Rmu_sc0000706.1_g000038

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0000049
Physical Location & Seq
Reverse (-)
150632 .. 152110
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000706.1_g000038.1.cds

Sequence Viewer

Length: 1404 bp
atggcacagactcctactggtactatggctgttcgtcctccttctgattccgcaagggtctctttgggcgaggcggggcaggcagccttgcatgacaataactggtatatggttgggcgactgctagggtcaaagtcgcggtttcctgggttcaagggcaccattgcttcgatttggtgtctcaagtccggcctctttgttcatgatgccggggatcgattccttttccaattcactcatgaagctgatcataatagagcgctgcatggagggccgtggttctataggaacatgatgttgttgggtttgccattggcacttagcaacaagcatgccttaaccctaattggatatgcggttggtcaggttattcgatttgatcaatcggctcttcgtaggaaggaggaggagcagaggatccggttggcgttggatacgcgtcggagggtgcgtacttggatgctatttgagttctctcccacgttgcagcctgagattactctcatttatgagaaagttaagggattctgtagggactgcggtttatttgaacatgaggcctcagggtgtgatggttttttgctgaaagagaaggcagagattcagaatgggcctccagaagaggcaatggccgggttgtcattggaagtgggtgtgctccctctgcaaccaatgctagctcctatgatggagcagatgccttttgctgaggttgggggaatggttataaagttggaggcgcaacaggatggtaggttgcatggttcccatttgttgggaatggtggtagcccatgcgtcacaatgtagtgacgtgctacatggtttcaagattgatggaagtacaatatgtgcatccttaggtttgattgagaataatggtgtcggctggttcaagaattggcagaagctagtcccagatggtgctacgtcaaccatactgccaaccaacgttttggccaaagtgaagaaaggccttctgaagcggggggttgatttgggttcgactagtttggttgctgctggtaccaagagaaaagtgagctatgatttgctcaatgcgggtaagaagatgttgttgcttccagctcttgctcttagagtggatgaaaatatagctttggtgttacaacataagaatgggcagattataatctcgccaaagaaaaagaagaagttgggtcgtcctcgaggtagtaagaataagccgaaggctgccaggactttggatccggagttgcatgagaggaaatctcgcaaatggaagagtcatattgactctggtgttgtgaatgagtccgcagatagcctgtccaaggaagcggttattgctaaggctgaggcattggatacaaaaggtagaatggaagaggaggctgcttctcctcttctggatgttatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

467

Amino Acids

51.29

Weight (kDa)

9.42

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 728, 1151
AbsI CCTCGAGG 1 cut(s) 1188
Acc65I GGTACC 1 cut(s) 1025
AccB1I GGYRCC 2 cut(s) 158, 1025
AccB7I CCANNNNNTGG 1 cut(s) 775
AccII CGCG 2 cut(s) 139, 439
AccIII TCCGGA 1 cut(s) 1231
AciI CCGC 9 cut(s) 51, 74, 139, 356, 540, 985, 1061, 1299, 1322
AclI AACGTT 1 cut(s) 951
AclWI GGATC 5 cut(s) 222, 412, 425, 1223, 1236
AcoI YGGCCR 2 cut(s) 630, 957
AcuI CTGAAG 1 cut(s) 1001
AfaI GTAC 4 cut(s) 22, 454, 844, 1027
AfeI AGCGCT 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 775, 1315
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 154, 551, 829, 895
AhlI ACTAGT 1 cut(s) 1007
AjiI CACGTC 1 cut(s) 814
AjnI CCWGG 2 cut(s) 145, 1217
AluBI AGCT 6 cut(s) 245, 680, 910, 1044, 1088, 1118
AluI AGCT 6 cut(s) 245, 680, 910, 1044, 1088, 1118
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 2 cut(s) 64, 185
AlwI GGATC 5 cut(s) 222, 412, 425, 1223, 1236
Ama87I CYCGRG 1 cut(s) 1188
Aor13HI TCCGGA 1 cut(s) 1231
Aor51HI AGCGCT 1 cut(s) 261
AoxI GGCC 7 cut(s) 190, 272, 558, 611, 630, 957, 973
ApeKI GCWGC 6 cut(s) 83, 262, 487, 1019, 1214, 1376
Asp718I GGTACC 1 cut(s) 1025
AspLEI GCGC 2 cut(s) 262, 742
AspS9I GGNCC 2 cut(s) 272, 611
AsuC2I CCSGG 2 cut(s) 211, 634
AsuNHI GCTAGC 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 1188
AxyI CCTNAGG 2 cut(s) 562, 859
BaeGI GKGCMC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 959
BamHI GGATCC 2 cut(s) 417, 1228
BanI GGYRCC 2 cut(s) 158, 1025
Bbv12I GWGCWC 1 cut(s) 660
BbvCI CCTCAGC 2 cut(s) 708, 1338
BbvI GCAGC 6 cut(s) 95, 249, 499, 1006, 1201, 1363
BccI CCATC 5 cut(s) 566, 682, 743, 830, 914
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 147, 1219
BciVI GTATCC 2 cut(s) 427, 1342
BclI TGATCA 2 cut(s) 247, 379
BcnI CCSGG 2 cut(s) 211, 634
BcoDI GTCTC 2 cut(s) 64, 185
BcuI ACTAGT 1 cut(s) 1007
BfaI CTAG 4 cut(s) 125, 677, 911, 1008
BfmI CTRYAG 2 cut(s) 283, 529
BfoI RGCGCY 1 cut(s) 263
BfuI GTATCC 2 cut(s) 427, 1342
BisI GCNGC 6 cut(s) 84, 263, 488, 1020, 1215, 1377
BlsI GCNGC 6 cut(s) 85, 264, 489, 1021, 1216, 1378
Bme1390I CCNGG 4 cut(s) 147, 211, 634, 1219
BmeT110I CYCGRG 1 cut(s) 1188
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 272, 611
BmiI GGNNCC 5 cut(s) 160, 419, 766, 1027, 1230
BmrFI CCNGG 4 cut(s) 147, 211, 634, 1219
BmsI GCATC 4 cut(s) 196, 450, 687, 863
BmtI GCTAGC 1 cut(s) 680
BplI GAGNNNNNCTC 2 cut(s) 1237, 1269
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 3 cut(s) 708, 1332, 1338
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 211, 634
Bsa29I ATCGAT 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 146, 210, 275, 1314
BsaWI WCCGGW 2 cut(s) 420, 1231
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 1315
Bse1I ACTGG 2 cut(s) 22, 107
Bse21I CCTNAGG 2 cut(s) 562, 859
Bse3DI GCAATG 2 cut(s) 162, 633
Bse8I GATNNNNATC 1 cut(s) 1151
BseAI TCCGGA 1 cut(s) 1231
BseBI CCWGG 2 cut(s) 147, 1219
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 4 cut(s) 146, 210, 275, 1314
BseGI GGATG 5 cut(s) 465, 754, 854, 1111, 1399
BseJI GATNNNNATC 1 cut(s) 1151
BseLI CCNNNNNNNGG 2 cut(s) 775, 1315
BseMI GCAATG 2 cut(s) 162, 633
BseMII CTCAG 4 cut(s) 483, 576, 699, 1329
BseNI ACTGG 2 cut(s) 22, 107
BseRI GAGGAG 4 cut(s) 419, 422, 1374, 1385
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 6 cut(s) 95, 249, 499, 1006, 1201, 1363
Bsh1236I CGCG 2 cut(s) 139, 439
BshFI GGCC 7 cut(s) 192, 274, 560, 613, 632, 959, 975
BshNI GGYRCC 2 cut(s) 158, 1025
BshVI ATCGAT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 1188
BsiSI CCGG 5 cut(s) 189, 210, 421, 633, 1232
BslFI GGGAC 2 cut(s) 548, 899
BslI CCNNNNNNNGG 2 cut(s) 775, 1315
BsmAI GTCTC 2 cut(s) 64, 185
BsmFI GGGAC 2 cut(s) 548, 899
BsnI GGCC 7 cut(s) 192, 274, 560, 613, 632, 959, 975
Bso31I GGTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 1188
Bsp1286I GDGCHC 2 cut(s) 161, 660
Bsp13I TCCGGA 1 cut(s) 1231
Bsp143I GATC 5 cut(s) 214, 247, 379, 417, 1228
BspACI CCGC 9 cut(s) 51, 74, 139, 356, 540, 985, 1061, 1299, 1322
BspANI GGCC 7 cut(s) 192, 274, 560, 613, 632, 959, 975
BspCNI CTCAG 4 cut(s) 484, 575, 700, 1330
BspDI ATCGAT 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 1231
BspFNI CGCG 2 cut(s) 139, 439
BspHI TCATGA 2 cut(s) 202, 238
BspLI GGNNCC 5 cut(s) 160, 419, 766, 1027, 1230
BspOI GCTAGC 1 cut(s) 680
BspPI GGATC 5 cut(s) 222, 412, 425, 1223, 1236
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 158, 1025
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 162, 633
BsrI ACTGG 2 cut(s) 22, 107
BssECI CCNNGG 4 cut(s) 146, 210, 275, 1314
BssMI GATC 5 cut(s) 214, 247, 379, 417, 1228
BssT1I CCWWGG 1 cut(s) 1314
Bst2UI CCWGG 2 cut(s) 147, 1219
Bst6I CTCTTC 5 cut(s) 396, 615, 1259, 1362, 1392
BstAPI GCANNNNNTGC 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 81, 333, 678
BstDEI CTNAG 8 cut(s) 320, 492, 562, 708, 859, 1097, 1332, 1338
BstDSI CCRYGG 1 cut(s) 275
BstENI CCTNNNNNAGG 1 cut(s) 1313
BstF5I GGATG 5 cut(s) 465, 754, 854, 1111, 1399
BstFNI CGCG 2 cut(s) 139, 439
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 2 cut(s) 262, 742
BstKTI GATC 5 cut(s) 217, 250, 382, 420, 1231
BstMAI GTCTC 2 cut(s) 64, 185
BstMBI GATC 5 cut(s) 214, 247, 379, 417, 1228
BstMWI GCNNNNNNNGC 5 cut(s) 80, 271, 664, 673, 1328
BstNI CCWGG 2 cut(s) 147, 1219
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 145, 209, 632, 1217
BstSFI CTRYAG 2 cut(s) 283, 529
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 2 cut(s) 139, 439
BstV1I GCAGC 6 cut(s) 95, 249, 499, 1006, 1201, 1363
BstX2I RGATCY 2 cut(s) 417, 1228
BstXI CCANNNNNNTGG 2 cut(s) 955, 1225
BstYI RGATCY 2 cut(s) 417, 1228
Bsu15I ATCGAT 1 cut(s) 217
Bsu36I CCTNAGG 2 cut(s) 562, 859
BsuI GTATCC 2 cut(s) 427, 1342
BsuRI GGCC 7 cut(s) 192, 274, 560, 613, 632, 959, 975
BsuTUI ATCGAT 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 275
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 5 cut(s) 465, 754, 854, 1111, 1399
Cac8I GCNNGC 3 cut(s) 81, 333, 678
CciI TCATGA 2 cut(s) 202, 238
CfoI GCGC 2 cut(s) 262, 742
Cfr13I GGNCC 2 cut(s) 272, 611
ClaI ATCGAT 1 cut(s) 217
CseI GACGC 2 cut(s) 428, 786
Csp6I GTAC 4 cut(s) 21, 453, 843, 1026
CviQI GTAC 4 cut(s) 21, 453, 843, 1026
DdeI CTNAG 8 cut(s) 320, 492, 562, 708, 859, 1097, 1332, 1338
DpnI GATC 5 cut(s) 216, 249, 381, 419, 1230
DpnII GATC 5 cut(s) 214, 247, 379, 417, 1228
EaeI YGGCCR 2 cut(s) 630, 957
Eam1104I CTCTTC 5 cut(s) 396, 615, 1259, 1362, 1392
EarI CTCTTC 5 cut(s) 396, 615, 1259, 1362, 1392
Eco130I CCWWGG 1 cut(s) 1314
Eco147I AGGCCT 2 cut(s) 560, 975
Eco31I GGTCTC 1 cut(s) 64
Eco47III AGCGCT 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 1001
Eco81I CCTNAGG 2 cut(s) 562, 859
Eco88I CYCGRG 1 cut(s) 1188
EcoNI CCTNNNNNAGG 1 cut(s) 1313
EcoRII CCWGG 2 cut(s) 145, 1217
EcoT14I CCWWGG 1 cut(s) 1314
ErhI CCWWGG 1 cut(s) 1314
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 320, 352
FaqI GGGAC 2 cut(s) 548, 899
FauI CCCGC 3 cut(s) 67, 978, 1054
FbaI TGATCA 2 cut(s) 247, 379
Fnu4HI GCNGC 6 cut(s) 84, 263, 488, 1020, 1215, 1377
FokI GGATG 4 cut(s) 472, 761, 841, 1118
Fsp4HI GCNGC 6 cut(s) 84, 263, 488, 1020, 1215, 1377
FspBI CTAG 4 cut(s) 125, 677, 911, 1008
GlaI GCGC 2 cut(s) 261, 741
GluI GCNGC 6 cut(s) 84, 263, 488, 1020, 1215, 1377
GsuI CTGGAG 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 7 cut(s) 192, 274, 560, 613, 632, 959, 975
HapII CCGG 5 cut(s) 189, 210, 421, 633, 1232
HgaI GACGC 2 cut(s) 428, 786
HhaI GCGC 2 cut(s) 262, 742
Hin6I GCGC 2 cut(s) 260, 740
HinP1I GCGC 2 cut(s) 260, 740
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 8 cut(s) 10, 47, 219, 525, 601, 1267, 1277, 1295
HpaII CCGG 5 cut(s) 189, 210, 421, 633, 1232
Hpy166II GTNNAC 1 cut(s) 933
Hpy188I TCNGA 4 cut(s) 46, 444, 606, 981
Hpy188III TCNNGA 7 cut(s) 203, 239, 617, 829, 895, 1232, 1391
Hpy8I GTNNAC 1 cut(s) 933
Hpy99I CGWCG 1 cut(s) 444
HpyAV CCTTC 5 cut(s) 51, 394, 586, 986, 1204
HpyCH4IV ACGT 4 cut(s) 482, 813, 929, 951
HpyCH4V TGCA 7 cut(s) 91, 265, 487, 667, 760, 854, 1240
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 271, 664, 673, 1328
HpyF3I CTNAG 8 cut(s) 320, 492, 562, 708, 859, 1097, 1332, 1338
HpySE526I ACGT 4 cut(s) 482, 813, 929, 951
HspAI GCGC 2 cut(s) 260, 740
Kpn2I TCCGGA 1 cut(s) 1231
KpnI GGTACC 1 cut(s) 1029
Ksp22I TGATCA 2 cut(s) 247, 379
Kzo9I GATC 5 cut(s) 214, 247, 379, 417, 1228
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 409, 663, 685, 691
Lsp1109I GCAGC 6 cut(s) 95, 249, 499, 1006, 1201, 1363
LweI GCATC 4 cut(s) 196, 450, 687, 863
MaeI CTAG 4 cut(s) 125, 677, 911, 1008
MaeII ACGT 4 cut(s) 482, 813, 929, 951
MaeIII GTNAC 3 cut(s) 798, 809, 1125
MalI GATC 5 cut(s) 216, 249, 381, 419, 1230
MboI GATC 5 cut(s) 214, 247, 379, 417, 1228
MboII GAAGA 8 cut(s) 383, 632, 979, 1081, 1183, 1276, 1379, 1379
MflI RGATCY 2 cut(s) 417, 1228
MhlI GDGCHC 2 cut(s) 161, 660
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 3 cut(s) 230, 345, 898
MluI ACGCGT 1 cut(s) 437
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 4 cut(s) 4, 1271, 1276, 1304
MmeI TCCRAC 3 cut(s) 411, 422, 714
Mox20I TGGCCA 1 cut(s) 959
MroI TCCGGA 1 cut(s) 1231
MscI TGGCCA 1 cut(s) 959
MseI TTAA 3 cut(s) 338, 519, 1402
MslI CAYNNNNRTG 1 cut(s) 1137
Msp20I TGGCCA 1 cut(s) 959
MspI CCGG 5 cut(s) 189, 210, 421, 633, 1232
MspR9I CCNGG 4 cut(s) 147, 211, 634, 1219
MvaI CCWGG 2 cut(s) 147, 1219
MvnI CGCG 2 cut(s) 139, 439
MwoI GCNNNNNNNGC 5 cut(s) 80, 271, 664, 673, 1328
NciI CCSGG 2 cut(s) 211, 634
NdeII GATC 5 cut(s) 214, 247, 379, 417, 1228
NheI GCTAGC 1 cut(s) 676
NlaIV GGNNCC 5 cut(s) 160, 419, 766, 1027, 1230
NmuCI GTSAC 2 cut(s) 798, 809
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 1188
PagI TCATGA 2 cut(s) 202, 238
PceI AGGCCT 2 cut(s) 560, 975
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PfeI GAWTC 4 cut(s) 47, 219, 525, 601
PflMI CCANNNNNTGG 1 cut(s) 775
PkrI GCNGC 6 cut(s) 85, 264, 489, 1021, 1216, 1378
PleI GAGTC 4 cut(s) 4, 1271, 1275, 1303
PpsI GAGTC 4 cut(s) 4, 1271, 1275, 1303
PsiI TTATAA 2 cut(s) 728, 1151
Psp1406I AACGTT 1 cut(s) 951
Psp6I CCWGG 2 cut(s) 145, 1217
PspGI CCWGG 2 cut(s) 145, 1217
PspN4I GGNNCC 5 cut(s) 160, 419, 766, 1027, 1230
PspPI GGNCC 2 cut(s) 272, 611
PspXI VCTCGAGB 1 cut(s) 1188
PsuI RGATCY 2 cut(s) 417, 1228
RsaI GTAC 4 cut(s) 22, 454, 844, 1027
RsaNI GTAC 4 cut(s) 21, 453, 843, 1026
RseI CAYNNNNRTG 1 cut(s) 1137
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 3 cut(s) 338, 519, 1402
SatI GCNGC 6 cut(s) 84, 263, 488, 1020, 1215, 1377
Sau3AI GATC 5 cut(s) 214, 247, 379, 417, 1228
Sau96I GGNCC 2 cut(s) 272, 611
SchI GAGTC 4 cut(s) 4, 1271, 1276, 1304
ScrFI CCNGG 4 cut(s) 147, 211, 634, 1219
SduI GDGCHC 2 cut(s) 161, 660
SfaNI GCATC 4 cut(s) 196, 450, 687, 863
SfcI CTRYAG 2 cut(s) 283, 529
Sfr274I CTCGAG 1 cut(s) 1188
SlaI CTCGAG 1 cut(s) 1188
SmiMI CAYNNNNRTG 1 cut(s) 1137
SmlI CTYRAG 2 cut(s) 182, 1188
SmoI CTYRAG 2 cut(s) 182, 1188
SpeI ACTAGT 1 cut(s) 1007
SphI GCATGC 1 cut(s) 335
Sse9I AATT 3 cut(s) 230, 345, 898
SseBI AGGCCT 2 cut(s) 560, 975
SsiI CCGC 9 cut(s) 51, 74, 139, 356, 540, 985, 1061, 1299, 1322
SspMI CTAG 4 cut(s) 125, 677, 911, 1008
StuI AGGCCT 2 cut(s) 560, 975
StyD4I CCNGG 4 cut(s) 145, 209, 632, 1217
StyI CCWWGG 1 cut(s) 1314
TaiI ACGT 4 cut(s) 485, 816, 932, 954
TaqI TCGA 5 cut(s) 170, 217, 373, 1004, 1189
TasI AATT 3 cut(s) 230, 345, 898
TatI WGTACW 1 cut(s) 842
TfiI GAWTC 4 cut(s) 47, 219, 525, 601
Tru1I TTAA 3 cut(s) 338, 519, 1402
Tru9I TTAA 3 cut(s) 338, 519, 1402
TseFI GTSAC 2 cut(s) 798, 809
TseI GCWGC 6 cut(s) 83, 262, 487, 1019, 1214, 1376
Tsp45I GTSAC 2 cut(s) 798, 809
TspDTI ATGAA 3 cut(s) 191, 255, 1122
Van91I CCANNNNNTGG 1 cut(s) 775
XagI CCTNNNNNAGG 1 cut(s) 1313
XceI RCATGY 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 1188
XspI CTAG 4 cut(s) 125, 677, 911, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.