 2 cut(s) | 75, 138 |
| BseSI | GKGCMC | 1 cut(s) | 36 |
| BseXI | GCAGC | 3 cut(s) | 172, 202, 213 |
| BseYI | CCCAGC | 1 cut(s) | 344 |
| BshFI | GGCC | 3 cut(s) | 34, 54, 597 |
| BsiHKAI | GWGCWC | 1 cut(s) | 581 |
| BsiSI | CCGG | 2 cut(s) | 245, 437 |
| BslFI | GGGAC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 30 |
| BsmFI | GGGAC | 1 cut(s) | 261 |
| BsnI | GGCC | 3 cut(s) | 34, 54, 597 |
| Bsp120I | GGGCCC | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 2 cut(s) | 36, 581 |
| Bsp143I | GATC | 2 cut(s) | 355, 385 |
| BspACI | CCGC | 4 cut(s) | 155, 176, 569, 582 |
| BspANI | GGCC | 3 cut(s) | 34, 54, 597 |
| BspCNI | CTCAG | 2 cut(s) | 76, 139 |
| BspLI | GGNNCC | 5 cut(s) | 34, 55, 249, 261, 537 |
| BspMI | ACCTGC | 2 cut(s) | 337, 541 |
| BspQI | GCTCTTC | 1 cut(s) | 116 |
| BssECI | CCNNGG | 1 cut(s) | 103 |
| BssMI | GATC | 2 cut(s) | 355, 385 |
| BssNI | GRCGYC | 1 cut(s) | 116 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 631 |
| Bst6I | CTCTTC | 2 cut(s) | 116, 498 |
| BstACI | GRCGYC | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 3 cut(s) | 114, 275, 599 |
| BstDEI | CTNAG | 3 cut(s) | 84, 147, 540 |
| BstF5I | GGATG | 2 cut(s) | 388, 619 |
| BstHHI | GCGC | 1 cut(s) | 160 |
| BstKTI | GATC | 2 cut(s) | 358, 388 |
| BstMBI | GATC | 2 cut(s) | 355, 385 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 329 |
| BstNI | CCWGG | 1 cut(s) | 306 |
| BstSCI | CCNGG | 2 cut(s) | 244, 304 |
| BstSFI | CTRYAG | 1 cut(s) | 483 |
| BstSLI | GKGCMC | 1 cut(s) | 36 |
| BstV1I | GCAGC | 3 cut(s) | 172, 202, 213 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| Bsu36I | CCTNAGG | 1 cut(s) | 540 |
| BsuRI | GGCC | 3 cut(s) | 34, 54, 597 |
| BtrI | CACGTC | 1 cut(s) | 281 |
| BtsCI | GGATG | 2 cut(s) | 388, 619 |
| BtsIMutI | CAGTG | 1 cut(s) | 172 |
| BveI | ACCTGC | 2 cut(s) | 337, 541 |
| Cac8I | GCNNGC | 3 cut(s) | 114, 275, 599 |
| CfoI | GCGC | 1 cut(s) | 160 |
| Cfr13I | GGNCC | 4 cut(s) | 32, 33, 53, 248 |
| CseI | GACGC | 2 cut(s) | 35, 105 |
| CsiI | ACCWGGT | 1 cut(s) | 304 |
| Csp6I | GTAC | 1 cut(s) | 81 |
| CviAII | CATG | 1 cut(s) | 660 |
| CviQI | GTAC | 1 cut(s) | 81 |
| DdeI | CTNAG | 3 cut(s) | 84, 147, 540 |
| DpnI | GATC | 2 cut(s) | 357, 387 |
| DpnII | GATC | 2 cut(s) | 355, 385 |
| Eam1104I | CTCTTC | 2 cut(s) | 116, 498 |
| EarI | CTCTTC | 2 cut(s) | 116, 498 |
| Ecl136II | GAGCTC | 1 cut(s) | 579 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 2 cut(s) | 36, 581 |
| Eco47I | GGWCC | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 579 |
| Eco81I | CCTNAGG | 1 cut(s) | 540 |
| EcoICRI | GAGCTC | 1 cut(s) | 579 |
| EcoO109I | RGGNCCY | 2 cut(s) | 32, 33 |
| EcoRII | CCWGG | 1 cut(s) | 304 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| EcoT38I | GRGCYC | 2 cut(s) | 36, 581 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaeI | CATG | 1 cut(s) | 663 |
| FaiI | YATR | 3 cut(s) | 224, 341, 661 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 585, 617 |
| FaqI | GGGAC | 1 cut(s) | 261 |
| FatI | CATG | 1 cut(s) | 659 |
| Fnu4HI | GCNGC | 4 cut(s) | 156, 161, 216, 227 |
| FokI | GGATG | 2 cut(s) | 395, 626 |
| FriOI | GRGCYC | 2 cut(s) | 36, 581 |
| Fsp4HI | GCNGC | 4 cut(s) | 156, 161, 216, 227 |
| FspBI | CTAG | 5 cut(s) | 39, 296, 320, 458, 605 |
| GlaI | GCGC | 1 cut(s) | 159 |
| GluI | GCNGC | 4 cut(s) | 156, 161, 216, 227 |
| GsaI | CCCAGC | 1 cut(s) | 348 |
| HaeIII | GGCC | 3 cut(s) | 34, 54, 597 |
| HapII | CCGG | 2 cut(s) | 245, 437 |
| HgaI | GACGC | 2 cut(s) | 35, 105 |
| HhaI | GCGC | 1 cut(s) | 160 |
| Hin1I | GRCGYC | 1 cut(s) | 116 |
| Hin1II | CATG | 1 cut(s) | 663 |
| Hin6I | GCGC | 1 cut(s) | 158 |
| HinP1I | GCGC | 1 cut(s) | 158 |
| HincII | GTYRAC | 1 cut(s) | 286 |
| HindII | GTYRAC | 1 cut(s) | 286 |
| HinfI | GANTC | 1 cut(s) | 428 |
| HpaII | CCGG | 2 cut(s) | 245, 437 |
| HphI | GGTGA | 6 cut(s) | 13, 250, 433, 451, 520, 557 |
| Hpy166II | GTNNAC | 1 cut(s) | 286 |
| Hpy188III | TCNNGA | 1 cut(s) | 204 |
| Hpy8I | GTNNAC | 1 cut(s) | 286 |
| Hpy99I | CGWCG | 3 cut(s) | 29, 121, 282 |
| HpyAV | CCTTC | 2 cut(s) | 409, 587 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 631 |
| HpyCH4IV | ACGT | 2 cut(s) | 268, 280 |
| HpyCH4V | TGCA | 4 cut(s) | 71, 229, 527, 659 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 329 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 147, 540 |
| HpySE526I | ACGT | 2 cut(s) | 268, 280 |
| Hsp92I | GRCGYC | 1 cut(s) | 116 |
| Hsp92II | CATG | 1 cut(s) | 663 |
| HspAI | GCGC | 1 cut(s) | 158 |
| Kzo9I | GATC | 2 cut(s) | 355, 385 |
| LguI | GCTCTTC | 1 cut(s) | 116 |
| LmnI | GCTCC | 2 cut(s) | 535, 584 |
| Lsp1109I | GCAGC | 3 cut(s) | 172, 202, 213 |
| LweI | GCATC | 1 cut(s) | 202 |
| MabI | ACCWGGT | 1 cut(s) | 304 |
| MaeI | CTAG | 5 cut(s) | 39, 296, 320, 458, 605 |
| MaeII | ACGT | 2 cut(s) | 268, 280 |
| MalI | GATC | 2 cut(s) | 357, 387 |
| MboI | GATC | 2 cut(s) | 355, 385 |
| MboII | GAAGA | 7 cut(s) | 10, 133, 423, 424, 515, 602, 645 |
| MfeI | CAATTG | 3 cut(s) | 252, 498, 519 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MhlI | GDGCHC | 2 cut(s) | 36, 581 |
| MluCI | AATT | 6 cut(s) | 199, 233, 252, 498, 519, 528 |
| MmeI | TCCRAC | 1 cut(s) | 331 |
| MnlI | CCTC | 8 cut(s) | 46, 79, 142, 205, 384, 412, 499, 634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 125 |
| MseI | TTAA | 1 cut(s) | 531 |
| MspA1I | CMGCKG | 1 cut(s) | 584 |
| MspI | CCGG | 2 cut(s) | 245, 437 |
| MspR9I | CCNGG | 2 cut(s) | 246, 306 |
| MunI | CAATTG | 3 cut(s) | 252, 498, 519 |
| MvaI | CCWGG | 1 cut(s) | 306 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 329 |
| NciI | CCSGG | 1 cut(s) | 246 |
| NdeII | GATC | 2 cut(s) | 355, 385 |
| NlaIII | CATG | 1 cut(s) | 663 |
| NlaIV | GGNNCC | 5 cut(s) | 34, 55, 249, 261, 537 |
| PciSI | GCTCTTC | 1 cut(s) | 116 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 125 |
| PfeI | GAWTC | 1 cut(s) | 428 |
| PkrI | GCNGC | 4 cut(s) | 157, 162, 217, 228 |
| Psp124BI | GAGCTC | 1 cut(s) | 581 |
| Psp6I | CCWGG | 1 cut(s) | 304 |
| PspFI | CCCAGC | 1 cut(s) | 344 |
| PspGI | CCWGG | 1 cut(s) | 304 |
| PspN4I | GGNNCC | 5 cut(s) | 34, 55, 249, 261, 537 |
| PspOMI | GGGCCC | 1 cut(s) | 32 |
| PspPI | GGNCC | 4 cut(s) | 32, 33, 53, 248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 477, 509 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| RsaI | GTAC | 1 cut(s) | 82 |
| RsaNI | GTAC | 1 cut(s) | 81 |
| SacI | GAGCTC | 1 cut(s) | 581 |
| SapI | GCTCTTC | 1 cut(s) | 116 |
| SaqAI | TTAA | 1 cut(s) | 531 |
| SatI | GCNGC | 4 cut(s) | 156, 161, 216, 227 |
| Sau3AI | GATC | 2 cut(s) | 355, 385 |
| Sau96I | GGNCC | 4 cut(s) | 32, 33, 53, 248 |
| ScrFI | CCNGG | 2 cut(s) | 246, 306 |
| SduI | GDGCHC | 2 cut(s) | 36, 581 |
| SexAI | ACCWGGT | 1 cut(s) | 304 |
| SfaNI | GCATC | 1 cut(s) | 202 |
| SfcI | CTRYAG | 1 cut(s) | 483 |
| SinI | GGWCC | 1 cut(s) | 248 |
| SmlI | CTYRAG | 1 cut(s) | 209 |
| SmoI | CTYRAG | 1 cut(s) | 209 |
| Sse9I | AATT | 6 cut(s) | 199, 233, 252, 498, 519, 528 |
| SsiI | CCGC | 4 cut(s) | 155, 176, 569, 582 |
| SspMI | CTAG | 5 cut(s) | 39, 296, 320, 458, 605 |
| SstI | GAGCTC | 1 cut(s) | 581 |
| StyD4I | CCNGG | 2 cut(s) | 244, 304 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 2 cut(s) | 167, 631 |
| TaiI | ACGT | 2 cut(s) | 271, 283 |
| TaqI | TCGA | 1 cut(s) | 119 |
| TasI | AATT | 6 cut(s) | 199, 233, 252, 498, 519, 528 |
| TauI | GCSGC | 1 cut(s) | 158 |
| TfiI | GAWTC | 1 cut(s) | 428 |
| Tru1I | TTAA | 1 cut(s) | 531 |
| Tru9I | TTAA | 1 cut(s) | 531 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseI | GCWGC | 3 cut(s) | 160, 215, 226 |
| TspRI | CASTG | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 1 cut(s) | 248 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 605 |
| XmnI | GAANNNNTTC | 1 cut(s) | 125 |
| XspI | CTAG | 5 cut(s) | 39, 296, 320, 458, 605 |