Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 364 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 105, 248, 286, 478 |
| AccII | CGCG | 1 cut(s) | 308 |
| AciI | CCGC | 6 cut(s) | 71, 80, 83, 201, 551, 705 |
| AcoI | YGGCCR | 1 cut(s) | 72 |
| AcyI | GRCGYC | 2 cut(s) | 361, 605 |
| AfaI | GTAC | 2 cut(s) | 377, 567 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 105, 248, 286, 403, 478 |
| AflIII | ACRYGT | 1 cut(s) | 568 |
| AjnI | CCWGG | 1 cut(s) | 699 |
| AluBI | AGCT | 1 cut(s) | 677 |
| AluI | AGCT | 1 cut(s) | 677 |
| AoxI | GGCC | 4 cut(s) | 72, 442, 702, 738 |
| ApeKI | GCWGC | 3 cut(s) | 29, 331, 593 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 351, 383, 482, 514 |
| AspLEI | GCGC | 4 cut(s) | 55, 241, 310, 336 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 5 cut(s) | 88, 305, 358, 418, 448 |
| AvaII | GGWCC | 1 cut(s) | 203 |
| AxyI | CCTNAGG | 1 cut(s) | 742 |
| BanII | GRGCYC | 2 cut(s) | 126, 750 |
| BbvI | GCAGC | 3 cut(s) | 16, 343, 580 |
| BccI | CCATC | 5 cut(s) | 20, 107, 242, 292, 541 |
| BciT130I | CCWGG | 1 cut(s) | 701 |
| BfaI | CTAG | 5 cut(s) | 65, 600, 618, 633, 650 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 80 |
| BisI | GCNGC | 7 cut(s) | 30, 72, 81, 84, 332, 594, 705 |
| BlsI | GCNGC | 7 cut(s) | 31, 73, 82, 85, 333, 595, 706 |
| Bme1390I | CCNGG | 1 cut(s) | 701 |
| Bme18I | GGWCC | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 4 cut(s) | 273, 534, 698, 749 |
| BmrFI | CCNGG | 1 cut(s) | 701 |
| BmsI | GCATC | 2 cut(s) | 102, 345 |
| BpmI | CTGGAG | 1 cut(s) | 519 |
| BpuEI | CTTGAG | 1 cut(s) | 671 |
| BsaHI | GRCGYC | 2 cut(s) | 361, 605 |
| BsaJI | CCNNGG | 4 cut(s) | 21, 196, 206, 285 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 105, 248, 286, 403, 478 |
| Bse118I | RCCGGY | 1 cut(s) | 74 |
| Bse1I | ACTGG | 2 cut(s) | 348, 536 |
| Bse21I | CCTNAGG | 1 cut(s) | 742 |
| Bse3DI | GCAATG | 1 cut(s) | 534 |
| BseBI | CCWGG | 1 cut(s) | 701 |
| BseDI | CCNNGG | 4 cut(s) | 21, 196, 206, 285 |
| BseGI | GGATG | 6 cut(s) | 117, 303, 328, 336, 468, 491 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 105, 248, 286, 403, 478 |
| BseMI | GCAATG | 1 cut(s) | 534 |
| BseMII | CTCAG | 1 cut(s) | 756 |
| BseNI | ACTGG | 2 cut(s) | 348, 536 |
| BseRI | GAGGAG | 1 cut(s) | 221 |
| BseX3I | CGGCCG | 1 cut(s) | 72 |
| BseXI | GCAGC | 3 cut(s) | 16, 343, 580 |
| BsgI | GTGCAG | 1 cut(s) | 542 |
| Bsh1236I | CGCG | 1 cut(s) | 308 |
| Bsh1285I | CGRYCG | 1 cut(s) | 75 |
| BshFI | GGCC | 4 cut(s) | 74, 444, 704, 740 |
| BsiEI | CGRYCG | 1 cut(s) | 75 |
| BsiSI | CCGG | 1 cut(s) | 75 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 105, 248, 286, 403, 478 |
| BsnI | GGCC | 4 cut(s) | 74, 444, 704, 740 |
| Bsp1286I | GDGCHC | 2 cut(s) | 126, 750 |
| Bsp1407I | TGTACA | 1 cut(s) | 565 |
| Bsp143I | GATC | 4 cut(s) | 178, 412, 646, 682 |
| Bsp19I | CCATGG | 3 cut(s) | 196, 206, 285 |
| BspACI | CCGC | 6 cut(s) | 71, 80, 83, 201, 551, 705 |
| BspANI | GGCC | 4 cut(s) | 74, 444, 704, 740 |
| BspCNI | CTCAG | 1 cut(s) | 755 |
| BspFNI | CGCG | 1 cut(s) | 308 |
| BspHI | TCATGA | 1 cut(s) | 679 |
| BspLI | GGNNCC | 4 cut(s) | 273, 534, 698, 749 |
| BspQI | GCTCTTC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 1 cut(s) | 534 |
| BsrFI | RCCGGY | 1 cut(s) | 74 |
| BsrGI | TGTACA | 1 cut(s) | 565 |
| BsrI | ACTGG | 2 cut(s) | 348, 536 |
| BssAI | RCCGGY | 1 cut(s) | 74 |
| BssECI | CCNNGG | 4 cut(s) | 21, 196, 206, 285 |
| BssMI | GATC | 4 cut(s) | 178, 412, 646, 682 |
| BssNI | GRCGYC | 2 cut(s) | 361, 605 |
| BssT1I | CCWWGG | 3 cut(s) | 196, 206, 285 |
| Bst2UI | CCWGG | 1 cut(s) | 701 |
| Bst4CI | ACNGT | 5 cut(s) | 22, 317, 380, 403, 458 |
| Bst6I | CTCTTC | 1 cut(s) | 321 |
| BstACI | GRCGYC | 2 cut(s) | 361, 605 |
| BstAUI | TGTACA | 1 cut(s) | 565 |
| BstC8I | GCNNGC | 1 cut(s) | 525 |
| BstDEI | CTNAG | 1 cut(s) | 742 |
| BstDSI | CCRYGG | 4 cut(s) | 21, 196, 206, 285 |
| BstF5I | GGATG | 6 cut(s) | 117, 303, 328, 336, 468, 491 |
| BstFNI | CGCG | 1 cut(s) | 308 |
| BstHHI | GCGC | 4 cut(s) | 55, 241, 310, 336 |
| BstKTI | GATC | 4 cut(s) | 181, 415, 649, 685 |
| BstMBI | GATC | 4 cut(s) | 178, 412, 646, 682 |
| BstMCI | CGRYCG | 1 cut(s) | 75 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 35, 77, 80, 121, 602 |
| BstNI | CCWGG | 1 cut(s) | 701 |
| BstNSI | RCATGY | 1 cut(s) | 572 |
| BstSCI | CCNGG | 1 cut(s) | 699 |
| BstUI | CGCG | 1 cut(s) | 308 |
| BstV1I | GCAGC | 3 cut(s) | 16, 343, 580 |
| BstZI | CGGCCG | 1 cut(s) | 72 |
| Bsu36I | CCTNAGG | 1 cut(s) | 742 |
| BsuRI | GGCC | 4 cut(s) | 74, 444, 704, 740 |
| BtgI | CCRYGG | 4 cut(s) | 21, 196, 206, 285 |
| BtsCI | GGATG | 6 cut(s) | 117, 303, 328, 336, 468, 491 |
| Cac8I | GCNNGC | 1 cut(s) | 525 |
| CciI | TCATGA | 1 cut(s) | 679 |
| CfoI | GCGC | 4 cut(s) | 55, 241, 310, 336 |
| Cfr10I | RCCGGY | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CseI | GACGC | 1 cut(s) | 594 |
| Csp6I | GTAC | 2 cut(s) | 376, 566 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 439, 474 |
| CviAII | CATG | 7 cut(s) | 134, 197, 207, 286, 473, 569, 680 |
| CviQI | GTAC | 2 cut(s) | 376, 566 |
| DdeI | CTNAG | 1 cut(s) | 742 |
| DpnI | GATC | 4 cut(s) | 180, 414, 648, 684 |
| DpnII | GATC | 4 cut(s) | 178, 412, 646, 682 |
| EaeI | YGGCCR | 1 cut(s) | 72 |
| EagI | CGGCCG | 1 cut(s) | 72 |
| Eam1104I | CTCTTC | 1 cut(s) | 321 |
| EarI | CTCTTC | 1 cut(s) | 321 |
| EclXI | CGGCCG | 1 cut(s) | 72 |
| Eco130I | CCWWGG | 3 cut(s) | 196, 206, 285 |
| Eco147I | AGGCCT | 2 cut(s) | 444, 740 |
| Eco24I | GRGCYC | 2 cut(s) | 126, 750 |
| Eco47I | GGWCC | 1 cut(s) | 203 |
| Eco52I | CGGCCG | 1 cut(s) | 72 |
| Eco81I | CCTNAGG | 1 cut(s) | 742 |
| EcoRII | CCWGG | 1 cut(s) | 699 |
| EcoT14I | CCWWGG | 3 cut(s) | 196, 206, 285 |
| EcoT38I | GRGCYC | 2 cut(s) | 126, 750 |
| ErhI | CCWWGG | 3 cut(s) | 196, 206, 285 |
| FaeI | CATG | 7 cut(s) | 137, 200, 210, 289, 476, 572, 683 |
| FatI | CATG | 7 cut(s) | 133, 196, 206, 285, 472, 568, 679 |
| FauI | CCCGC | 1 cut(s) | 544 |
| FauNDI | CATATG | 1 cut(s) | 244 |
| Fnu4HI | GCNGC | 7 cut(s) | 30, 72, 81, 84, 332, 594, 705 |
| FokI | GGATG | 6 cut(s) | 124, 310, 323, 335, 455, 498 |
| FriOI | GRGCYC | 2 cut(s) | 126, 750 |
| Fsp4HI | GCNGC | 7 cut(s) | 30, 72, 81, 84, 332, 594, 705 |
| FspBI | CTAG | 5 cut(s) | 65, 600, 618, 633, 650 |
| GlaI | GCGC | 4 cut(s) | 54, 240, 309, 335 |
| GluI | GCNGC | 7 cut(s) | 30, 72, 81, 84, 332, 594, 705 |
| GsuI | CTGGAG | 1 cut(s) | 519 |
| HaeIII | GGCC | 4 cut(s) | 74, 444, 704, 740 |
| HapII | CCGG | 1 cut(s) | 75 |
| HgaI | GACGC | 1 cut(s) | 594 |
| HhaI | GCGC | 4 cut(s) | 55, 241, 310, 336 |
| Hin1I | GRCGYC | 2 cut(s) | 361, 605 |
| Hin1II | CATG | 7 cut(s) | 137, 200, 210, 289, 476, 572, 683 |
| Hin6I | GCGC | 4 cut(s) | 53, 239, 308, 334 |
| HinP1I | GCGC | 4 cut(s) | 53, 239, 308, 334 |
| HinfI | GANTC | 6 cut(s) | 8, 150, 173, 266, 581, 636 |
| HpaII | CCGG | 1 cut(s) | 75 |
| HphI | GGTGA | 5 cut(s) | 88, 305, 358, 418, 448 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 178, 183, 341 |
| Hpy188III | TCNNGA | 3 cut(s) | 609, 680, 751 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 5 cut(s) | 22, 317, 380, 403, 458 |
| HpyCH4IV | ACGT | 1 cut(s) | 361 |
| HpyCH4V | TGCA | 4 cut(s) | 450, 523, 596, 671 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 35, 77, 80, 121, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 742 |
| HpySE526I | ACGT | 1 cut(s) | 361 |
| Hsp92I | GRCGYC | 2 cut(s) | 361, 605 |
| Hsp92II | CATG | 7 cut(s) | 137, 200, 210, 289, 476, 572, 683 |
| HspAI | GCGC | 4 cut(s) | 53, 239, 308, 334 |
| Kzo9I | GATC | 4 cut(s) | 178, 412, 646, 682 |
| LguI | GCTCTTC | 1 cut(s) | 321 |
| LmnI | GCTCC | 3 cut(s) | 234, 538, 753 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 343, 580 |
| LweI | GCATC | 2 cut(s) | 102, 345 |
| MaeI | CTAG | 5 cut(s) | 65, 600, 618, 633, 650 |
| MaeII | ACGT | 1 cut(s) | 361 |
| MaeIII | GTNAC | 3 cut(s) | 94, 255, 488 |
| MalI | GATC | 4 cut(s) | 180, 414, 648, 684 |
| MboI | GATC | 4 cut(s) | 178, 412, 646, 682 |
| MboII | GAAGA | 2 cut(s) | 338, 590 |
| MhlI | GDGCHC | 2 cut(s) | 126, 750 |
| MluCI | AATT | 2 cut(s) | 161, 365 |
| MlyI | GAGTC | 2 cut(s) | 260, 630 |
| MmeI | TCCRAC | 2 cut(s) | 364, 648 |
| MnlI | CCTC | 8 cut(s) | 43, 102, 242, 285, 426, 469, 475, 751 |
| MspI | CCGG | 1 cut(s) | 75 |
| MspR9I | CCNGG | 1 cut(s) | 701 |
| MvaI | CCWGG | 1 cut(s) | 701 |
| MvnI | CGCG | 1 cut(s) | 308 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 35, 77, 80, 121, 602 |
| NcoI | CCATGG | 3 cut(s) | 196, 206, 285 |
| NdeI | CATATG | 1 cut(s) | 244 |
| NdeII | GATC | 4 cut(s) | 178, 412, 646, 682 |
| NlaIII | CATG | 7 cut(s) | 137, 200, 210, 289, 476, 572, 683 |
| NlaIV | GGNNCC | 4 cut(s) | 273, 534, 698, 749 |
| NmuCI | GTSAC | 3 cut(s) | 94, 255, 488 |
| NspI | RCATGY | 1 cut(s) | 572 |
| PagI | TCATGA | 1 cut(s) | 679 |
| PceI | AGGCCT | 2 cut(s) | 444, 740 |
| PciI | ACATGT | 1 cut(s) | 568 |
| PciSI | GCTCTTC | 1 cut(s) | 321 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 376 |
| PfeI | GAWTC | 4 cut(s) | 8, 150, 173, 581 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 105, 248, 286, 478 |
| PkrI | GCNGC | 7 cut(s) | 31, 73, 82, 85, 333, 595, 706 |
| PleI | GAGTC | 2 cut(s) | 260, 630 |
| PpsI | GAGTC | 2 cut(s) | 260, 630 |
| PscI | ACATGT | 1 cut(s) | 568 |
| Psp6I | CCWGG | 1 cut(s) | 699 |
| PspGI | CCWGG | 1 cut(s) | 699 |
| PspN4I | GGNNCC | 4 cut(s) | 273, 534, 698, 749 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| RsaI | GTAC | 2 cut(s) | 377, 567 |
| RsaNI | GTAC | 2 cut(s) | 376, 566 |
| SapI | GCTCTTC | 1 cut(s) | 321 |
| SatI | GCNGC | 7 cut(s) | 30, 72, 81, 84, 332, 594, 705 |
| Sau3AI | GATC | 4 cut(s) | 178, 412, 646, 682 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| SchI | GAGTC | 2 cut(s) | 260, 630 |
| ScrFI | CCNGG | 1 cut(s) | 701 |
| SduI | GDGCHC | 2 cut(s) | 126, 750 |
| SetI | ASST | 6 cut(s) | 364, 480, 495, 522, 679, 728 |
| SfaNI | GCATC | 2 cut(s) | 102, 345 |
| SinI | GGWCC | 1 cut(s) | 203 |
| SmlI | CTYRAG | 1 cut(s) | 686 |
| SmoI | CTYRAG | 1 cut(s) | 686 |
| Sse9I | AATT | 2 cut(s) | 161, 365 |
| SseBI | AGGCCT | 2 cut(s) | 444, 740 |
| SsiI | CCGC | 6 cut(s) | 71, 80, 83, 201, 551, 705 |
| SspMI | CTAG | 5 cut(s) | 65, 600, 618, 633, 650 |
| StuI | AGGCCT | 2 cut(s) | 444, 740 |
| StyD4I | CCNGG | 1 cut(s) | 699 |
| StyI | CCWWGG | 3 cut(s) | 196, 206, 285 |
| TaaI | ACNGT | 5 cut(s) | 22, 317, 380, 403, 458 |
| TaiI | ACGT | 1 cut(s) | 364 |
| TaqI | TCGA | 2 cut(s) | 217, 264 |
| TasI | AATT | 2 cut(s) | 161, 365 |
| TatI | WGTACW | 1 cut(s) | 565 |
| TauI | GCSGC | 4 cut(s) | 74, 83, 86, 707 |
| TfiI | GAWTC | 4 cut(s) | 8, 150, 173, 581 |
| TseFI | GTSAC | 3 cut(s) | 94, 255, 488 |
| TseI | GCWGC | 3 cut(s) | 29, 331, 593 |
| Tsp45I | GTSAC | 3 cut(s) | 94, 255, 488 |
| TspDTI | ATGAA | 3 cut(s) | 142, 339, 457 |
| TspGWI | ACGGA | 1 cut(s) | 82 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 105, 248, 286, 478 |
| VpaK11BI | GGWCC | 1 cut(s) | 203 |
| XceI | RCATGY | 1 cut(s) | 572 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 19, 725 |
| XspI | CTAG | 5 cut(s) | 65, 600, 618, 633, 650 |
| ZraI | GACGTC | 1 cut(s) | 362 |