Rmu_sc0008044.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008044.1
OG0000049
Physical Location & Seq
Forward (+)
52298 .. 53767
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008044.1_g000008.1.cds

Sequence Viewer

Length: 1470 bp
atggctgacatccgtgttgaggctgaggaagcagggctactgagggattcaagcctcgtggagttgggggctgcaggggctgcagcgttgcaggatgggaattggtatatggtgggccgtttgttggcaccgaaagcaaggttgcccggcttcaagggtactatttccacgatctggaatatcagatcagggctaaccattcaggatgctggggagcgctttgttttccaatttgataatgagggtgtgcggaaccggatcttgcgtggaggtccctggttttatcggaatactatgctggtggtgggagaatatgatggcctcagtcgggtggaggaggtgcctttaactctgttggaggcctgggtggctgtgaagggacttcctattgctctgaggaacaagacggcgttggctatggtgggtgcatctttagggatgatggttcgagtggatcacaacgctttgaagaggaaagaagaagaacagcgcatcaaggtggtgtttgatgttcgtcatcggatccgggtctggaaagtgtttgagttttcaccggtggtgagaccggaattatcttttatcttcgagaaggttaaaggtttttgccgggactgtggactctttattcatgatgccacgggttgtgacaaggtcttaatccgagagaaggaggaaatccactctagaccgactgcagtagccatggcagggctatctttgacctcggggacagagactggtcttttcttgaaggacaagtctctgaggttaaataacgccgatctggaggttgggttggggtctgttggacaaagggccggtgtggtagctgatggaaagtacgatcatgcaccgtcgacaactgttgagttcatgtcctccatgttgtctggaatacctagggttttggaaccggtgatccataccatggggaaattacagctgaggacgccactgatggttgctccggcggagatcgcctcggagtctgcagctttgatccctaggttatctgcgacaggtgacgagggttcaaggatggagttttcttccatgcaattgatcccggcggggagaaaaagaaaggctgcattttacttggatcaccttgggaagaagtacttaacttttccagagtcgaagctggaggttggggagaatgtttctttgattgtccaacataagaatggcaagcttctggtctcaccaaagaagaagaaaggtggacgtcctaagggaagcaaaaataaggttaagaatgcagctgaacaggaagtgaagaagatacgtaagtataagcgtagagggaaagctttgaaatttgattcctcaaatgaagcgttggctactgctactggggaggagcaagggactatacagatggggactgttgaggttgtgaaggaaccccctgttatggagggagagctggaaggtgccgggtcacctgctaggattagtttaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

489

Amino Acids

53.66

Weight (kDa)

9.54

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1456
AatII GACGTC 1 cut(s) 1231
Acc36I ACCTGC 1 cut(s) 1456
AccB1I GGYRCC 3 cut(s) 127, 340, 1436
AccB7I CCANNNNNTGG 2 cut(s) 174, 928
AccI GTMKAC 1 cut(s) 857
AciI CCGC 3 cut(s) 250, 971, 1070
AclWI GGATC 8 cut(s) 266, 462, 517, 530, 913, 994, 1057, 1110
AcsI RAATTY 1 cut(s) 1319
AcyI GRCGYC 2 cut(s) 950, 1228
AfaI GTAC 3 cut(s) 160, 842, 1121
AfeI AGCGCT 1 cut(s) 218
AfiI CCNNNNNNNGG 8 cut(s) 19, 124, 174, 328, 667, 708, 928, 1417
AgeI ACCGGT 2 cut(s) 553, 913
AgsI TTSAA 6 cut(s) 51, 154, 469, 751, 1035, 1318
AjnI CCWGG 2 cut(s) 275, 362
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
AluBI AGCT 8 cut(s) 830, 943, 995, 1144, 1195, 1265, 1313, 1429
AluI AGCT 8 cut(s) 830, 943, 995, 1144, 1195, 1265, 1313, 1429
Alw26I GTCTC 4 cut(s) 556, 728, 765, 1207
AlwI GGATC 8 cut(s) 266, 462, 517, 530, 913, 994, 1057, 1110
AlwNI CAGNNNCTG 2 cut(s) 80, 737
Ama87I CYCGRG 1 cut(s) 724
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 4 cut(s) 115, 319, 360, 816
ApeKI GCWGC 6 cut(s) 71, 80, 83, 992, 1088, 1262
ApoI RAATTY 1 cut(s) 1319
AsiGI ACCGGT 2 cut(s) 553, 913
AspA2I CCTAGG 2 cut(s) 899, 1004
AspLEI GCGC 2 cut(s) 219, 492
AspS9I GGNCC 3 cut(s) 115, 272, 816
AsuC2I CCSGG 5 cut(s) 147, 527, 608, 1067, 1441
AsuHPI GGTGA 7 cut(s) 543, 571, 928, 1034, 1097, 1197, 1437
AvaI CYCGRG 1 cut(s) 724
AvaII GGWCC 1 cut(s) 272
AvrII CCTAGG 2 cut(s) 899, 1004
AxyI CCTNAGG 1 cut(s) 1233
BaeI ACNNNNGTAYC 2 cut(s) 1277, 1310
BamHI GGATCC 1 cut(s) 522
BanI GGYRCC 3 cut(s) 127, 340, 1436
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BauI CACGAG 1 cut(s) 56
BbvCI CCTCAGC 2 cut(s) 24, 944
BbvI GCAGC 6 cut(s) 58, 67, 95, 1004, 1075, 1274
BccI CCATC 7 cut(s) 89, 311, 436, 827, 952, 1033, 1375
BceAI ACGGC 2 cut(s) 102, 423
BciT130I CCWGG 2 cut(s) 277, 364
BcnI CCSGG 5 cut(s) 147, 527, 608, 1067, 1441
BcoDI GTCTC 4 cut(s) 556, 728, 765, 1207
BfaI CTAG 4 cut(s) 684, 900, 1005, 1452
BfmI CTRYAG 4 cut(s) 72, 81, 693, 990
BfoI RGCGCY 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 1456
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 6 cut(s) 72, 81, 84, 993, 1089, 1263
BlnI CCTAGG 2 cut(s) 899, 1004
BlsI GCNGC 6 cut(s) 73, 82, 85, 994, 1090, 1264
BmcAI AGTACT 1 cut(s) 1121
Bme1390I CCNGG 7 cut(s) 147, 277, 364, 527, 608, 1067, 1441
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 115, 272, 816
BmiI GGNNCC 8 cut(s) 129, 254, 274, 342, 524, 912, 1407, 1438
BmrFI CCNGG 7 cut(s) 147, 277, 364, 527, 608, 1067, 1441
BmrI ACTGGG 1 cut(s) 1365
BmsI GCATC 4 cut(s) 196, 437, 501, 622
BmuI ACTGGG 1 cut(s) 1365
BplI GAGNNNNNCTC 2 cut(s) 965, 997
BpmI CTGGAG 2 cut(s) 806, 1166
Bpu10I CCTNAGC 2 cut(s) 24, 944
BpuMI CCSGG 5 cut(s) 147, 527, 608, 1067, 1441
BsaAI YACGTR 1 cut(s) 1289
BsaHI GRCGYC 2 cut(s) 950, 1228
BsaI GGTCTC 2 cut(s) 556, 1207
BsaWI WCCGGW 4 cut(s) 255, 553, 565, 913
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 8 cut(s) 19, 124, 174, 328, 667, 708, 928, 1417
Bse118I RCCGGY 3 cut(s) 553, 818, 913
Bse1I ACTGG 2 cut(s) 742, 1360
Bse21I CCTNAGG 1 cut(s) 1233
BseBI CCWGG 2 cut(s) 277, 364
BseGI GGATG 5 cut(s) 9, 100, 211, 444, 1044
BseLI CCNNNNNNNGG 8 cut(s) 19, 124, 174, 328, 667, 708, 928, 1417
BseMII CTCAG 6 cut(s) 15, 32, 337, 386, 755, 935
BseNI ACTGG 2 cut(s) 742, 1360
BseRI GAGGAG 2 cut(s) 350, 1376
BseXI GCAGC 6 cut(s) 58, 67, 95, 1004, 1075, 1274
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 4 cut(s) 117, 321, 362, 818
BshNI GGYRCC 3 cut(s) 127, 340, 1436
BshTI ACCGGT 2 cut(s) 553, 913
BsiHKCI CYCGRG 1 cut(s) 724
BslFI GGGAC 6 cut(s) 258, 393, 623, 742, 1384, 1399
BslI CCNNNNNNNGG 8 cut(s) 19, 124, 174, 328, 667, 708, 928, 1417
BsmAI GTCTC 4 cut(s) 556, 728, 765, 1207
BsmFI GGGAC 6 cut(s) 258, 393, 623, 742, 1384, 1399
BsmI GAATGC 1 cut(s) 1264
BsnI GGCC 4 cut(s) 117, 321, 362, 818
Bso31I GGTCTC 2 cut(s) 556, 1207
BsoBI CYCGRG 1 cut(s) 724
Bsp19I CCATGG 2 cut(s) 702, 927
BspACI CCGC 3 cut(s) 250, 971, 1070
BspANI GGCC 4 cut(s) 117, 321, 362, 818
BspCNI CTCAG 6 cut(s) 16, 33, 336, 387, 756, 936
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 8 cut(s) 129, 254, 274, 342, 524, 912, 1407, 1438
BspMAI CTGCAG 4 cut(s) 76, 85, 697, 994
BspMI ACCTGC 1 cut(s) 1456
BspPI GGATC 8 cut(s) 266, 462, 517, 530, 913, 994, 1057, 1110
BspT107I GGYRCC 3 cut(s) 127, 340, 1436
BspTNI GGTCTC 2 cut(s) 556, 1207
BsrFI RCCGGY 3 cut(s) 553, 818, 913
BsrI ACTGG 2 cut(s) 742, 1360
BssAI RCCGGY 3 cut(s) 553, 818, 913
BssNI GRCGYC 2 cut(s) 950, 1228
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 5 cut(s) 702, 899, 927, 1004, 1108
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 277, 364
Bst4CI ACNGT 4 cut(s) 614, 855, 865, 1390
Bst6I CTCTTC 1 cut(s) 464
BstACI GRCGYC 2 cut(s) 950, 1228
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBAI YACGTR 1 cut(s) 1289
BstC8I GCNNGC 1 cut(s) 1193
BstDEI CTNAG 7 cut(s) 24, 41, 323, 395, 764, 944, 1233
BstDSI CCRYGG 3 cut(s) 636, 702, 927
BstEII GGTNACC 1 cut(s) 1443
BstF5I GGATG 5 cut(s) 9, 100, 211, 444, 1044
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 2 cut(s) 219, 492
BstMAI GTCTC 4 cut(s) 556, 728, 765, 1207
BstMWI GCNNNNNNNGC 7 cut(s) 29, 77, 80, 134, 368, 949, 977
BstNI CCWGG 2 cut(s) 277, 364
BstPI GGTNACC 1 cut(s) 1443
BstSCI CCNGG 7 cut(s) 145, 275, 362, 525, 606, 1065, 1439
BstSFI CTRYAG 4 cut(s) 72, 81, 693, 990
BstSNI TACGTA 1 cut(s) 1289
BstV1I GCAGC 6 cut(s) 58, 67, 95, 1004, 1075, 1274
BstX2I RGATCY 2 cut(s) 258, 522
BstYI RGATCY 2 cut(s) 258, 522
Bsu36I CCTNAGG 1 cut(s) 1233
BsuRI GGCC 4 cut(s) 117, 321, 362, 818
BtgI CCRYGG 3 cut(s) 636, 702, 927
BtsCI GGATG 5 cut(s) 9, 100, 211, 444, 1044
BtsIMutI CAGTG 1 cut(s) 953
BveI ACCTGC 1 cut(s) 1456
Cac8I GCNNGC 1 cut(s) 1193
CaiI CAGNNNCTG 2 cut(s) 80, 737
CciI TCATGA 1 cut(s) 628
CfoI GCGC 2 cut(s) 219, 492
Cfr10I RCCGGY 3 cut(s) 553, 818, 913
Cfr13I GGNCC 3 cut(s) 115, 272, 816
CseI GACGC 1 cut(s) 958
Csp6I GTAC 3 cut(s) 159, 841, 1120
CspAI ACCGGT 2 cut(s) 553, 913
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 7 cut(s) 629, 703, 848, 874, 883, 928, 1054
CviQI GTAC 3 cut(s) 159, 841, 1120
DdeI CTNAG 7 cut(s) 24, 41, 323, 395, 764, 944, 1233
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
EciI GGCGGA 1 cut(s) 986
Eco105I TACGTA 1 cut(s) 1289
Eco130I CCWWGG 5 cut(s) 702, 899, 927, 1004, 1108
Eco147I AGGCCT 1 cut(s) 362
Eco31I GGTCTC 2 cut(s) 556, 1207
Eco47I GGWCC 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 218
Eco81I CCTNAGG 1 cut(s) 1233
Eco88I CYCGRG 1 cut(s) 724
Eco91I GGTNACC 1 cut(s) 1443
EcoO109I RGGNCCY 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 1443
EcoRII CCWGG 2 cut(s) 275, 362
EcoT14I CCWWGG 5 cut(s) 702, 899, 927, 1004, 1108
ErhI CCWWGG 5 cut(s) 702, 899, 927, 1004, 1108
FaeI CATG 7 cut(s) 632, 706, 851, 877, 886, 931, 1057
FalI AAGNNNNNCTT 2 cut(s) 1106, 1138
FaqI GGGAC 6 cut(s) 258, 393, 623, 742, 1384, 1399
FatI CATG 7 cut(s) 628, 702, 847, 873, 882, 927, 1053
FauI CCCGC 1 cut(s) 1063
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 6 cut(s) 72, 81, 84, 993, 1089, 1263
FokI GGATG 4 cut(s) 107, 218, 451, 1051
Fsp4HI GCNGC 6 cut(s) 72, 81, 84, 993, 1089, 1263
FspBI CTAG 4 cut(s) 684, 900, 1005, 1452
GlaI GCGC 2 cut(s) 218, 491
GluI GCNGC 6 cut(s) 72, 81, 84, 993, 1089, 1263
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 2 cut(s) 806, 1166
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 4 cut(s) 117, 321, 362, 818
HgaI GACGC 1 cut(s) 958
HhaI GCGC 2 cut(s) 219, 492
Hin1I GRCGYC 2 cut(s) 950, 1228
Hin1II CATG 7 cut(s) 632, 706, 851, 877, 886, 931, 1057
Hin6I GCGC 2 cut(s) 217, 490
HinP1I GCGC 2 cut(s) 217, 490
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HindIII AAGCTT 2 cut(s) 1193, 1311
HinfI GANTC 5 cut(s) 47, 618, 986, 1136, 1325
HphI GGTGA 7 cut(s) 543, 571, 928, 1034, 1097, 1197, 1437
Hpy166II GTNNAC 3 cut(s) 617, 858, 1226
Hpy188I TCNGA 7 cut(s) 185, 288, 396, 522, 662, 765, 985
Hpy8I GTNNAC 3 cut(s) 617, 858, 1226
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 6 cut(s) 370, 583, 661, 745, 1396, 1427
HpyCH4III ACNGT 4 cut(s) 614, 855, 865, 1390
HpyCH4IV ACGT 2 cut(s) 1228, 1288
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 77, 80, 134, 368, 949, 977
HpyF3I CTNAG 7 cut(s) 24, 41, 323, 395, 764, 944, 1233
HpySE526I ACGT 2 cut(s) 1228, 1288
Hsp92I GRCGYC 2 cut(s) 950, 1228
Hsp92II CATG 7 cut(s) 632, 706, 851, 877, 886, 931, 1057
HspAI GCGC 2 cut(s) 217, 490
LmnI GCTCC 3 cut(s) 214, 970, 1363
Lsp1109I GCAGC 6 cut(s) 58, 67, 95, 1004, 1075, 1274
LweI GCATC 4 cut(s) 196, 437, 501, 622
MaeI CTAG 4 cut(s) 684, 900, 1005, 1452
MaeII ACGT 2 cut(s) 1228, 1288
MaeIII GTNAC 3 cut(s) 644, 1022, 1443
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 2 cut(s) 258, 522
MluCI AATT 7 cut(s) 100, 230, 569, 935, 1058, 1319, 1464
MlyI GAGTC 3 cut(s) 612, 995, 1145
MmeI TCCRAC 3 cut(s) 336, 787, 1201
MseI TTAA 8 cut(s) 347, 594, 656, 770, 1124, 1254, 1463, 1468
MslI CAYNNNNRTG 2 cut(s) 497, 1185
MspA1I CMGCKG 2 cut(s) 943, 1265
MspR9I CCNGG 7 cut(s) 147, 277, 364, 527, 608, 1067, 1441
MunI CAATTG 1 cut(s) 1058
Mva1269I GAATGC 1 cut(s) 1264
MvaI CCWGG 2 cut(s) 277, 364
MwoI GCNNNNNNNGC 7 cut(s) 29, 77, 80, 134, 368, 949, 977
NciI CCSGG 5 cut(s) 147, 527, 608, 1067, 1441
NcoI CCATGG 2 cut(s) 702, 927
NlaIII CATG 7 cut(s) 632, 706, 851, 877, 886, 931, 1057
NlaIV GGNNCC 8 cut(s) 129, 254, 274, 342, 524, 912, 1407, 1438
NmuCI GTSAC 3 cut(s) 644, 1022, 1443
PagI TCATGA 1 cut(s) 628
PaqCI CACCTGC 1 cut(s) 1456
PceI AGGCCT 1 cut(s) 362
PctI GAATGC 1 cut(s) 1264
PfeI GAWTC 2 cut(s) 47, 1325
PflFI GACNNNGTC 1 cut(s) 650
PflMI CCANNNNNTGG 2 cut(s) 174, 928
PinAI ACCGGT 2 cut(s) 553, 913
PkrI GCNGC 6 cut(s) 73, 82, 85, 994, 1090, 1264
PleI GAGTC 3 cut(s) 612, 994, 1144
PpsI GAGTC 3 cut(s) 612, 994, 1144
Ppu21I YACGTR 1 cut(s) 1289
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 275, 362
PspEI GGTNACC 1 cut(s) 1443
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 275, 362
PspN4I GGNNCC 8 cut(s) 129, 254, 274, 342, 524, 912, 1407, 1438
PspPI GGNCC 3 cut(s) 115, 272, 816
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 4 cut(s) 76, 85, 697, 994
PstNI CAGNNNCTG 2 cut(s) 80, 737
PsuI RGATCY 2 cut(s) 258, 522
PsyI GACNNNGTC 1 cut(s) 650
PvuII CAGCTG 2 cut(s) 943, 1265
RsaI GTAC 3 cut(s) 160, 842, 1121
RsaNI GTAC 3 cut(s) 159, 841, 1120
RseI CAYNNNNRTG 2 cut(s) 497, 1185
SalI GTCGAC 1 cut(s) 856
SaqAI TTAA 8 cut(s) 347, 594, 656, 770, 1124, 1254, 1463, 1468
SatI GCNGC 6 cut(s) 72, 81, 84, 993, 1089, 1263
Sau96I GGNCC 3 cut(s) 115, 272, 816
ScaI AGTACT 1 cut(s) 1121
SchI GAGTC 3 cut(s) 612, 995, 1145
ScrFI CCNGG 7 cut(s) 147, 277, 364, 527, 608, 1067, 1441
SfaNI GCATC 4 cut(s) 196, 437, 501, 622
SfcI CTRYAG 4 cut(s) 72, 81, 693, 990
SgrAI CRCCGGYG 1 cut(s) 553
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 497, 1185
SnaBI TACGTA 1 cut(s) 1289
Sse9I AATT 7 cut(s) 100, 230, 569, 935, 1058, 1319, 1464
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 3 cut(s) 250, 971, 1070
SspMI CTAG 4 cut(s) 684, 900, 1005, 1452
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 7 cut(s) 145, 275, 362, 525, 606, 1065, 1439
StyI CCWWGG 5 cut(s) 702, 899, 927, 1004, 1108
TaaI ACNGT 4 cut(s) 614, 855, 865, 1390
TaiI ACGT 2 cut(s) 1231, 1291
TaqI TCGA 4 cut(s) 448, 585, 857, 1139
TaqII GACCGA 1 cut(s) 703
TasI AATT 7 cut(s) 100, 230, 569, 935, 1058, 1319, 1464
TatI WGTACW 1 cut(s) 1119
TfiI GAWTC 2 cut(s) 47, 1325
Tru1I TTAA 8 cut(s) 347, 594, 656, 770, 1124, 1254, 1463, 1468
Tru9I TTAA 8 cut(s) 347, 594, 656, 770, 1124, 1254, 1463, 1468
TscAI CASTG 1 cut(s) 960
TseFI GTSAC 3 cut(s) 644, 1022, 1443
TseI GCWGC 6 cut(s) 71, 80, 83, 992, 1088, 1262
Tsp45I GTSAC 3 cut(s) 644, 1022, 1443
TspDTI ATGAA 3 cut(s) 617, 862, 1350
TspRI CASTG 1 cut(s) 960
Tth111I GACNNNGTC 1 cut(s) 650
Van91I CCANNNNNTGG 2 cut(s) 174, 928
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 1319
XbaI TCTAGA 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 1184
XmaJI CCTAGG 2 cut(s) 899, 1004
XmiI GTMKAC 1 cut(s) 857
XspI CTAG 4 cut(s) 684, 900, 1005, 1452
ZraI GACGTC 1 cut(s) 1229
ZrmI AGTACT 1 cut(s) 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.