Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 55 - 486 | 5.1e-75 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 134 |
| AccI | GTMKAC | 1 cut(s) | 299 |
| AccII | CGCG | 1 cut(s) | 1509 |
| AciI | CCGC | 1 cut(s) | 122 |
| AclI | AACGTT | 1 cut(s) | 189 |
| AclWI | GGATC | 4 cut(s) | 665, 702, 715, 828 |
| AcsI | RAATTY | 7 cut(s) | 84, 420, 524, 901, 1057, 1302, 1328 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 131, 220, 1145, 1486 |
| AflIII | ACRYGT | 1 cut(s) | 1218 |
| AgsI | TTSAA | 8 cut(s) | 280, 559, 642, 688, 983, 1024, 1079, 1327 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 328 |
| AleI | CACNNNNGTG | 2 cut(s) | 943, 1414 |
| AluBI | AGCT | 7 cut(s) | 151, 394, 402, 438, 1034, 1073, 1154 |
| AluI | AGCT | 7 cut(s) | 151, 394, 402, 438, 1034, 1073, 1154 |
| Alw21I | GWGCWC | 1 cut(s) | 649 |
| Alw26I | GTCTC | 4 cut(s) | 423, 1106, 1339, 1502 |
| AlwI | GGATC | 4 cut(s) | 665, 702, 715, 828 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1139 |
| AoxI | GGCC | 2 cut(s) | 222, 307 |
| ApeKI | GCWGC | 6 cut(s) | 382, 438, 461, 1070, 1100, 1154 |
| ApoI | RAATTY | 7 cut(s) | 84, 420, 524, 901, 1057, 1302, 1328 |
| AseI | ATTAAT | 1 cut(s) | 744 |
| AspLEI | GCGC | 3 cut(s) | 663, 1509, 1511 |
| AspS9I | GGNCC | 2 cut(s) | 223, 1349 |
| AsuC2I | CCSGG | 1 cut(s) | 1130 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 308, 1214, 1468 |
| AvaII | GGWCC | 1 cut(s) | 1349 |
| BaeGI | GKGCMC | 1 cut(s) | 137 |
| BamHI | GGATCC | 1 cut(s) | 707 |
| BanI | GGYRCC | 1 cut(s) | 134 |
| BanII | GRGCYC | 2 cut(s) | 481, 599 |
| BauI | CACGAG | 1 cut(s) | 943 |
| BbsI | GAAGAC | 1 cut(s) | 133 |
| Bbv12I | GWGCWC | 1 cut(s) | 649 |
| BbvCI | CCTCAGC | 1 cut(s) | 1266 |
| BbvI | GCAGC | 6 cut(s) | 394, 425, 448, 1082, 1112, 1141 |
| BccI | CCATC | 7 cut(s) | 110, 359, 1139, 1175, 1199, 1281, 1484 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 124, 158 |
| BciVI | GTATCC | 1 cut(s) | 1178 |
| BcnI | CCSGG | 1 cut(s) | 1130 |
| BcoDI | GTCTC | 4 cut(s) | 423, 1106, 1339, 1502 |
| BfaI | CTAG | 1 cut(s) | 495 |
| BfmI | CTRYAG | 2 cut(s) | 1155, 1462 |
| BfoI | RGCGCY | 1 cut(s) | 664 |
| BfuI | GTATCC | 1 cut(s) | 1178 |
| BglII | AGATCT | 1 cut(s) | 536 |
| BisI | GCNGC | 6 cut(s) | 383, 439, 462, 1071, 1101, 1155 |
| BlsI | GCNGC | 6 cut(s) | 384, 440, 463, 1072, 1102, 1156 |
| Bme1390I | CCNGG | 1 cut(s) | 1130 |
| Bme18I | GGWCC | 1 cut(s) | 1349 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 2 cut(s) | 223, 1349 |
| BmiI | GGNNCC | 5 cut(s) | 136, 225, 709, 836, 858 |
| BmrFI | CCNGG | 1 cut(s) | 1130 |
| BmsI | GCATC | 2 cut(s) | 1057, 1252 |
| BpiI | GAAGAC | 1 cut(s) | 133 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1266 |
| BpuEI | CTTGAG | 2 cut(s) | 583, 1138 |
| BpuMI | CCSGG | 1 cut(s) | 1130 |
| Bsa29I | ATCGAT | 1 cut(s) | 1041 |
| BsaAI | YACGTR | 1 cut(s) | 879 |
| BsaBI | GATNNNNATC | 1 cut(s) | 879 |
| BsaI | GGTCTC | 2 cut(s) | 1106, 1502 |
| BsaJI | CCNNGG | 3 cut(s) | 1230, 1352, 1517 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 131, 220, 1145, 1486 |
| Bse118I | RCCGGY | 1 cut(s) | 1383 |
| Bse1I | ACTGG | 3 cut(s) | 225, 474, 927 |
| Bse3DI | GCAATG | 1 cut(s) | 612 |
| Bse8I | GATNNNNATC | 1 cut(s) | 879 |
| BseCI | ATCGAT | 1 cut(s) | 1041 |
| BseDI | CCNNGG | 3 cut(s) | 1230, 1352, 1517 |
| BseGI | GGATG | 5 cut(s) | 18, 102, 1150, 1447, 1495 |
| BseJI | GATNNNNATC | 1 cut(s) | 879 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 131, 220, 1145, 1486 |
| BseMI | GCAATG | 1 cut(s) | 612 |
| BseMII | CTCAG | 2 cut(s) | 477, 1257 |
| BseNI | ACTGG | 3 cut(s) | 225, 474, 927 |
| BsePI | GCGCGC | 1 cut(s) | 1507 |
| BseSI | GKGCMC | 1 cut(s) | 137 |
| BseXI | GCAGC | 6 cut(s) | 394, 425, 448, 1082, 1112, 1141 |
| BsgI | GTGCAG | 1 cut(s) | 1466 |
| Bsh1236I | CGCG | 1 cut(s) | 1509 |
| BshFI | GGCC | 2 cut(s) | 224, 309 |
| BshNI | GGYRCC | 1 cut(s) | 134 |
| BshVI | ATCGAT | 1 cut(s) | 1041 |
| BsiHKAI | GWGCWC | 1 cut(s) | 649 |
| BsiSI | CCGG | 3 cut(s) | 214, 1130, 1384 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 131, 220, 1145, 1486 |
| BsmAI | GTCTC | 4 cut(s) | 423, 1106, 1339, 1502 |
| BsmBI | CGTCTC | 1 cut(s) | 1339 |
| BsmI | GAATGC | 3 cut(s) | 631, 736, 1245 |
| BsnI | GGCC | 2 cut(s) | 224, 309 |
| Bso31I | GGTCTC | 2 cut(s) | 1106, 1502 |
| Bsp1286I | GDGCHC | 4 cut(s) | 137, 481, 599, 649 |
| Bsp143I | GATC | 4 cut(s) | 536, 670, 707, 820 |
| Bsp19I | CCATGG | 1 cut(s) | 1230 |
| BspACI | CCGC | 1 cut(s) | 122 |
| BspANI | GGCC | 2 cut(s) | 224, 309 |
| BspCNI | CTCAG | 2 cut(s) | 478, 1258 |
| BspDI | ATCGAT | 1 cut(s) | 1041 |
| BspFNI | CGCG | 1 cut(s) | 1509 |
| BspLI | GGNNCC | 5 cut(s) | 136, 225, 709, 836, 858 |
| BspMAI | CTGCAG | 1 cut(s) | 1159 |
| BspPI | GGATC | 4 cut(s) | 665, 702, 715, 828 |
| BspQI | GCTCTTC | 1 cut(s) | 158 |
| BspT107I | GGYRCC | 1 cut(s) | 134 |
| BspTNI | GGTCTC | 2 cut(s) | 1106, 1502 |
| BsrDI | GCAATG | 1 cut(s) | 612 |
| BsrFI | RCCGGY | 1 cut(s) | 1383 |
| BsrI | ACTGG | 3 cut(s) | 225, 474, 927 |
| BssAI | RCCGGY | 1 cut(s) | 1383 |
| BssECI | CCNNGG | 3 cut(s) | 1230, 1352, 1517 |
| BssHII | GCGCGC | 1 cut(s) | 1507 |
| BssMI | GATC | 4 cut(s) | 536, 670, 707, 820 |
| BssNAI | GTATAC | 1 cut(s) | 300 |
| BssSI | CACGAG | 1 cut(s) | 943 |
| BssT1I | CCWWGG | 1 cut(s) | 1230 |
| Bst1107I | GTATAC | 1 cut(s) | 300 |
| Bst2BI | CACGAG | 1 cut(s) | 943 |
| Bst4CI | ACNGT | 1 cut(s) | 139 |
| Bst6I | CTCTTC | 1 cut(s) | 158 |
| BstBAI | YACGTR | 1 cut(s) | 879 |
| BstC8I | GCNNGC | 4 cut(s) | 396, 400, 916, 1509 |
| BstDEI | CTNAG | 7 cut(s) | 80, 403, 425, 486, 544, 884, 1266 |
| BstDSI | CCRYGG | 1 cut(s) | 1230 |
| BstF5I | GGATG | 5 cut(s) | 18, 102, 1150, 1447, 1495 |
| BstFNI | CGCG | 1 cut(s) | 1509 |
| BstH2I | RGCGCY | 1 cut(s) | 664 |
| BstHHI | GCGC | 3 cut(s) | 663, 1509, 1511 |
| BstKTI | GATC | 4 cut(s) | 539, 673, 710, 823 |
| BstMAI | GTCTC | 4 cut(s) | 423, 1106, 1339, 1502 |
| BstMBI | GATC | 4 cut(s) | 536, 670, 707, 820 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 391, 594, 609, 1425 |
| BstNSI | RCATGY | 3 cut(s) | 275, 961, 1222 |
| BstSCI | CCNGG | 1 cut(s) | 1128 |
| BstSFI | CTRYAG | 2 cut(s) | 1155, 1462 |
| BstSLI | GKGCMC | 1 cut(s) | 137 |
| BstSNI | TACGTA | 1 cut(s) | 879 |
| BstUI | CGCG | 1 cut(s) | 1509 |
| BstV1I | GCAGC | 6 cut(s) | 394, 425, 448, 1082, 1112, 1141 |
| BstV2I | GAAGAC | 1 cut(s) | 133 |
| BstX2I | RGATCY | 3 cut(s) | 536, 707, 820 |
| BstYI | RGATCY | 3 cut(s) | 536, 707, 820 |
| BstZ17I | GTATAC | 1 cut(s) | 300 |
| Bsu15I | ATCGAT | 1 cut(s) | 1041 |
| BsuI | GTATCC | 1 cut(s) | 1178 |
| BsuRI | GGCC | 2 cut(s) | 224, 309 |
| BsuTUI | ATCGAT | 1 cut(s) | 1041 |
| BtgI | CCRYGG | 1 cut(s) | 1230 |
| BtsCI | GGATG | 5 cut(s) | 18, 102, 1150, 1447, 1495 |
| BtsIMutI | CAGTG | 2 cut(s) | 934, 1103 |
| Cac8I | GCNNGC | 4 cut(s) | 396, 400, 916, 1509 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1139 |
| CfoI | GCGC | 3 cut(s) | 663, 1509, 1511 |
| Cfr10I | RCCGGY | 1 cut(s) | 1383 |
| Cfr13I | GGNCC | 2 cut(s) | 223, 1349 |
| ClaI | ATCGAT | 1 cut(s) | 1041 |
| CviAII | CATG | 9 cut(s) | 272, 958, 1097, 1219, 1231, 1343, 1471, 1486, 1527 |
| DdeI | CTNAG | 7 cut(s) | 80, 403, 425, 486, 544, 884, 1266 |
| DpnI | GATC | 4 cut(s) | 538, 672, 709, 822 |
| DpnII | GATC | 4 cut(s) | 536, 670, 707, 820 |
| DraI | TTTAAA | 1 cut(s) | 1432 |
| DriI | GACNNNNNGTC | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 1 cut(s) | 158 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 328 |
| EarI | CTCTTC | 1 cut(s) | 158 |
| Eco105I | TACGTA | 1 cut(s) | 879 |
| Eco130I | CCWWGG | 1 cut(s) | 1230 |
| Eco24I | GRGCYC | 2 cut(s) | 481, 599 |
| Eco31I | GGTCTC | 2 cut(s) | 1106, 1502 |
| Eco47I | GGWCC | 1 cut(s) | 1349 |
| EcoRI | GAATTC | 2 cut(s) | 420, 524 |
| EcoT14I | CCWWGG | 1 cut(s) | 1230 |
| EcoT22I | ATGCAT | 2 cut(s) | 631, 1089 |
| EcoT38I | GRGCYC | 2 cut(s) | 481, 599 |
| ErhI | CCWWGG | 1 cut(s) | 1230 |
| Esp3I | CGTCTC | 1 cut(s) | 1339 |
| FaeI | CATG | 9 cut(s) | 275, 961, 1100, 1222, 1234, 1346, 1474, 1489, 1530 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 705, 737 |
| FatI | CATG | 9 cut(s) | 271, 957, 1096, 1218, 1230, 1342, 1470, 1485, 1526 |
| FauI | CCCGC | 1 cut(s) | 129 |
| FblI | GTMKAC | 1 cut(s) | 299 |
| Fnu4HI | GCNGC | 6 cut(s) | 383, 439, 462, 1071, 1101, 1155 |
| FokI | GGATG | 5 cut(s) | 5, 89, 1157, 1454, 1502 |
| FriOI | GRGCYC | 2 cut(s) | 481, 599 |
| Fsp4HI | GCNGC | 6 cut(s) | 383, 439, 462, 1071, 1101, 1155 |
| FspBI | CTAG | 1 cut(s) | 495 |
| GlaI | GCGC | 3 cut(s) | 662, 1508, 1510 |
| GluI | GCNGC | 6 cut(s) | 383, 439, 462, 1071, 1101, 1155 |
| HaeII | RGCGCY | 1 cut(s) | 664 |
| HaeIII | GGCC | 2 cut(s) | 224, 309 |
| HapII | CCGG | 3 cut(s) | 214, 1130, 1384 |
| HhaI | GCGC | 3 cut(s) | 663, 1509, 1511 |
| Hin1II | CATG | 9 cut(s) | 275, 961, 1100, 1222, 1234, 1346, 1474, 1489, 1530 |
| Hin6I | GCGC | 3 cut(s) | 661, 1507, 1509 |
| HinP1I | GCGC | 3 cut(s) | 661, 1507, 1509 |
| HindIII | AAGCTT | 1 cut(s) | 392 |
| HinfI | GANTC | 5 cut(s) | 548, 638, 923, 1160, 1316 |
| HpaII | CCGG | 3 cut(s) | 214, 1130, 1384 |
| HphI | GGTGA | 4 cut(s) | 16, 308, 1214, 1468 |
| Hpy166II | GTNNAC | 3 cut(s) | 300, 757, 1476 |
| Hpy188I | TCNGA | 8 cut(s) | 107, 334, 487, 712, 900, 1165, 1356, 1518 |
| Hpy188III | TCNNGA | 4 cut(s) | 769, 983, 1076, 1178 |
| Hpy8I | GTNNAC | 3 cut(s) | 300, 757, 1476 |
| HpyAV | CCTTC | 4 cut(s) | 37, 73, 220, 1363 |
| HpyCH4III | ACNGT | 1 cut(s) | 139 |
| HpyCH4IV | ACGT | 2 cut(s) | 189, 878 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 391, 594, 609, 1425 |
| HpyF3I | CTNAG | 7 cut(s) | 80, 403, 425, 486, 544, 884, 1266 |
| HpySE526I | ACGT | 2 cut(s) | 189, 878 |
| Hsp92II | CATG | 9 cut(s) | 275, 961, 1100, 1222, 1234, 1346, 1474, 1489, 1530 |
| HspAI | GCGC | 3 cut(s) | 661, 1507, 1509 |
| Kzo9I | GATC | 4 cut(s) | 536, 670, 707, 820 |
| LguI | GCTCTTC | 1 cut(s) | 158 |
| LmnI | GCTCC | 1 cut(s) | 856 |
| Lsp1109I | GCAGC | 6 cut(s) | 394, 425, 448, 1082, 1112, 1141 |
| LweI | GCATC | 2 cut(s) | 1057, 1252 |
| MaeI | CTAG | 1 cut(s) | 495 |
| MaeII | ACGT | 2 cut(s) | 189, 878 |
| MaeIII | GTNAC | 1 cut(s) | 497 |
| MalI | GATC | 4 cut(s) | 538, 672, 709, 822 |
| MboI | GATC | 4 cut(s) | 536, 670, 707, 820 |
| MflI | RGATCY | 3 cut(s) | 536, 707, 820 |
| MhlI | GDGCHC | 4 cut(s) | 137, 481, 599, 649 |
| MlyI | GAGTC | 1 cut(s) | 1169 |
| Mph1103I | ATGCAT | 2 cut(s) | 631, 1089 |
| MseI | TTAA | 6 cut(s) | 161, 723, 744, 807, 1061, 1431 |
| MslI | CAYNNNNRTG | 3 cut(s) | 943, 1414, 1488 |
| MspI | CCGG | 3 cut(s) | 214, 1130, 1384 |
| MspR9I | CCNGG | 1 cut(s) | 1130 |
| Mva1269I | GAATGC | 3 cut(s) | 631, 736, 1245 |
| MvnI | CGCG | 1 cut(s) | 1509 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 391, 594, 609, 1425 |
| NciI | CCSGG | 1 cut(s) | 1130 |
| NcoI | CCATGG | 1 cut(s) | 1230 |
| NdeII | GATC | 4 cut(s) | 536, 670, 707, 820 |
| NlaIII | CATG | 9 cut(s) | 275, 961, 1100, 1222, 1234, 1346, 1474, 1489, 1530 |
| NlaIV | GGNNCC | 5 cut(s) | 136, 225, 709, 836, 858 |
| NmuCI | GTSAC | 1 cut(s) | 497 |
| NsiI | ATGCAT | 2 cut(s) | 631, 1089 |
| NspI | RCATGY | 3 cut(s) | 275, 961, 1222 |
| OliI | CACNNNNGTG | 2 cut(s) | 943, 1414 |
| PauI | GCGCGC | 1 cut(s) | 1507 |
| PciI | ACATGT | 1 cut(s) | 1218 |
| PciSI | GCTCTTC | 1 cut(s) | 158 |
| PctI | GAATGC | 3 cut(s) | 631, 736, 1245 |
| PfeI | GAWTC | 4 cut(s) | 548, 638, 923, 1316 |
| PkrI | GCNGC | 6 cut(s) | 384, 440, 463, 1072, 1102, 1156 |
| PleI | GAGTC | 1 cut(s) | 1168 |
| PpsI | GAGTC | 1 cut(s) | 1168 |
| Ppu21I | YACGTR | 1 cut(s) | 879 |
| PscI | ACATGT | 1 cut(s) | 1218 |
| PshBI | ATTAAT | 1 cut(s) | 744 |
| Psp1406I | AACGTT | 1 cut(s) | 189 |
| PspN4I | GGNNCC | 5 cut(s) | 136, 225, 709, 836, 858 |
| PspPI | GGNCC | 2 cut(s) | 223, 1349 |
| PstI | CTGCAG | 1 cut(s) | 1159 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1139 |
| PsuI | RGATCY | 3 cut(s) | 536, 707, 820 |
| PteI | GCGCGC | 1 cut(s) | 1507 |
| RseI | CAYNNNNRTG | 3 cut(s) | 943, 1414, 1488 |
| SapI | GCTCTTC | 1 cut(s) | 158 |
| SaqAI | TTAA | 6 cut(s) | 161, 723, 744, 807, 1061, 1431 |
| SatI | GCNGC | 6 cut(s) | 383, 439, 462, 1071, 1101, 1155 |
| Sau3AI | GATC | 4 cut(s) | 536, 670, 707, 820 |
| Sau96I | GGNCC | 2 cut(s) | 223, 1349 |
| SchI | GAGTC | 1 cut(s) | 1169 |
| ScrFI | CCNGG | 1 cut(s) | 1130 |
| SduI | GDGCHC | 4 cut(s) | 137, 481, 599, 649 |
| SfaNI | GCATC | 2 cut(s) | 1057, 1252 |
| SfcI | CTRYAG | 2 cut(s) | 1155, 1462 |
| SinI | GGWCC | 1 cut(s) | 1349 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 943, 1414, 1488 |
| SmlI | CTYRAG | 2 cut(s) | 598, 1117 |
| SmoI | CTYRAG | 2 cut(s) | 598, 1117 |
| SnaBI | TACGTA | 1 cut(s) | 879 |
| SsiI | CCGC | 1 cut(s) | 122 |
| SspMI | CTAG | 1 cut(s) | 495 |
| StyD4I | CCNGG | 1 cut(s) | 1128 |
| StyI | CCWWGG | 1 cut(s) | 1230 |
| TaaI | ACNGT | 1 cut(s) | 139 |
| TaiI | ACGT | 2 cut(s) | 192, 881 |
| TaqI | TCGA | 5 cut(s) | 144, 413, 830, 1041, 1276 |
| TfiI | GAWTC | 4 cut(s) | 548, 638, 923, 1316 |
| Tru1I | TTAA | 6 cut(s) | 161, 723, 744, 807, 1061, 1431 |
| Tru9I | TTAA | 6 cut(s) | 161, 723, 744, 807, 1061, 1431 |
| TscAI | CASTG | 2 cut(s) | 934, 1110 |
| TseFI | GTSAC | 1 cut(s) | 497 |
| TseI | GCWGC | 6 cut(s) | 382, 438, 461, 1070, 1100, 1154 |
| Tsp45I | GTSAC | 1 cut(s) | 497 |
| TspDTI | ATGAA | 7 cut(s) | 19, 638, 825, 1085, 1331, 1406, 1458 |
| TspRI | CASTG | 2 cut(s) | 934, 1110 |
| VpaK11BI | GGWCC | 1 cut(s) | 1349 |
| VspI | ATTAAT | 1 cut(s) | 744 |
| XapI | RAATTY | 7 cut(s) | 84, 420, 524, 901, 1057, 1302, 1328 |
| XceI | RCATGY | 3 cut(s) | 275, 961, 1222 |
| XmiI | GTMKAC | 1 cut(s) | 299 |
| XspI | CTAG | 1 cut(s) | 495 |
| Zsp2I | ATGCAT | 2 cut(s) | 631, 1089 |