Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccII | CGCG | 2 cut(s) | 395, 423 |
| AciI | CCGC | 1 cut(s) | 393 |
| AcsI | RAATTY | 3 cut(s) | 138, 377, 400 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 3 cut(s) | 40, 436, 451 |
| AfeI | AGCGCT | 1 cut(s) | 98 |
| AgsI | TTSAA | 4 cut(s) | 34, 83, 110, 329 |
| AjnI | CCWGG | 2 cut(s) | 25, 155 |
| AleI | CACNNNNGTG | 1 cut(s) | 299 |
| Alw26I | GTCTC | 2 cut(s) | 209, 233 |
| Aor51HI | AGCGCT | 1 cut(s) | 98 |
| AoxI | GGCC | 1 cut(s) | 70 |
| ApoI | RAATTY | 3 cut(s) | 138, 377, 400 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 208, 240 |
| AspLEI | GCGC | 5 cut(s) | 10, 99, 292, 397, 425 |
| AspS9I | GGNCC | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 200, 265 |
| AvaII | GGWCC | 1 cut(s) | 152 |
| BaeGI | GKGCMC | 1 cut(s) | 308 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BbsI | GAAGAC | 1 cut(s) | 254 |
| BccI | CCATC | 1 cut(s) | 229 |
| BceAI | ACGGC | 4 cut(s) | 303, 410, 422, 450 |
| BciT130I | CCWGG | 2 cut(s) | 27, 157 |
| BcoDI | GTCTC | 2 cut(s) | 209, 233 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfoI | RGCGCY | 3 cut(s) | 11, 100, 293 |
| Bme1390I | CCNGG | 2 cut(s) | 27, 157 |
| Bme18I | GGWCC | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 1 cut(s) | 152 |
| BmiI | GGNNCC | 4 cut(s) | 9, 153, 154, 366 |
| BmrFI | CCNGG | 2 cut(s) | 27, 157 |
| BmsI | GCATC | 1 cut(s) | 165 |
| BoxI | GACNNNNGTC | 1 cut(s) | 245 |
| BpiI | GAAGAC | 1 cut(s) | 254 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 2 cut(s) | 26, 155 |
| BseBI | CCWGG | 2 cut(s) | 27, 157 |
| BseDI | CCNNGG | 2 cut(s) | 26, 155 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 1 cut(s) | 377 |
| BseSI | GKGCMC | 1 cut(s) | 308 |
| Bsh1236I | CGCG | 2 cut(s) | 395, 423 |
| BshFI | GGCC | 1 cut(s) | 72 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BslFI | GGGAC | 1 cut(s) | 165 |
| BsmAI | GTCTC | 2 cut(s) | 209, 233 |
| BsmBI | CGTCTC | 1 cut(s) | 209 |
| BsmFI | GGGAC | 1 cut(s) | 165 |
| BsnI | GGCC | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 308 |
| BspACI | CCGC | 1 cut(s) | 393 |
| BspANI | GGCC | 1 cut(s) | 72 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BspFNI | CGCG | 2 cut(s) | 395, 423 |
| BspLI | GGNNCC | 4 cut(s) | 9, 153, 154, 366 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BssECI | CCNNGG | 2 cut(s) | 26, 155 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| Bst2UI | CCWGG | 2 cut(s) | 27, 157 |
| Bst4CI | ACNGT | 1 cut(s) | 220 |
| Bst6I | CTCTTC | 1 cut(s) | 354 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 2 cut(s) | 411, 463 |
| BstDEI | CTNAG | 1 cut(s) | 275 |
| BstFNI | CGCG | 2 cut(s) | 395, 423 |
| BstH2I | RGCGCY | 3 cut(s) | 11, 100, 293 |
| BstHHI | GCGC | 5 cut(s) | 10, 99, 292, 397, 425 |
| BstMAI | GTCTC | 2 cut(s) | 209, 233 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 392 |
| BstNI | CCWGG | 2 cut(s) | 27, 157 |
| BstNSI | RCATGY | 1 cut(s) | 323 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 245 |
| BstSCI | CCNGG | 2 cut(s) | 25, 155 |
| BstSLI | GKGCMC | 1 cut(s) | 308 |
| BstUI | CGCG | 2 cut(s) | 395, 423 |
| BstV2I | GAAGAC | 1 cut(s) | 254 |
| BsuRI | GGCC | 1 cut(s) | 72 |
| Cac8I | GCNNGC | 2 cut(s) | 411, 463 |
| CfoI | GCGC | 5 cut(s) | 10, 99, 292, 397, 425 |
| Cfr13I | GGNCC | 1 cut(s) | 152 |
| Csp6I | GTAC | 3 cut(s) | 39, 435, 450 |
| CviAII | CATG | 2 cut(s) | 146, 320 |
| CviJI | RGCY | 5 cut(s) | 22, 72, 125, 224, 367 |
| CviKI_1 | RGCY | 5 cut(s) | 22, 72, 125, 224, 367 |
| CviQI | GTAC | 3 cut(s) | 39, 435, 450 |
| DdeI | CTNAG | 1 cut(s) | 275 |
| DinI | GGCGCC | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 1 cut(s) | 354 |
| EarI | CTCTTC | 1 cut(s) | 354 |
| Eco147I | AGGCCT | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 152 |
| Eco47III | AGCGCT | 1 cut(s) | 98 |
| EcoO109I | RGGNCCY | 1 cut(s) | 152 |
| EcoRI | GAATTC | 1 cut(s) | 377 |
| EcoRII | CCWGG | 2 cut(s) | 25, 155 |
| EgeI | GGCGCC | 1 cut(s) | 9 |
| EheI | GGCGCC | 1 cut(s) | 9 |
| Esp3I | CGTCTC | 1 cut(s) | 209 |
| FaeI | CATG | 2 cut(s) | 149, 323 |
| FaiI | YATR | 7 cut(s) | 60, 65, 147, 195, 299, 321, 454 |
| FaqI | GGGAC | 1 cut(s) | 165 |
| FatI | CATG | 2 cut(s) | 145, 319 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GlaI | GCGC | 5 cut(s) | 9, 98, 291, 396, 424 |
| HaeII | RGCGCY | 3 cut(s) | 11, 100, 293 |
| HaeIII | GGCC | 1 cut(s) | 72 |
| HhaI | GCGC | 5 cut(s) | 10, 99, 292, 397, 425 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 2 cut(s) | 149, 323 |
| Hin6I | GCGC | 5 cut(s) | 8, 97, 290, 395, 423 |
| HinP1I | GCGC | 5 cut(s) | 8, 97, 290, 395, 423 |
| HinfI | GANTC | 1 cut(s) | 310 |
| HphI | GGTGA | 3 cut(s) | 104, 200, 265 |
| Hpy188I | TCNGA | 1 cut(s) | 276 |
| Hpy188III | TCNNGA | 1 cut(s) | 83 |
| HpyAV | CCTTC | 2 cut(s) | 7, 28 |
| HpyCH4III | ACNGT | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 2 cut(s) | 145, 413 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 392 |
| HpyF3I | CTNAG | 1 cut(s) | 275 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 2 cut(s) | 149, 323 |
| HspAI | GCGC | 5 cut(s) | 8, 97, 290, 395, 423 |
| KasI | GGCGCC | 1 cut(s) | 7 |
| KflI | GGGWCCC | 1 cut(s) | 152 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| LpnPI | CCDG | 7 cut(s) | 12, 39, 40, 54, 142, 169, 225 |
| LweI | GCATC | 1 cut(s) | 165 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MboII | GAAGA | 2 cut(s) | 254, 371 |
| MhlI | GDGCHC | 1 cut(s) | 308 |
| MluCI | AATT | 6 cut(s) | 42, 110, 138, 377, 400, 429 |
| Mly113I | GGCGCC | 1 cut(s) | 8 |
| MlyI | GAGTC | 1 cut(s) | 304 |
| MnlI | CCTC | 6 cut(s) | 115, 249, 270, 276, 355, 376 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 2 cut(s) | 27, 157 |
| MvaI | CCWGG | 2 cut(s) | 27, 157 |
| MvnI | CGCG | 2 cut(s) | 395, 423 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 392 |
| NarI | GGCGCC | 1 cut(s) | 8 |
| NlaIII | CATG | 2 cut(s) | 149, 323 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 153, 154, 366 |
| NspI | RCATGY | 1 cut(s) | 323 |
| OliI | CACNNNNGTG | 1 cut(s) | 299 |
| PceI | AGGCCT | 1 cut(s) | 72 |
| PleI | GAGTC | 1 cut(s) | 304 |
| PluTI | GGCGCC | 1 cut(s) | 11 |
| PpsI | GAGTC | 1 cut(s) | 304 |
| PpuMI | RGGWCCY | 1 cut(s) | 152 |
| PshAI | GACNNNNGTC | 1 cut(s) | 245 |
| Psp5II | RGGWCCY | 1 cut(s) | 152 |
| Psp6I | CCWGG | 2 cut(s) | 25, 155 |
| PspGI | CCWGG | 2 cut(s) | 25, 155 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 153, 154, 366 |
| PspPI | GGNCC | 1 cut(s) | 152 |
| PspPPI | RGGWCCY | 1 cut(s) | 152 |
| RsaI | GTAC | 3 cut(s) | 40, 436, 451 |
| RsaNI | GTAC | 3 cut(s) | 39, 435, 450 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| Sau96I | GGNCC | 1 cut(s) | 152 |
| SchI | GAGTC | 1 cut(s) | 304 |
| ScrFI | CCNGG | 2 cut(s) | 27, 157 |
| SduI | GDGCHC | 1 cut(s) | 308 |
| SetI | ASST | 1 cut(s) | 94 |
| SfaNI | GCATC | 1 cut(s) | 165 |
| SfoI | GGCGCC | 1 cut(s) | 9 |
| SinI | GGWCC | 1 cut(s) | 152 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| Sse9I | AATT | 6 cut(s) | 42, 110, 138, 377, 400, 429 |
| SseBI | AGGCCT | 1 cut(s) | 72 |
| SsiI | CCGC | 1 cut(s) | 393 |
| SspDI | GGCGCC | 1 cut(s) | 7 |
| SspMI | CTAG | 1 cut(s) | 314 |
| StuI | AGGCCT | 1 cut(s) | 72 |
| StyD4I | CCNGG | 2 cut(s) | 25, 155 |
| TaaI | ACNGT | 1 cut(s) | 220 |
| TaqI | TCGA | 2 cut(s) | 136, 381 |
| TasI | AATT | 6 cut(s) | 42, 110, 138, 377, 400, 429 |
| VpaK11BI | GGWCC | 1 cut(s) | 152 |
| XapI | RAATTY | 3 cut(s) | 138, 377, 400 |
| XceI | RCATGY | 1 cut(s) | 323 |
| XspI | CTAG | 1 cut(s) | 314 |