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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 160 |
| AciI | CCGC | 1 cut(s) | 364 |
| AclWI | GGATC | 1 cut(s) | 95 |
| AcsI | RAATTY | 2 cut(s) | 140, 550 |
| AcyI | GRCGYC | 1 cut(s) | 460 |
| AfaI | GTAC | 4 cut(s) | 22, 124, 249, 289 |
| AgsI | TTSAA | 3 cut(s) | 140, 232, 550 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AleI | CACNNNNGTG | 1 cut(s) | 14 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 500, 532 |
| Alw21I | GWGCWC | 2 cut(s) | 323, 414 |
| Alw26I | GTCTC | 3 cut(s) | 260, 439, 577 |
| AlwI | GGATC | 1 cut(s) | 95 |
| Ama87I | CYCGRG | 1 cut(s) | 235 |
| Aor13HI | TCCGGA | 1 cut(s) | 160 |
| ApoI | RAATTY | 2 cut(s) | 140, 550 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 4 cut(s) | 166, 349, 429, 635 |
| AvaI | CYCGRG | 1 cut(s) | 235 |
| BaeGI | GKGCMC | 1 cut(s) | 281 |
| Bbv12I | GWGCWC | 2 cut(s) | 323, 414 |
| BccI | CCATC | 2 cut(s) | 40, 256 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 23, 57 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BcoDI | GTCTC | 3 cut(s) | 260, 439, 577 |
| BfaI | CTAG | 2 cut(s) | 29, 652 |
| BmcAI | AGTACT | 1 cut(s) | 289 |
| Bme1390I | CCNGG | 1 cut(s) | 127 |
| BmeT110I | CYCGRG | 1 cut(s) | 235 |
| BmrFI | CCNGG | 1 cut(s) | 127 |
| BmsI | GCATC | 1 cut(s) | 389 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 277, 309 |
| BsaHI | GRCGYC | 1 cut(s) | 460 |
| BsaI | GGTCTC | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 1 cut(s) | 454 |
| BsaWI | WCCGGW | 2 cut(s) | 148, 160 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 257, 287, 500, 530, 611, 641 |
| Bse1I | ACTGG | 1 cut(s) | 435 |
| BseAI | TCCGGA | 1 cut(s) | 160 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 454 |
| BseGI | GGATG | 1 cut(s) | 51 |
| BseMII | CTCAG | 2 cut(s) | 399, 621 |
| BseNI | ACTGG | 1 cut(s) | 435 |
| BseRI | GAGGAG | 3 cut(s) | 344, 521, 547 |
| BseSI | GKGCMC | 1 cut(s) | 281 |
| BseYI | CCCAGC | 1 cut(s) | 360 |
| BsiHKAI | GWGCWC | 2 cut(s) | 323, 414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 235 |
| BsiSI | CCGG | 2 cut(s) | 149, 161 |
| BslFI | GGGAC | 1 cut(s) | 619 |
| BsmAI | GTCTC | 3 cut(s) | 260, 439, 577 |
| BsmBI | CGTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 1 cut(s) | 619 |
| Bso31I | GGTCTC | 1 cut(s) | 439 |
| BsoBI | CYCGRG | 1 cut(s) | 235 |
| Bsp1286I | GDGCHC | 3 cut(s) | 281, 323, 414 |
| Bsp13I | TCCGGA | 1 cut(s) | 160 |
| Bsp143I | GATC | 2 cut(s) | 6, 87 |
| BspACI | CCGC | 1 cut(s) | 364 |
| BspCNI | CTCAG | 2 cut(s) | 400, 622 |
| BspEI | TCCGGA | 1 cut(s) | 160 |
| BspPI | GGATC | 1 cut(s) | 95 |
| BspQI | GCTCTTC | 1 cut(s) | 72 |
| BspTNI | GGTCTC | 1 cut(s) | 439 |
| BsrI | ACTGG | 1 cut(s) | 435 |
| BssECI | CCNNGG | 1 cut(s) | 454 |
| BssMI | GATC | 2 cut(s) | 6, 87 |
| BssNI | GRCGYC | 1 cut(s) | 460 |
| BssT1I | CCWWGG | 1 cut(s) | 454 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst6I | CTCTTC | 2 cut(s) | 72, 354 |
| BstACI | GRCGYC | 1 cut(s) | 460 |
| BstDEI | CTNAG | 3 cut(s) | 408, 441, 630 |
| BstF5I | GGATG | 1 cut(s) | 51 |
| BstKTI | GATC | 2 cut(s) | 9, 90 |
| BstMAI | GTCTC | 3 cut(s) | 260, 439, 577 |
| BstMBI | GATC | 2 cut(s) | 6, 87 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstSCI | CCNGG | 1 cut(s) | 125 |
| BstSLI | GKGCMC | 1 cut(s) | 281 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 599 |
| BtsCI | GGATG | 1 cut(s) | 51 |
| BtsI | GCAGTG | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 1 cut(s) | 89 |
| CseI | GACGC | 1 cut(s) | 449 |
| Csp6I | GTAC | 4 cut(s) | 21, 123, 248, 288 |
| CviAII | CATG | 2 cut(s) | 332, 599 |
| CviJI | RGCY | 4 cut(s) | 218, 491, 545, 651 |
| CviKI_1 | RGCY | 4 cut(s) | 218, 491, 545, 651 |
| CviQI | GTAC | 4 cut(s) | 21, 123, 248, 288 |
| DdeI | CTNAG | 3 cut(s) | 408, 441, 630 |
| DpnI | GATC | 2 cut(s) | 8, 89 |
| DpnII | GATC | 2 cut(s) | 6, 87 |
| Eam1104I | CTCTTC | 2 cut(s) | 72, 354 |
| EarI | CTCTTC | 2 cut(s) | 72, 354 |
| Eco130I | CCWWGG | 1 cut(s) | 454 |
| Eco31I | GGTCTC | 1 cut(s) | 439 |
| Eco88I | CYCGRG | 1 cut(s) | 235 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoT14I | CCWWGG | 1 cut(s) | 454 |
| EcoT22I | ATGCAT | 1 cut(s) | 600 |
| ErhI | CCWWGG | 1 cut(s) | 454 |
| Esp3I | CGTCTC | 1 cut(s) | 260 |
| FaeI | CATG | 2 cut(s) | 335, 602 |
| FaqI | GGGAC | 1 cut(s) | 619 |
| FatI | CATG | 2 cut(s) | 331, 598 |
| FauNDI | CATATG | 1 cut(s) | 594 |
| FokI | GGATG | 1 cut(s) | 58 |
| FspBI | CTAG | 2 cut(s) | 29, 652 |
| GsaI | CCCAGC | 1 cut(s) | 364 |
| HapII | CCGG | 2 cut(s) | 149, 161 |
| HgaI | GACGC | 1 cut(s) | 449 |
| Hin1I | GRCGYC | 1 cut(s) | 460 |
| Hin1II | CATG | 2 cut(s) | 335, 602 |
| HinfI | GANTC | 9 cut(s) | 25, 118, 157, 328, 343, 394, 557, 626, 632 |
| HpaII | CCGG | 2 cut(s) | 149, 161 |
| HphI | GGTGA | 4 cut(s) | 166, 349, 429, 635 |
| Hpy188I | TCNGA | 3 cut(s) | 45, 409, 631 |
| Hpy188III | TCNNGA | 4 cut(s) | 91, 161, 203, 566 |
| Hpy99I | CGWCG | 2 cut(s) | 114, 328 |
| HpyAV | CCTTC | 1 cut(s) | 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 404 |
| HpyCH4V | TGCA | 3 cut(s) | 598, 610, 644 |
| HpyF3I | CTNAG | 3 cut(s) | 408, 441, 630 |
| HpySE526I | ACGT | 1 cut(s) | 404 |
| Hsp92I | GRCGYC | 1 cut(s) | 460 |
| Hsp92II | CATG | 2 cut(s) | 335, 602 |
| Kpn2I | TCCGGA | 1 cut(s) | 160 |
| Kzo9I | GATC | 2 cut(s) | 6, 87 |
| LguI | GCTCTTC | 1 cut(s) | 72 |
| LpnPI | CCDG | 9 cut(s) | 74, 112, 139, 162, 174, 374, 416, 488, 551 |
| LweI | GCATC | 1 cut(s) | 389 |
| MaeI | CTAG | 2 cut(s) | 29, 652 |
| MaeII | ACGT | 1 cut(s) | 404 |
| MaeIII | GTNAC | 1 cut(s) | 203 |
| MalI | GATC | 2 cut(s) | 8, 89 |
| MboI | GATC | 2 cut(s) | 6, 87 |
| MboII | GAAGA | 6 cut(s) | 86, 89, 341, 457, 460, 523 |
| MhlI | GDGCHC | 3 cut(s) | 281, 323, 414 |
| MluCI | AATT | 4 cut(s) | 140, 164, 425, 550 |
| MlyI | GAGTC | 6 cut(s) | 19, 352, 403, 566, 635, 641 |
| Mph1103I | ATGCAT | 1 cut(s) | 600 |
| MroI | TCCGGA | 1 cut(s) | 160 |
| MroXI | GAANNNNTTC | 1 cut(s) | 515 |
| MseI | TTAA | 2 cut(s) | 167, 486 |
| MslI | CAYNNNNRTG | 3 cut(s) | 14, 417, 597 |
| MspA1I | CMGCKG | 1 cut(s) | 364 |
| MspI | CCGG | 2 cut(s) | 149, 161 |
| MspR9I | CCNGG | 1 cut(s) | 127 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| NdeI | CATATG | 1 cut(s) | 594 |
| NdeII | GATC | 2 cut(s) | 6, 87 |
| NlaIII | CATG | 2 cut(s) | 335, 602 |
| NmuCI | GTSAC | 1 cut(s) | 203 |
| NsiI | ATGCAT | 1 cut(s) | 600 |
| OliI | CACNNNNGTG | 1 cut(s) | 14 |
| PaeR7I | CTCGAG | 1 cut(s) | 235 |
| PciSI | GCTCTTC | 1 cut(s) | 72 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 118, 323 |
| PdmI | GAANNNNTTC | 1 cut(s) | 515 |
| PfeI | GAWTC | 3 cut(s) | 118, 157, 328 |
| PleI | GAGTC | 6 cut(s) | 19, 351, 402, 565, 634, 640 |
| PpsI | GAGTC | 6 cut(s) | 19, 351, 402, 565, 634, 640 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspFI | CCCAGC | 1 cut(s) | 360 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspXI | VCTCGAGB | 1 cut(s) | 235 |
| RsaI | GTAC | 4 cut(s) | 22, 124, 249, 289 |
| RsaNI | GTAC | 4 cut(s) | 21, 123, 248, 288 |
| RseI | CAYNNNNRTG | 3 cut(s) | 14, 417, 597 |
| SapI | GCTCTTC | 1 cut(s) | 72 |
| SaqAI | TTAA | 2 cut(s) | 167, 486 |
| Sau3AI | GATC | 2 cut(s) | 6, 87 |
| ScaI | AGTACT | 1 cut(s) | 289 |
| SchI | GAGTC | 6 cut(s) | 19, 352, 403, 566, 635, 641 |
| ScrFI | CCNGG | 1 cut(s) | 127 |
| SduI | GDGCHC | 3 cut(s) | 281, 323, 414 |
| SetI | ASST | 8 cut(s) | 128, 189, 312, 407, 442, 456, 486, 588 |
| SfaNI | GCATC | 1 cut(s) | 389 |
| Sfr274I | CTCGAG | 1 cut(s) | 235 |
| SlaI | CTCGAG | 1 cut(s) | 235 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 14, 417, 597 |
| SmlI | CTYRAG | 1 cut(s) | 235 |
| SmoI | CTYRAG | 1 cut(s) | 235 |
| Sse9I | AATT | 4 cut(s) | 140, 164, 425, 550 |
| SsiI | CCGC | 1 cut(s) | 364 |
| SspMI | CTAG | 2 cut(s) | 29, 652 |
| StyD4I | CCNGG | 1 cut(s) | 125 |
| StyI | CCWWGG | 1 cut(s) | 454 |
| TaiI | ACGT | 1 cut(s) | 407 |
| TaqI | TCGA | 2 cut(s) | 236, 326 |
| TasI | AATT | 4 cut(s) | 140, 164, 425, 550 |
| TatI | WGTACW | 2 cut(s) | 247, 287 |
| TfiI | GAWTC | 3 cut(s) | 118, 157, 328 |
| Tru1I | TTAA | 2 cut(s) | 167, 486 |
| Tru9I | TTAA | 2 cut(s) | 167, 486 |
| TscAI | CASTG | 1 cut(s) | 89 |
| TseFI | GTSAC | 1 cut(s) | 203 |
| Tsp45I | GTSAC | 1 cut(s) | 203 |
| TspRI | CASTG | 1 cut(s) | 89 |
| XapI | RAATTY | 2 cut(s) | 140, 550 |
| XhoI | CTCGAG | 1 cut(s) | 235 |
| XmnI | GAANNNNTTC | 1 cut(s) | 515 |
| XspI | CTAG | 2 cut(s) | 29, 652 |
| ZrmI | AGTACT | 1 cut(s) | 289 |
| Zsp2I | ATGCAT | 1 cut(s) | 600 |