Rmu_sc0008360.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008360.1
OG0000049
Physical Location & Seq
Forward (+)
40306 .. 41724
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008360.1_g000006.1.cds

Sequence Viewer

Length: 1347 bp
atggcagaagcgatcgatcgtctcgctactgcaatgacacaatctaattggacggtggtctcgctgggggctgcggctgttcaagaggggcattttctggttggccggttgttggcgccgaaggcaaagctaccaggatttaaaggaaccattgctactatctggcacatcagatctggcctcaatatacaagacgcaggtgagcgttttgtgttccagtttgagagtgctgctgtgcataacaggattatgcatggggggccgtggttttatcgtaacaccatgcttgtgttgggaaagtatgatggtctgggtcctgtggaatctgtgccgctgcatctgatggaagcctgggttgctgtgaaaggattgccgattgcgctgaggaataaagtggcattgtccatggtgggttcggctctagggcaagtcgtgcggcttgatctgactgcattgaagcgtaaggaagaggagcagcgcgtcaagatcgttttcgatgtacgtaggcgaattcgcacctggatgatttttgaattctcatatgttgtgaaactggaattggtgcttatctatgaaaaggtgaaaggcttttgtcatgcttgcggtttgttccttcatgacgcgttagggtgtgacaaaaaattggtccaggagaaggaggagattaaagttgcgcctccagcagctgccatggccggtctgtctctgaggtcggaggcacaagctgttttgtatccttctggtgttcctactagggaggtgaggatgggcagggcgataaaacatggaggcacggggttggccgtgcttgggcaggagtcggactctcagagtgggggtggtattcttgcagagaagggcagccttaagcaggcgggaagttcattccattatggatctggtccaactttccttgacaaggttggatcagtctctctgactaggttaactgatttggtagagattgggaagtcaaattctagggtggagtttttggcaattcaaacagctccagttgggaaaaaacgaaaagctgtgcatgctttggaaaggtttgggaaaaagtatttagcctttcctgactcaaagcttcaggtggaggagaacgtccctttggtgttacagcataagattggcaagctgatggaagggaagaagcttcgaaagtataagcgaaagggaaaattgaactctgattcagaggaggctgttattgctggtaagggattgcatgtgcaacctgtggagggtgaggtcgtgccaatggtgaagtctgctatgatagagagtgcagtggagggttatgtggaaggtgttttatcgccttctacagatagtttaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

448

Amino Acids

48.83

Weight (kDa)

9.57

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 115
AccII CGCG 2 cut(s) 480, 623
AciI CCGC 5 cut(s) 74, 332, 436, 603, 875
AclWI GGATC 2 cut(s) 904, 934
AcoI YGGCCR 3 cut(s) 103, 693, 801
AcsI RAATTY 3 cut(s) 510, 533, 976
AcuI CTGAAG 1 cut(s) 1076
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 6 cut(s) 112, 655, 810, 871, 919, 1247
AflII CTTAAG 1 cut(s) 866
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 5 cut(s) 83, 457, 533, 1004, 1189
AjnI CCWGG 4 cut(s) 133, 350, 518, 648
AjuI GAANNNNNNNTTGG 4 cut(s) 542, 574, 1097, 1129
AluBI AGCT 8 cut(s) 130, 686, 725, 1010, 1034, 1090, 1141, 1159
AluI AGCT 8 cut(s) 130, 686, 725, 1010, 1034, 1090, 1141, 1159
Alw26I GTCTC 4 cut(s) 26, 64, 708, 937
AlwI GGATC 2 cut(s) 904, 934
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 5 cut(s) 103, 178, 260, 693, 801
ApeKI GCWGC 7 cut(s) 71, 230, 334, 475, 683, 686, 861
ApoI RAATTY 3 cut(s) 510, 533, 976
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AspLEI GCGC 4 cut(s) 118, 382, 480, 676
AspS9I GGNCC 4 cut(s) 260, 314, 646, 902
AsuHPI GGTGA 5 cut(s) 212, 592, 772, 1262, 1279
AsuII TTCGAA 1 cut(s) 1162
AvaII GGWCC 3 cut(s) 314, 646, 902
BanI GGYRCC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 7 cut(s) 58, 217, 321, 487, 673, 695, 873
BccI CCATC 4 cut(s) 299, 337, 760, 1138
BceAI ACGGC 2 cut(s) 247, 788
BciT130I CCWGG 4 cut(s) 135, 352, 520, 650
BciVI GTATCC 1 cut(s) 744
BcoDI GTCTC 4 cut(s) 26, 64, 708, 937
BfaI CTAG 4 cut(s) 422, 753, 942, 981
BfmI CTRYAG 1 cut(s) 1329
BfoI RGCGCY 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 866
BfuAI ACCTGC 1 cut(s) 188
BfuI GTATCC 1 cut(s) 744
BglII AGATCT 1 cut(s) 173
Bme1390I CCNGG 4 cut(s) 135, 352, 520, 650
Bme18I GGWCC 3 cut(s) 314, 646, 902
BmgT120I GGNCC 4 cut(s) 260, 314, 646, 902
BmiI GGNNCC 4 cut(s) 117, 148, 261, 315
BmrFI CCNGG 4 cut(s) 135, 352, 520, 650
BmsI GCATC 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 2 cut(s) 663, 996
Bpu10I CCTNAGC 1 cut(s) 383
Bpu14I TTCGAA 1 cut(s) 1162
Bsa29I ATCGAT 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 263, 351, 405, 690
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 655, 810, 871, 919, 1247
Bse118I RCCGGY 2 cut(s) 105, 695
Bse1I ACTGG 3 cut(s) 217, 558, 1013
Bse3DI GCAATG 2 cut(s) 39, 150
BseBI CCWGG 4 cut(s) 135, 352, 520, 650
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 4 cut(s) 263, 351, 405, 690
BseGI GGATG 2 cut(s) 528, 771
BseLI CCNNNNNNNGG 6 cut(s) 112, 655, 810, 871, 919, 1247
BseMI GCAATG 2 cut(s) 39, 150
BseMII CTCAG 3 cut(s) 374, 698, 842
BseNI ACTGG 3 cut(s) 217, 558, 1013
BseRI GAGGAG 4 cut(s) 485, 674, 1115, 1217
BseXI GCAGC 7 cut(s) 58, 217, 321, 487, 673, 695, 873
BseYI CCCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 1311
Bsh1236I CGCG 2 cut(s) 480, 623
Bsh1285I CGRYCG 2 cut(s) 15, 19
BshFI GGCC 5 cut(s) 105, 180, 262, 695, 803
BshNI GGYRCC 1 cut(s) 115
BshVI ATCGAT 1 cut(s) 15
BsiEI CGRYCG 2 cut(s) 15, 19
BsiSI CCGG 2 cut(s) 106, 696
BslFI GGGAC 1 cut(s) 1094
BslI CCNNNNNNNGG 6 cut(s) 112, 655, 810, 871, 919, 1247
BsmAI GTCTC 4 cut(s) 26, 64, 708, 937
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 1094
BsnI GGCC 5 cut(s) 105, 180, 262, 695, 803
Bso31I GGTCTC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 1162
Bsp143I GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
Bsp19I CCATGG 2 cut(s) 405, 690
BspACI CCGC 5 cut(s) 74, 332, 436, 603, 875
BspANI GGCC 5 cut(s) 105, 180, 262, 695, 803
BspCNI CTCAG 3 cut(s) 375, 699, 841
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 2 cut(s) 480, 623
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 4 cut(s) 117, 148, 261, 315
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 2 cut(s) 904, 934
BspT104I TTCGAA 1 cut(s) 1162
BspT107I GGYRCC 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 39, 150
BsrFI RCCGGY 2 cut(s) 105, 695
BsrI ACTGG 3 cut(s) 217, 558, 1013
BssAI RCCGGY 2 cut(s) 105, 695
BssECI CCNNGG 4 cut(s) 263, 351, 405, 690
BssMI GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 405, 690
Bst2UI CCWGG 4 cut(s) 135, 352, 520, 650
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 866
BstAPI GCANNNNNTGC 1 cut(s) 433
BstBAI YACGTR 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 1162
BstC8I GCNNGC 4 cut(s) 601, 873, 1041, 1139
BstDEI CTNAG 3 cut(s) 383, 707, 828
BstDSI CCRYGG 3 cut(s) 263, 405, 690
BstENI CCTNNNNNAGG 2 cut(s) 869, 917
BstF5I GGATG 2 cut(s) 528, 771
BstFNI CGCG 2 cut(s) 480, 623
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 4 cut(s) 118, 382, 480, 676
BstKTI GATC 7 cut(s) 15, 19, 176, 445, 489, 899, 929
BstMAI GTCTC 4 cut(s) 26, 64, 708, 937
BstMBI GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
BstMCI CGRYCG 2 cut(s) 15, 19
BstMWI GCNNNNNNNGC 9 cut(s) 122, 259, 356, 379, 433, 680, 692, 1040, 1214
BstNI CCWGG 4 cut(s) 135, 352, 520, 650
BstNSI RCATGY 2 cut(s) 1043, 1235
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 4 cut(s) 133, 350, 518, 648
BstSFI CTRYAG 1 cut(s) 1329
BstSNI TACGTA 1 cut(s) 503
BstUI CGCG 2 cut(s) 480, 623
BstV1I GCAGC 7 cut(s) 58, 217, 321, 487, 673, 695, 873
BstX2I RGATCY 2 cut(s) 173, 896
BstYI RGATCY 2 cut(s) 173, 896
Bsu15I ATCGAT 1 cut(s) 15
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 5 cut(s) 105, 180, 262, 695, 803
BsuTUI ATCGAT 1 cut(s) 15
BtgI CCRYGG 3 cut(s) 263, 405, 690
BtsCI GGATG 2 cut(s) 528, 771
BtsI GCAGTG 1 cut(s) 1299
BtsIMutI CAGTG 1 cut(s) 1299
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 4 cut(s) 601, 873, 1041, 1139
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 616
CfoI GCGC 4 cut(s) 118, 382, 480, 676
Cfr10I RCCGGY 2 cut(s) 105, 695
Cfr13I GGNCC 4 cut(s) 260, 314, 646, 902
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 3 cut(s) 203, 469, 629
Csp6I GTAC 1 cut(s) 500
CviAII CATG 9 cut(s) 254, 283, 406, 596, 617, 691, 785, 1040, 1232
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 3 cut(s) 383, 707, 828
DinI GGCGCC 1 cut(s) 117
DpnI GATC 7 cut(s) 14, 18, 175, 444, 488, 898, 928
DpnII GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
DraI TTTAAA 1 cut(s) 142
EaeI YGGCCR 3 cut(s) 103, 693, 801
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco105I TACGTA 1 cut(s) 503
Eco130I CCWWGG 2 cut(s) 405, 690
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 314, 646, 902
Eco57I CTGAAG 1 cut(s) 1076
EcoNI CCTNNNNNAGG 2 cut(s) 869, 917
EcoO109I RGGNCCY 1 cut(s) 314
EcoRI GAATTC 2 cut(s) 510, 533
EcoRII CCWGG 4 cut(s) 133, 350, 518, 648
EcoT14I CCWWGG 2 cut(s) 405, 690
EcoT22I ATGCAT 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 405, 690
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 9 cut(s) 257, 286, 409, 599, 620, 694, 788, 1043, 1235
FaqI GGGAC 1 cut(s) 1094
FatI CATG 9 cut(s) 253, 282, 405, 595, 616, 690, 784, 1039, 1231
FauI CCCGC 1 cut(s) 868
FauNDI CATATG 1 cut(s) 541
FokI GGATG 2 cut(s) 535, 778
FspBI CTAG 4 cut(s) 422, 753, 942, 981
GlaI GCGC 4 cut(s) 117, 381, 479, 675
GsaI CCCAGC 1 cut(s) 68
GsuI CTGGAG 2 cut(s) 663, 996
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 5 cut(s) 105, 180, 262, 695, 803
HapII CCGG 2 cut(s) 106, 696
HgaI GACGC 3 cut(s) 203, 469, 629
HhaI GCGC 4 cut(s) 118, 382, 480, 676
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 9 cut(s) 257, 286, 409, 599, 620, 694, 788, 1043, 1235
Hin6I GCGC 4 cut(s) 116, 380, 478, 674
HinP1I GCGC 4 cut(s) 116, 380, 478, 674
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HindIII AAGCTT 2 cut(s) 1088, 1157
HinfI GANTC 5 cut(s) 323, 818, 824, 1082, 1196
HpaI GTTAAC 1 cut(s) 948
HpaII CCGG 2 cut(s) 106, 696
HphI GGTGA 5 cut(s) 212, 592, 772, 1262, 1279
Hpy166II GTNNAC 1 cut(s) 948
Hpy188III TCNNGA 4 cut(s) 83, 484, 617, 1079
Hpy8I GTNNAC 1 cut(s) 948
HpyAV CCTTC 8 cut(s) 115, 623, 649, 747, 850, 1142, 1304, 1335
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 502, 1107
HpyF10VI GCNNNNNNNGC 9 cut(s) 122, 259, 356, 379, 433, 680, 692, 1040, 1214
HpyF3I CTNAG 3 cut(s) 383, 707, 828
HpySE526I ACGT 2 cut(s) 502, 1107
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 9 cut(s) 257, 286, 409, 599, 620, 694, 788, 1043, 1235
HspAI GCGC 4 cut(s) 116, 380, 478, 674
KasI GGCGCC 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 948
Kzo9I GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
LmnI GCTCC 2 cut(s) 472, 1015
Lsp1109I GCAGC 7 cut(s) 58, 217, 321, 487, 673, 695, 873
LweI GCATC 1 cut(s) 346
MaeI CTAG 4 cut(s) 422, 753, 942, 981
MaeII ACGT 2 cut(s) 502, 1107
MaeIII GTNAC 3 cut(s) 275, 632, 1119
MalI GATC 7 cut(s) 14, 18, 175, 444, 488, 898, 928
MboI GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
MboII GAAGA 2 cut(s) 479, 1165
MflI RGATCY 2 cut(s) 173, 896
MluCI AATT 9 cut(s) 46, 510, 533, 557, 641, 976, 999, 1184, 1341
MluI ACGCGT 1 cut(s) 621
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 3 cut(s) 818, 827, 1076
MmeI TCCRAC 4 cut(s) 693, 801, 904, 929
Mph1103I ATGCAT 1 cut(s) 255
MseI TTAA 6 cut(s) 141, 666, 867, 947, 1340, 1345
MslI CAYNNNNRTG 2 cut(s) 287, 521
MspA1I CMGCKG 2 cut(s) 334, 686
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 2 cut(s) 106, 696
MspR9I CCNGG 4 cut(s) 135, 352, 520, 650
MvaI CCWGG 4 cut(s) 135, 352, 520, 650
MvnI CGCG 2 cut(s) 480, 623
MwoI GCNNNNNNNGC 9 cut(s) 122, 259, 356, 379, 433, 680, 692, 1040, 1214
NarI GGCGCC 1 cut(s) 116
NcoI CCATGG 2 cut(s) 405, 690
NdeI CATATG 1 cut(s) 541
NdeII GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
NlaIII CATG 9 cut(s) 257, 286, 409, 599, 620, 694, 788, 1043, 1235
NlaIV GGNNCC 4 cut(s) 117, 148, 261, 315
NmuCI GTSAC 1 cut(s) 632
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 2 cut(s) 1043, 1235
NspV TTCGAA 1 cut(s) 1162
PaeI GCATGC 1 cut(s) 1043
PagI TCATGA 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 323, 1196
PfoI TCCNGGA 1 cut(s) 648
Ple19I CGATCG 2 cut(s) 15, 19
PleI GAGTC 3 cut(s) 818, 826, 1076
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 3 cut(s) 818, 826, 1076
Ppu21I YACGTR 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 4 cut(s) 133, 350, 518, 648
PspFI CCCAGC 1 cut(s) 64
PspGI CCWGG 4 cut(s) 133, 350, 518, 648
PspN4I GGNNCC 4 cut(s) 117, 148, 261, 315
PspPI GGNCC 4 cut(s) 260, 314, 646, 902
PspPPI RGGWCCY 1 cut(s) 314
PsrI GAACNNNNNNTAC 2 cut(s) 139, 171
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 2 cut(s) 173, 896
PvuI CGATCG 2 cut(s) 15, 19
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
RseI CAYNNNNRTG 2 cut(s) 287, 521
SaqAI TTAA 6 cut(s) 141, 666, 867, 947, 1340, 1345
Sau3AI GATC 7 cut(s) 12, 16, 173, 442, 486, 896, 926
Sau96I GGNCC 4 cut(s) 260, 314, 646, 902
SchI GAGTC 3 cut(s) 818, 827, 1076
ScrFI CCNGG 4 cut(s) 135, 352, 520, 650
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 1329
SfoI GGCGCC 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 1162
SinI GGWCC 3 cut(s) 314, 646, 902
SmiMI CAYNNNNRTG 2 cut(s) 287, 521
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
SnaBI TACGTA 1 cut(s) 503
SphI GCATGC 1 cut(s) 1043
Sse9I AATT 9 cut(s) 46, 510, 533, 557, 641, 976, 999, 1184, 1341
SsiI CCGC 5 cut(s) 74, 332, 436, 603, 875
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 4 cut(s) 422, 753, 942, 981
StyD4I CCNGG 4 cut(s) 133, 350, 518, 648
StyI CCWWGG 2 cut(s) 405, 690
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 505, 1110
TaqI TCGA 3 cut(s) 15, 495, 1162
TasI AATT 9 cut(s) 46, 510, 533, 557, 641, 976, 999, 1184, 1341
TauI GCSGC 3 cut(s) 77, 334, 439
TfiI GAWTC 2 cut(s) 323, 1196
Tru1I TTAA 6 cut(s) 141, 666, 867, 947, 1340, 1345
Tru9I TTAA 6 cut(s) 141, 666, 867, 947, 1340, 1345
TscAI CASTG 1 cut(s) 1299
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 7 cut(s) 71, 230, 334, 475, 683, 686, 861
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 3 cut(s) 588, 605, 873
TspRI CASTG 1 cut(s) 1299
Vha464I CTTAAG 1 cut(s) 866
VpaK11BI GGWCC 3 cut(s) 314, 646, 902
XagI CCTNNNNNAGG 2 cut(s) 869, 917
XapI RAATTY 3 cut(s) 510, 533, 976
XceI RCATGY 2 cut(s) 1043, 1235
XcmI CCANNNNNNNNNTGG 2 cut(s) 289, 896
XspI CTAG 4 cut(s) 422, 753, 942, 981
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.