Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 307 |
| Acc36I | ACCTGC | 1 cut(s) | 307 |
| AccB1I | GGYRCC | 2 cut(s) | 319, 587 |
| AccII | CGCG | 2 cut(s) | 245, 566 |
| AciI | CCGC | 2 cut(s) | 245, 566 |
| AclWI | GGATC | 2 cut(s) | 139, 568 |
| AcoI | YGGCCR | 1 cut(s) | 252 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AfaI | GTAC | 1 cut(s) | 412 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 584 |
| AgsI | TTSAA | 2 cut(s) | 397, 463 |
| AjiI | CACGTC | 1 cut(s) | 382 |
| AluBI | AGCT | 3 cut(s) | 302, 359, 478 |
| AluI | AGCT | 3 cut(s) | 302, 359, 478 |
| AlwI | GGATC | 2 cut(s) | 139, 568 |
| AoxI | GGCC | 1 cut(s) | 252 |
| ApeKI | GCWGC | 1 cut(s) | 385 |
| AspLEI | GCGC | 1 cut(s) | 590 |
| AsuII | TTCGAA | 1 cut(s) | 103 |
| BanI | GGYRCC | 2 cut(s) | 319, 587 |
| BbvCI | CCTCAGC | 1 cut(s) | 330 |
| BbvI | GCAGC | 1 cut(s) | 372 |
| BccI | CCATC | 2 cut(s) | 244, 450 |
| BceAI | ACGGC | 1 cut(s) | 601 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BfaI | CTAG | 2 cut(s) | 479, 613 |
| BfmI | CTRYAG | 1 cut(s) | 532 |
| BfoI | RGCGCY | 1 cut(s) | 591 |
| BfuAI | ACCTGC | 1 cut(s) | 307 |
| BglII | AGATCT | 1 cut(s) | 66 |
| BisI | GCNGC | 2 cut(s) | 246, 386 |
| BlsI | GCNGC | 2 cut(s) | 247, 387 |
| BmgBI | CACGTC | 1 cut(s) | 382 |
| BmiI | GGNNCC | 3 cut(s) | 291, 321, 589 |
| BmsI | GCATC | 2 cut(s) | 431, 591 |
| BoxI | GACNNNNGTC | 1 cut(s) | 219 |
| Bpu10I | CCTNAGC | 1 cut(s) | 330 |
| Bpu14I | TTCGAA | 1 cut(s) | 103 |
| BsaBI | GATNNNNATC | 1 cut(s) | 65 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaWI | WCCGGW | 1 cut(s) | 238 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 584 |
| Bse118I | RCCGGY | 1 cut(s) | 254 |
| Bse8I | GATNNNNATC | 1 cut(s) | 65 |
| BseGI | GGATG | 2 cut(s) | 274, 461 |
| BseJI | GATNNNNATC | 1 cut(s) | 65 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 584 |
| BseMII | CTCAG | 2 cut(s) | 48, 321 |
| BseXI | GCAGC | 1 cut(s) | 372 |
| Bsh1236I | CGCG | 2 cut(s) | 245, 566 |
| BshFI | GGCC | 1 cut(s) | 254 |
| BshNI | GGYRCC | 2 cut(s) | 319, 587 |
| BsiSI | CCGG | 2 cut(s) | 239, 255 |
| BslFI | GGGAC | 1 cut(s) | 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 584 |
| BsmFI | GGGAC | 1 cut(s) | 467 |
| BsmI | GAATGC | 1 cut(s) | 118 |
| BsnI | GGCC | 1 cut(s) | 254 |
| Bsp119I | TTCGAA | 1 cut(s) | 103 |
| Bsp143I | GATC | 4 cut(s) | 66, 131, 160, 573 |
| BspACI | CCGC | 2 cut(s) | 245, 566 |
| BspANI | GGCC | 1 cut(s) | 254 |
| BspCNI | CTCAG | 2 cut(s) | 47, 322 |
| BspFNI | CGCG | 2 cut(s) | 245, 566 |
| BspLI | GGNNCC | 3 cut(s) | 291, 321, 589 |
| BspMI | ACCTGC | 1 cut(s) | 307 |
| BspPI | GGATC | 2 cut(s) | 139, 568 |
| BspQI | GCTCTTC | 2 cut(s) | 177, 183 |
| BspT104I | TTCGAA | 1 cut(s) | 103 |
| BspT107I | GGYRCC | 2 cut(s) | 319, 587 |
| BsrFI | RCCGGY | 1 cut(s) | 254 |
| BssAI | RCCGGY | 1 cut(s) | 254 |
| BssMI | GATC | 4 cut(s) | 66, 131, 160, 573 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| Bst4CI | ACNGT | 1 cut(s) | 533 |
| Bst6I | CTCTTC | 2 cut(s) | 177, 183 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstBI | TTCGAA | 1 cut(s) | 103 |
| BstDEI | CTNAG | 3 cut(s) | 34, 330, 495 |
| BstF5I | GGATG | 2 cut(s) | 274, 461 |
| BstFNI | CGCG | 2 cut(s) | 245, 566 |
| BstH2I | RGCGCY | 1 cut(s) | 591 |
| BstHHI | GCGC | 1 cut(s) | 590 |
| BstKTI | GATC | 4 cut(s) | 69, 134, 163, 576 |
| BstMBI | GATC | 4 cut(s) | 66, 131, 160, 573 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 251 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 219 |
| BstSFI | CTRYAG | 1 cut(s) | 532 |
| BstUI | CGCG | 2 cut(s) | 245, 566 |
| BstV1I | GCAGC | 1 cut(s) | 372 |
| BstX2I | RGATCY | 2 cut(s) | 66, 131 |
| BstYI | RGATCY | 2 cut(s) | 66, 131 |
| BsuRI | GGCC | 1 cut(s) | 254 |
| BtgZI | GCGATG | 1 cut(s) | 263 |
| BtrI | CACGTC | 1 cut(s) | 382 |
| BtsCI | GGATG | 2 cut(s) | 274, 461 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| BveI | ACCTGC | 1 cut(s) | 307 |
| CfoI | GCGC | 1 cut(s) | 590 |
| Cfr10I | RCCGGY | 1 cut(s) | 254 |
| CseI | GACGC | 3 cut(s) | 251, 354, 572 |
| Csp6I | GTAC | 1 cut(s) | 411 |
| CviAII | CATG | 2 cut(s) | 307, 389 |
| CviJI | RGCY | 8 cut(s) | 33, 170, 235, 254, 302, 359, 393, 478 |
| CviKI_1 | RGCY | 8 cut(s) | 33, 170, 235, 254, 302, 359, 393, 478 |
| CviQI | GTAC | 1 cut(s) | 411 |
| DdeI | CTNAG | 3 cut(s) | 34, 330, 495 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 4 cut(s) | 68, 133, 162, 575 |
| DpnII | GATC | 4 cut(s) | 66, 131, 160, 573 |
| EaeI | YGGCCR | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 2 cut(s) | 177, 183 |
| EarI | CTCTTC | 2 cut(s) | 177, 183 |
| EcoT22I | ATGCAT | 1 cut(s) | 606 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| FaeI | CATG | 2 cut(s) | 310, 392 |
| FaiI | YATR | 6 cut(s) | 21, 308, 363, 390, 539, 606 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 101, 133 |
| FaqI | GGGAC | 1 cut(s) | 467 |
| FatI | CATG | 2 cut(s) | 306, 388 |
| FauI | CCCGC | 1 cut(s) | 559 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 2 cut(s) | 246, 386 |
| FokI | GGATG | 2 cut(s) | 281, 468 |
| Fsp4HI | GCNGC | 2 cut(s) | 246, 386 |
| FspBI | CTAG | 2 cut(s) | 479, 613 |
| GlaI | GCGC | 1 cut(s) | 589 |
| GluI | GCNGC | 2 cut(s) | 246, 386 |
| HaeII | RGCGCY | 1 cut(s) | 591 |
| HaeIII | GGCC | 1 cut(s) | 254 |
| HapII | CCGG | 2 cut(s) | 239, 255 |
| HgaI | GACGC | 3 cut(s) | 251, 354, 572 |
| HhaI | GCGC | 1 cut(s) | 590 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 2 cut(s) | 310, 392 |
| Hin6I | GCGC | 1 cut(s) | 588 |
| HinP1I | GCGC | 1 cut(s) | 588 |
| HindIII | AAGCTT | 1 cut(s) | 357 |
| HinfI | GANTC | 2 cut(s) | 46, 198 |
| HpaII | CCGG | 2 cut(s) | 239, 255 |
| Hpy188I | TCNGA | 3 cut(s) | 214, 225, 261 |
| Hpy188III | TCNNGA | 3 cut(s) | 70, 287, 463 |
| Hpy99I | CGWCG | 1 cut(s) | 225 |
| HpyAV | CCTTC | 2 cut(s) | 175, 293 |
| HpyCH4III | ACNGT | 1 cut(s) | 533 |
| HpyCH4IV | ACGT | 2 cut(s) | 263, 381 |
| HpyCH4V | TGCA | 4 cut(s) | 388, 422, 511, 604 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 251 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 330, 495 |
| HpySE526I | ACGT | 2 cut(s) | 263, 381 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 2 cut(s) | 310, 392 |
| HspAI | GCGC | 1 cut(s) | 588 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 4 cut(s) | 66, 131, 160, 573 |
| LguI | GCTCTTC | 2 cut(s) | 177, 183 |
| LmnI | GCTCC | 1 cut(s) | 313 |
| Lsp1109I | GCAGC | 1 cut(s) | 372 |
| LweI | GCATC | 2 cut(s) | 431, 591 |
| MaeI | CTAG | 2 cut(s) | 479, 613 |
| MaeII | ACGT | 2 cut(s) | 263, 381 |
| MaeIII | GTNAC | 3 cut(s) | 366, 377, 560 |
| MalI | GATC | 4 cut(s) | 68, 133, 162, 575 |
| MboI | GATC | 4 cut(s) | 66, 131, 160, 573 |
| MboII | GAAGA | 2 cut(s) | 164, 200 |
| MfeI | CAATTG | 1 cut(s) | 324 |
| MflI | RGATCY | 2 cut(s) | 66, 131 |
| MluCI | AATT | 3 cut(s) | 126, 324, 466 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MmeI | TCCRAC | 3 cut(s) | 203, 246, 385 |
| MnlI | CCTC | 4 cut(s) | 36, 178, 219, 325 |
| Mph1103I | ATGCAT | 1 cut(s) | 606 |
| MspI | CCGG | 2 cut(s) | 239, 255 |
| MunI | CAATTG | 1 cut(s) | 324 |
| Mva1269I | GAATGC | 1 cut(s) | 118 |
| MvnI | CGCG | 2 cut(s) | 245, 566 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 251 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NdeII | GATC | 4 cut(s) | 66, 131, 160, 573 |
| NlaIII | CATG | 2 cut(s) | 310, 392 |
| NlaIV | GGNNCC | 3 cut(s) | 291, 321, 589 |
| NmuCI | GTSAC | 3 cut(s) | 366, 377, 560 |
| NsiI | ATGCAT | 1 cut(s) | 606 |
| NspV | TTCGAA | 1 cut(s) | 103 |
| PaqCI | CACCTGC | 1 cut(s) | 307 |
| PciSI | GCTCTTC | 2 cut(s) | 177, 183 |
| PctI | GAATGC | 1 cut(s) | 118 |
| PfeI | GAWTC | 2 cut(s) | 46, 198 |
| PkrI | GCNGC | 2 cut(s) | 247, 387 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PshAI | GACNNNNGTC | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 3 cut(s) | 291, 321, 589 |
| PsuI | RGATCY | 2 cut(s) | 66, 131 |
| RsaI | GTAC | 1 cut(s) | 412 |
| RsaNI | GTAC | 1 cut(s) | 411 |
| SapI | GCTCTTC | 2 cut(s) | 177, 183 |
| SatI | GCNGC | 2 cut(s) | 246, 386 |
| Sau3AI | GATC | 4 cut(s) | 66, 131, 160, 573 |
| SetI | ASST | 9 cut(s) | 150, 266, 304, 321, 336, 361, 384, 402, 480 |
| SfaNI | GCATC | 2 cut(s) | 431, 591 |
| SfcI | CTRYAG | 1 cut(s) | 532 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| SfuI | TTCGAA | 1 cut(s) | 103 |
| Sse9I | AATT | 3 cut(s) | 126, 324, 466 |
| SsiI | CCGC | 2 cut(s) | 245, 566 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 2 cut(s) | 479, 613 |
| TaaI | ACNGT | 1 cut(s) | 533 |
| TaiI | ACGT | 2 cut(s) | 266, 384 |
| TaqI | TCGA | 2 cut(s) | 103, 572 |
| TasI | AATT | 3 cut(s) | 126, 324, 466 |
| TatI | WGTACW | 1 cut(s) | 410 |
| TauI | GCSGC | 1 cut(s) | 248 |
| TfiI | GAWTC | 2 cut(s) | 46, 198 |
| TscAI | CASTG | 1 cut(s) | 42 |
| TseFI | GTSAC | 3 cut(s) | 366, 377, 560 |
| TseI | GCWGC | 1 cut(s) | 385 |
| Tsp45I | GTSAC | 3 cut(s) | 366, 377, 560 |
| TspGWI | ACGGA | 1 cut(s) | 326 |
| TspRI | CASTG | 1 cut(s) | 42 |
| XspI | CTAG | 2 cut(s) | 479, 613 |
| Zsp2I | ATGCAT | 1 cut(s) | 606 |