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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 359 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 122 |
| AciI | CCGC | 6 cut(s) | 4, 30, 191, 343, 376, 702 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 122, 680 |
| AgeI | ACCGGT | 1 cut(s) | 175 |
| AgsI | TTSAA | 8 cut(s) | 316, 340, 412, 430, 584, 638, 654, 725 |
| AluBI | AGCT | 4 cut(s) | 284, 305, 475, 577 |
| AluI | AGCT | 4 cut(s) | 284, 305, 475, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| Alw26I | GTCTC | 3 cut(s) | 270, 300, 338 |
| Ama87I | CYCGRG | 3 cut(s) | 297, 527, 675 |
| AoxI | GGCC | 5 cut(s) | 42, 58, 369, 377, 447 |
| ApaI | GGGCCC | 1 cut(s) | 46 |
| ApeKI | GCWGC | 1 cut(s) | 390 |
| AsiGI | ACCGGT | 1 cut(s) | 175 |
| AspLEI | GCGC | 1 cut(s) | 360 |
| AspS9I | GGNCC | 3 cut(s) | 42, 43, 58 |
| AsuC2I | CCSGG | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 3 cut(s) | 190, 607, 625 |
| AvaI | CYCGRG | 3 cut(s) | 297, 527, 675 |
| BaeGI | GKGCMC | 1 cut(s) | 46 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BbvI | GCAGC | 1 cut(s) | 402 |
| BccI | CCATC | 2 cut(s) | 116, 722 |
| BceAI | ACGGC | 1 cut(s) | 45 |
| BclI | TGATCA | 1 cut(s) | 628 |
| BcnI | CCSGG | 1 cut(s) | 57 |
| BcoDI | GTCTC | 3 cut(s) | 270, 300, 338 |
| BfaI | CTAG | 1 cut(s) | 306 |
| BglII | AGATCT | 1 cut(s) | 566 |
| BisI | GCNGC | 3 cut(s) | 344, 377, 391 |
| BlsI | GCNGC | 3 cut(s) | 345, 378, 392 |
| Bme1390I | CCNGG | 1 cut(s) | 57 |
| BmeT110I | CYCGRG | 3 cut(s) | 297, 527, 675 |
| BmgT120I | GGNCC | 3 cut(s) | 42, 43, 58 |
| BmiI | GGNNCC | 5 cut(s) | 44, 231, 456, 493, 525 |
| BmrFI | CCNGG | 1 cut(s) | 57 |
| BmsI | GCATC | 4 cut(s) | 58, 160, 345, 521 |
| BoxI | GACNNNNGTC | 1 cut(s) | 330 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 250, 282, 675, 707 |
| Bpu10I | CCTNAGC | 1 cut(s) | 285 |
| BpuEI | CTTGAG | 2 cut(s) | 146, 525 |
| BpuMI | CCSGG | 1 cut(s) | 57 |
| Bsa29I | ATCGAT | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 4 cut(s) | 186, 450, 486, 676 |
| BsaWI | WCCGGW | 2 cut(s) | 175, 610 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 122, 680 |
| Bse118I | RCCGGY | 1 cut(s) | 175 |
| Bse1I | ACTGG | 1 cut(s) | 741 |
| BseCI | ATCGAT | 1 cut(s) | 120 |
| BseDI | CCNNGG | 4 cut(s) | 186, 450, 486, 676 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 122, 680 |
| BseNI | ACTGG | 1 cut(s) | 741 |
| BseRI | GAGGAG | 2 cut(s) | 693, 696 |
| BseSI | GKGCMC | 1 cut(s) | 46 |
| BseXI | GCAGC | 1 cut(s) | 402 |
| BshFI | GGCC | 5 cut(s) | 44, 60, 371, 379, 449 |
| BshTI | ACCGGT | 1 cut(s) | 175 |
| BshVI | ATCGAT | 1 cut(s) | 120 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsiHKCI | CYCGRG | 3 cut(s) | 297, 527, 675 |
| BsiSI | CCGG | 4 cut(s) | 56, 176, 421, 611 |
| BslFI | GGGAC | 1 cut(s) | 28 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 122, 680 |
| BsmAI | GTCTC | 3 cut(s) | 270, 300, 338 |
| BsmBI | CGTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 1 cut(s) | 28 |
| BsmI | GAATGC | 2 cut(s) | 187, 675 |
| BsnI | GGCC | 5 cut(s) | 44, 60, 371, 379, 449 |
| BsoBI | CYCGRG | 3 cut(s) | 297, 527, 675 |
| Bsp120I | GGGCCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 2 cut(s) | 46, 114 |
| Bsp143I | GATC | 3 cut(s) | 130, 566, 628 |
| Bsp19I | CCATGG | 1 cut(s) | 186 |
| BspACI | CCGC | 6 cut(s) | 4, 30, 191, 343, 376, 702 |
| BspANI | GGCC | 5 cut(s) | 44, 60, 371, 379, 449 |
| BspDI | ATCGAT | 1 cut(s) | 120 |
| BspHI | TCATGA | 1 cut(s) | 91 |
| BspLI | GGNNCC | 5 cut(s) | 44, 231, 456, 493, 525 |
| BsrFI | RCCGGY | 1 cut(s) | 175 |
| BsrI | ACTGG | 1 cut(s) | 741 |
| BssAI | RCCGGY | 1 cut(s) | 175 |
| BssECI | CCNNGG | 4 cut(s) | 186, 450, 486, 676 |
| BssMI | GATC | 3 cut(s) | 130, 566, 628 |
| BssT1I | CCWWGG | 3 cut(s) | 186, 450, 486 |
| Bst6I | CTCTTC | 1 cut(s) | 557 |
| BstDEI | CTNAG | 1 cut(s) | 285 |
| BstDSI | CCRYGG | 1 cut(s) | 186 |
| BstHHI | GCGC | 1 cut(s) | 360 |
| BstKTI | GATC | 3 cut(s) | 133, 569, 631 |
| BstMAI | GTCTC | 3 cut(s) | 270, 300, 338 |
| BstMBI | GATC | 3 cut(s) | 130, 566, 628 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 330 |
| BstSCI | CCNGG | 1 cut(s) | 55 |
| BstSLI | GKGCMC | 1 cut(s) | 46 |
| BstV1I | GCAGC | 1 cut(s) | 402 |
| BstX2I | RGATCY | 1 cut(s) | 566 |
| BstYI | RGATCY | 1 cut(s) | 566 |
| Bsu15I | ATCGAT | 1 cut(s) | 120 |
| BsuRI | GGCC | 5 cut(s) | 44, 60, 371, 379, 449 |
| BsuTUI | ATCGAT | 1 cut(s) | 120 |
| BtgI | CCRYGG | 1 cut(s) | 186 |
| CciI | TCATGA | 1 cut(s) | 91 |
| CfoI | GCGC | 1 cut(s) | 360 |
| Cfr10I | RCCGGY | 1 cut(s) | 175 |
| Cfr13I | GGNCC | 3 cut(s) | 42, 43, 58 |
| ClaI | ATCGAT | 1 cut(s) | 120 |
| CspAI | ACCGGT | 1 cut(s) | 175 |
| CviAII | CATG | 3 cut(s) | 92, 187, 352 |
| DdeI | CTNAG | 1 cut(s) | 285 |
| DpnI | GATC | 3 cut(s) | 132, 568, 630 |
| DpnII | GATC | 3 cut(s) | 130, 566, 628 |
| Eam1104I | CTCTTC | 1 cut(s) | 557 |
| EarI | CTCTTC | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 3 cut(s) | 186, 450, 486 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco88I | CYCGRG | 3 cut(s) | 297, 527, 675 |
| EcoO109I | RGGNCCY | 1 cut(s) | 43 |
| EcoT14I | CCWWGG | 3 cut(s) | 186, 450, 486 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 3 cut(s) | 186, 450, 486 |
| Esp3I | CGTCTC | 1 cut(s) | 338 |
| FaeI | CATG | 3 cut(s) | 95, 190, 355 |
| FaiI | YATR | 9 cut(s) | 88, 93, 188, 293, 353, 404, 521, 572, 665 |
| FaqI | GGGAC | 1 cut(s) | 28 |
| FatI | CATG | 3 cut(s) | 91, 186, 351 |
| FauI | CCCGC | 1 cut(s) | 184 |
| FbaI | TGATCA | 1 cut(s) | 628 |
| Fnu4HI | GCNGC | 3 cut(s) | 344, 377, 391 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 3 cut(s) | 344, 377, 391 |
| FspBI | CTAG | 1 cut(s) | 306 |
| FspI | TGCGCA | 1 cut(s) | 359 |
| GlaI | GCGC | 1 cut(s) | 359 |
| GluI | GCNGC | 3 cut(s) | 344, 377, 391 |
| HaeIII | GGCC | 5 cut(s) | 44, 60, 371, 379, 449 |
| HapII | CCGG | 4 cut(s) | 56, 176, 421, 611 |
| HhaI | GCGC | 1 cut(s) | 360 |
| Hin1II | CATG | 3 cut(s) | 95, 190, 355 |
| Hin6I | GCGC | 1 cut(s) | 358 |
| HinP1I | GCGC | 1 cut(s) | 358 |
| HindIII | AAGCTT | 2 cut(s) | 473, 575 |
| HinfI | GANTC | 1 cut(s) | 737 |
| HpaII | CCGG | 4 cut(s) | 56, 176, 421, 611 |
| HphI | GGTGA | 3 cut(s) | 190, 607, 625 |
| Hpy188I | TCNGA | 2 cut(s) | 169, 561 |
| Hpy188III | TCNNGA | 5 cut(s) | 92, 269, 299, 337, 581 |
| HpyAV | CCTTC | 3 cut(s) | 390, 439, 586 |
| HpyCH4IV | ACGT | 1 cut(s) | 17 |
| HpyCH4V | TGCA | 3 cut(s) | 173, 215, 464 |
| HpyF3I | CTNAG | 1 cut(s) | 285 |
| HpySE526I | ACGT | 1 cut(s) | 17 |
| Hsp92II | CATG | 3 cut(s) | 95, 190, 355 |
| HspAI | GCGC | 1 cut(s) | 358 |
| Ksp22I | TGATCA | 1 cut(s) | 628 |
| Kzo9I | GATC | 3 cut(s) | 130, 566, 628 |
| LpnPI | CCDG | 5 cut(s) | 69, 189, 429, 434, 624 |
| Lsp1109I | GCAGC | 1 cut(s) | 402 |
| LweI | GCATC | 4 cut(s) | 58, 160, 345, 521 |
| MaeI | CTAG | 1 cut(s) | 306 |
| MaeII | ACGT | 1 cut(s) | 17 |
| MalI | GATC | 3 cut(s) | 132, 568, 630 |
| MboI | GATC | 3 cut(s) | 130, 566, 628 |
| MboII | GAAGA | 4 cut(s) | 442, 574, 596, 650 |
| MflI | RGATCY | 1 cut(s) | 566 |
| MhlI | GDGCHC | 2 cut(s) | 46, 114 |
| MmeI | TCCRAC | 1 cut(s) | 539 |
| MnlI | CCTC | 6 cut(s) | 74, 212, 406, 616, 671, 674 |
| MseI | TTAA | 2 cut(s) | 366, 441 |
| MslI | CAYNNNNRTG | 1 cut(s) | 96 |
| MspI | CCGG | 4 cut(s) | 56, 176, 421, 611 |
| MspR9I | CCNGG | 1 cut(s) | 57 |
| Mva1269I | GAATGC | 2 cut(s) | 187, 675 |
| NciI | CCSGG | 1 cut(s) | 57 |
| NcoI | CCATGG | 1 cut(s) | 186 |
| NdeII | GATC | 3 cut(s) | 130, 566, 628 |
| NlaIII | CATG | 3 cut(s) | 95, 190, 355 |
| NlaIV | GGNNCC | 5 cut(s) | 44, 231, 456, 493, 525 |
| NsbI | TGCGCA | 1 cut(s) | 359 |
| PagI | TCATGA | 1 cut(s) | 91 |
| PctI | GAATGC | 2 cut(s) | 187, 675 |
| PfeI | GAWTC | 1 cut(s) | 737 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 122 |
| PinAI | ACCGGT | 1 cut(s) | 175 |
| PkrI | GCNGC | 3 cut(s) | 345, 378, 392 |
| PshAI | GACNNNNGTC | 1 cut(s) | 330 |
| PspN4I | GGNNCC | 5 cut(s) | 44, 231, 456, 493, 525 |
| PspOMI | GGGCCC | 1 cut(s) | 42 |
| PspPI | GGNCC | 3 cut(s) | 42, 43, 58 |
| PsuI | RGATCY | 1 cut(s) | 566 |
| RseI | CAYNNNNRTG | 1 cut(s) | 96 |
| SaqAI | TTAA | 2 cut(s) | 366, 441 |
| SatI | GCNGC | 3 cut(s) | 344, 377, 391 |
| Sau3AI | GATC | 3 cut(s) | 130, 566, 628 |
| Sau96I | GGNCC | 3 cut(s) | 42, 43, 58 |
| ScrFI | CCNGG | 1 cut(s) | 57 |
| SduI | GDGCHC | 2 cut(s) | 46, 114 |
| SfaNI | GCATC | 4 cut(s) | 58, 160, 345, 521 |
| SgrAI | CRCCGGYG | 1 cut(s) | 175 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 96 |
| SmlI | CTYRAG | 2 cut(s) | 161, 540 |
| SmoI | CTYRAG | 2 cut(s) | 161, 540 |
| SsiI | CCGC | 6 cut(s) | 4, 30, 191, 343, 376, 702 |
| SspMI | CTAG | 1 cut(s) | 306 |
| StyD4I | CCNGG | 1 cut(s) | 55 |
| StyI | CCWWGG | 3 cut(s) | 186, 450, 486 |
| TaiI | ACGT | 1 cut(s) | 20 |
| TaqI | TCGA | 3 cut(s) | 120, 133, 735 |
| TauI | GCSGC | 2 cut(s) | 346, 379 |
| TfiI | GAWTC | 1 cut(s) | 737 |
| Tru1I | TTAA | 2 cut(s) | 366, 441 |
| Tru9I | TTAA | 2 cut(s) | 366, 441 |
| TseI | GCWGC | 1 cut(s) | 390 |
| TspDTI | ATGAA | 3 cut(s) | 130, 198, 587 |
| TspGWI | ACGGA | 1 cut(s) | 451 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 122 |
| XspI | CTAG | 1 cut(s) | 306 |