SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF212 | PF02681 | 145 - 238 | 5.6e-35 | Divergent PAP2 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 189 |
| AciI | CCGC | 1 cut(s) | 620 |
| AcoI | YGGCCR | 1 cut(s) | 176 |
| AcsI | RAATTY | 2 cut(s) | 88, 499 |
| AcyI | GRCGYC | 1 cut(s) | 713 |
| AfaI | GTAC | 3 cut(s) | 294, 324, 795 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 220, 279, 280, 860 |
| AgsI | TTSAA | 4 cut(s) | 103, 156, 267, 499 |
| AjnI | CCWGG | 2 cut(s) | 859, 910 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 62, 94 |
| AleI | CACNNNNGTG | 1 cut(s) | 354 |
| AluBI | AGCT | 7 cut(s) | 36, 109, 260, 371, 707, 830, 876 |
| AluI | AGCT | 7 cut(s) | 36, 109, 260, 371, 707, 830, 876 |
| Alw21I | GWGCWC | 1 cut(s) | 581 |
| Alw26I | GTCTC | 3 cut(s) | 567, 682, 754 |
| Alw44I | GTGCAC | 1 cut(s) | 577 |
| AoxI | GGCC | 2 cut(s) | 140, 176 |
| ApaLI | GTGCAC | 1 cut(s) | 577 |
| ApeKI | GCWGC | 1 cut(s) | 431 |
| ApoI | RAATTY | 2 cut(s) | 88, 499 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 173, 205, 433, 465 |
| AspLEI | GCGC | 1 cut(s) | 604 |
| AspS9I | GGNCC | 3 cut(s) | 229, 235, 270 |
| AsuC2I | CCSGG | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 1 cut(s) | 412 |
| AvaII | GGWCC | 3 cut(s) | 229, 235, 270 |
| BaeGI | GKGCMC | 1 cut(s) | 581 |
| BalI | TGGCCA | 1 cut(s) | 178 |
| Bbv12I | GWGCWC | 1 cut(s) | 581 |
| BbvCI | CCTCAGC | 1 cut(s) | 708 |
| BbvI | GCAGC | 1 cut(s) | 418 |
| BccI | CCATC | 2 cut(s) | 17, 168 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 875, 909 |
| BciT130I | CCWGG | 2 cut(s) | 861, 912 |
| BcnI | CCSGG | 1 cut(s) | 233 |
| BcoDI | GTCTC | 3 cut(s) | 567, 682, 754 |
| BfaI | CTAG | 2 cut(s) | 144, 771 |
| BfoI | RGCGCY | 1 cut(s) | 605 |
| BfuAI | ACCTGC | 1 cut(s) | 189 |
| BisI | GCNGC | 1 cut(s) | 432 |
| BlsI | GCNGC | 1 cut(s) | 433 |
| BmcAI | AGTACT | 1 cut(s) | 795 |
| Bme1390I | CCNGG | 3 cut(s) | 233, 861, 912 |
| Bme18I | GGWCC | 3 cut(s) | 229, 235, 270 |
| BmgT120I | GGNCC | 3 cut(s) | 229, 235, 270 |
| BmiI | GGNNCC | 2 cut(s) | 231, 272 |
| BmrFI | CCNGG | 3 cut(s) | 233, 861, 912 |
| BmsI | GCATC | 4 cut(s) | 255, 382, 661, 818 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 865, 897 |
| BpmI | CTGGAG | 3 cut(s) | 224, 567, 892 |
| Bpu10I | CCTNAGC | 2 cut(s) | 110, 708 |
| BpuEI | CTTGAG | 1 cut(s) | 816 |
| BpuMI | CCSGG | 1 cut(s) | 233 |
| BsaHI | GRCGYC | 1 cut(s) | 713 |
| BsaJI | CCNNGG | 6 cut(s) | 396, 803, 842, 859, 881, 911 |
| BsaWI | WCCGGW | 1 cut(s) | 634 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 503, 533, 840, 870 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 220, 279, 280, 860 |
| Bse1I | ACTGG | 1 cut(s) | 432 |
| BseBI | CCWGG | 2 cut(s) | 861, 912 |
| BseDI | CCNNGG | 6 cut(s) | 396, 803, 842, 859, 881, 911 |
| BseGI | GGATG | 2 cut(s) | 462, 809 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 220, 279, 280, 860 |
| BseMII | CTCAG | 4 cut(s) | 61, 124, 324, 699 |
| BseNI | ACTGG | 1 cut(s) | 432 |
| BseSI | GKGCMC | 1 cut(s) | 581 |
| BseXI | GCAGC | 1 cut(s) | 418 |
| BshFI | GGCC | 2 cut(s) | 142, 178 |
| BsiHKAI | GWGCWC | 1 cut(s) | 581 |
| BsiSI | CCGG | 2 cut(s) | 233, 635 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 220, 279, 280, 860 |
| BsmAI | GTCTC | 3 cut(s) | 567, 682, 754 |
| BsmBI | CGTCTC | 1 cut(s) | 567 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsnI | GGCC | 2 cut(s) | 142, 178 |
| Bsp1286I | GDGCHC | 1 cut(s) | 581 |
| Bsp1407I | TGTACA | 2 cut(s) | 292, 322 |
| Bsp143I | GATC | 1 cut(s) | 483 |
| BspACI | CCGC | 1 cut(s) | 620 |
| BspANI | GGCC | 2 cut(s) | 142, 178 |
| BspCNI | CTCAG | 4 cut(s) | 60, 123, 323, 700 |
| BspLI | GGNNCC | 2 cut(s) | 231, 272 |
| BspMI | ACCTGC | 1 cut(s) | 189 |
| BsrGI | TGTACA | 2 cut(s) | 292, 322 |
| BsrI | ACTGG | 1 cut(s) | 432 |
| BssECI | CCNNGG | 6 cut(s) | 396, 803, 842, 859, 881, 911 |
| BssMI | GATC | 1 cut(s) | 483 |
| BssNI | GRCGYC | 1 cut(s) | 713 |
| BssT1I | CCWWGG | 3 cut(s) | 396, 803, 842 |
| Bst2UI | CCWGG | 2 cut(s) | 861, 912 |
| Bst4CI | ACNGT | 3 cut(s) | 356, 480, 748 |
| BstACI | GRCGYC | 1 cut(s) | 713 |
| BstAUI | TGTACA | 2 cut(s) | 292, 322 |
| BstC8I | GCNNGC | 2 cut(s) | 554, 705 |
| BstDEI | CTNAG | 4 cut(s) | 47, 110, 310, 708 |
| BstF5I | GGATG | 2 cut(s) | 462, 809 |
| BstH2I | RGCGCY | 1 cut(s) | 605 |
| BstHHI | GCGC | 1 cut(s) | 604 |
| BstKTI | GATC | 1 cut(s) | 486 |
| BstMAI | GTCTC | 3 cut(s) | 567, 682, 754 |
| BstMBI | GATC | 1 cut(s) | 483 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 428 |
| BstNI | CCWGG | 2 cut(s) | 861, 912 |
| BstNSI | RCATGY | 3 cut(s) | 556, 695, 901 |
| BstSCI | CCNGG | 3 cut(s) | 231, 859, 910 |
| BstSLI | GKGCMC | 1 cut(s) | 581 |
| BstV1I | GCAGC | 1 cut(s) | 418 |
| BsuRI | GGCC | 2 cut(s) | 142, 178 |
| BtsCI | GGATG | 2 cut(s) | 462, 809 |
| BtsI | GCAGTG | 1 cut(s) | 579 |
| BtsIMutI | CAGTG | 2 cut(s) | 361, 579 |
| BveI | ACCTGC | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 2 cut(s) | 554, 705 |
| CfoI | GCGC | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 3 cut(s) | 229, 235, 270 |
| CseI | GACGC | 1 cut(s) | 702 |
| Csp6I | GTAC | 3 cut(s) | 293, 323, 794 |
| CviAII | CATG | 5 cut(s) | 326, 553, 611, 692, 898 |
| CviQI | GTAC | 3 cut(s) | 293, 323, 794 |
| DdeI | CTNAG | 4 cut(s) | 47, 110, 310, 708 |
| DpnI | GATC | 1 cut(s) | 485 |
| DpnII | GATC | 1 cut(s) | 483 |
| EaeI | YGGCCR | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 3 cut(s) | 396, 803, 842 |
| Eco147I | AGGCCT | 1 cut(s) | 142 |
| Eco47I | GGWCC | 3 cut(s) | 229, 235, 270 |
| EcoO109I | RGGNCCY | 1 cut(s) | 270 |
| EcoRII | CCWGG | 2 cut(s) | 859, 910 |
| EcoT14I | CCWWGG | 3 cut(s) | 396, 803, 842 |
| ErhI | CCWWGG | 3 cut(s) | 396, 803, 842 |
| Esp3I | CGTCTC | 1 cut(s) | 567 |
| FaeI | CATG | 5 cut(s) | 329, 556, 614, 695, 901 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 5 cut(s) | 325, 552, 610, 691, 897 |
| Fnu4HI | GCNGC | 1 cut(s) | 432 |
| FokI | GGATG | 2 cut(s) | 469, 796 |
| Fsp4HI | GCNGC | 1 cut(s) | 432 |
| FspBI | CTAG | 2 cut(s) | 144, 771 |
| GlaI | GCGC | 1 cut(s) | 603 |
| GluI | GCNGC | 1 cut(s) | 432 |
| GsuI | CTGGAG | 3 cut(s) | 224, 567, 892 |
| HaeII | RGCGCY | 1 cut(s) | 605 |
| HaeIII | GGCC | 2 cut(s) | 142, 178 |
| HapII | CCGG | 2 cut(s) | 233, 635 |
| HgaI | GACGC | 1 cut(s) | 702 |
| HhaI | GCGC | 1 cut(s) | 604 |
| Hin1I | GRCGYC | 1 cut(s) | 713 |
| Hin1II | CATG | 5 cut(s) | 329, 556, 614, 695, 901 |
| Hin6I | GCGC | 1 cut(s) | 602 |
| HinP1I | GCGC | 1 cut(s) | 602 |
| HinfI | GANTC | 4 cut(s) | 5, 308, 436, 623 |
| HpaII | CCGG | 2 cut(s) | 233, 635 |
| HphI | GGTGA | 1 cut(s) | 412 |
| Hpy166II | GTNNAC | 1 cut(s) | 579 |
| Hpy188I | TCNGA | 1 cut(s) | 441 |
| Hpy188III | TCNNGA | 4 cut(s) | 103, 112, 241, 546 |
| Hpy8I | GTNNAC | 1 cut(s) | 579 |
| HpyAV | CCTTC | 3 cut(s) | 49, 88, 567 |
| HpyCH4III | ACNGT | 3 cut(s) | 356, 480, 748 |
| HpyCH4V | TGCA | 4 cut(s) | 349, 579, 703, 729 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 428 |
| HpyF3I | CTNAG | 4 cut(s) | 47, 110, 310, 708 |
| Hsp92I | GRCGYC | 1 cut(s) | 713 |
| Hsp92II | CATG | 5 cut(s) | 329, 556, 614, 695, 901 |
| HspAI | GCGC | 1 cut(s) | 602 |
| Kzo9I | GATC | 1 cut(s) | 483 |
| LmnI | GCTCC | 2 cut(s) | 41, 873 |
| Lsp1109I | GCAGC | 1 cut(s) | 418 |
| LweI | GCATC | 4 cut(s) | 255, 382, 661, 818 |
| MaeI | CTAG | 2 cut(s) | 144, 771 |
| MaeIII | GTNAC | 3 cut(s) | 382, 719, 846 |
| MalI | GATC | 1 cut(s) | 485 |
| MboI | GATC | 1 cut(s) | 483 |
| MboII | GAAGA | 2 cut(s) | 255, 415 |
| MhlI | GDGCHC | 1 cut(s) | 581 |
| MlsI | TGGCCA | 1 cut(s) | 178 |
| MluCI | AATT | 3 cut(s) | 88, 151, 499 |
| MluNI | TGGCCA | 1 cut(s) | 178 |
| MlyI | GAGTC | 2 cut(s) | 302, 617 |
| MmeI | TCCRAC | 1 cut(s) | 464 |
| Mox20I | TGGCCA | 1 cut(s) | 178 |
| MscI | TGGCCA | 1 cut(s) | 178 |
| MseI | TTAA | 3 cut(s) | 56, 209, 377 |
| MslI | CAYNNNNRTG | 2 cut(s) | 354, 662 |
| Msp20I | TGGCCA | 1 cut(s) | 178 |
| MspI | CCGG | 2 cut(s) | 233, 635 |
| MspR9I | CCNGG | 3 cut(s) | 233, 861, 912 |
| MvaI | CCWGG | 2 cut(s) | 861, 912 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 428 |
| NciI | CCSGG | 1 cut(s) | 233 |
| NdeII | GATC | 1 cut(s) | 483 |
| NlaIII | CATG | 5 cut(s) | 329, 556, 614, 695, 901 |
| NlaIV | GGNNCC | 2 cut(s) | 231, 272 |
| NmeAIII | GCCGAG | 1 cut(s) | 862 |
| NmuCI | GTSAC | 2 cut(s) | 382, 846 |
| NspI | RCATGY | 3 cut(s) | 556, 695, 901 |
| OliI | CACNNNNGTG | 1 cut(s) | 354 |
| PaeI | GCATGC | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 142 |
| PfeI | GAWTC | 1 cut(s) | 436 |
| PkrI | GCNGC | 1 cut(s) | 433 |
| PleI | GAGTC | 2 cut(s) | 302, 617 |
| PpsI | GAGTC | 2 cut(s) | 302, 617 |
| PpuMI | RGGWCCY | 1 cut(s) | 270 |
| Psp5II | RGGWCCY | 1 cut(s) | 270 |
| Psp6I | CCWGG | 2 cut(s) | 859, 910 |
| PspGI | CCWGG | 2 cut(s) | 859, 910 |
| PspN4I | GGNNCC | 2 cut(s) | 231, 272 |
| PspPI | GGNCC | 3 cut(s) | 229, 235, 270 |
| PspPPI | RGGWCCY | 1 cut(s) | 270 |
| RsaI | GTAC | 3 cut(s) | 294, 324, 795 |
| RsaNI | GTAC | 3 cut(s) | 293, 323, 794 |
| RseI | CAYNNNNRTG | 2 cut(s) | 354, 662 |
| SaqAI | TTAA | 3 cut(s) | 56, 209, 377 |
| SatI | GCNGC | 1 cut(s) | 432 |
| Sau3AI | GATC | 1 cut(s) | 483 |
| Sau96I | GGNCC | 3 cut(s) | 229, 235, 270 |
| ScaI | AGTACT | 1 cut(s) | 795 |
| SchI | GAGTC | 2 cut(s) | 302, 617 |
| ScrFI | CCNGG | 3 cut(s) | 233, 861, 912 |
| SduI | GDGCHC | 1 cut(s) | 581 |
| SfaNI | GCATC | 4 cut(s) | 255, 382, 661, 818 |
| SinI | GGWCC | 3 cut(s) | 229, 235, 270 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 354, 662 |
| SmlI | CTYRAG | 1 cut(s) | 831 |
| SmoI | CTYRAG | 1 cut(s) | 831 |
| SphI | GCATGC | 1 cut(s) | 556 |
| Sse9I | AATT | 3 cut(s) | 88, 151, 499 |
| SseBI | AGGCCT | 1 cut(s) | 142 |
| SsiI | CCGC | 1 cut(s) | 620 |
| SspMI | CTAG | 2 cut(s) | 144, 771 |
| StuI | AGGCCT | 1 cut(s) | 142 |
| StyD4I | CCNGG | 3 cut(s) | 231, 859, 910 |
| StyI | CCWWGG | 3 cut(s) | 396, 803, 842 |
| TaaI | ACNGT | 3 cut(s) | 356, 480, 748 |
| TaqI | TCGA | 1 cut(s) | 482 |
| TasI | AATT | 3 cut(s) | 88, 151, 499 |
| TatI | WGTACW | 3 cut(s) | 292, 322, 793 |
| TfiI | GAWTC | 1 cut(s) | 436 |
| Tru1I | TTAA | 3 cut(s) | 56, 209, 377 |
| Tru9I | TTAA | 3 cut(s) | 56, 209, 377 |
| TscAI | CASTG | 2 cut(s) | 361, 586 |
| TseFI | GTSAC | 2 cut(s) | 382, 846 |
| TseI | GCWGC | 1 cut(s) | 431 |
| Tsp45I | GTSAC | 2 cut(s) | 382, 846 |
| TspDTI | ATGAA | 2 cut(s) | 31, 342 |
| TspRI | CASTG | 2 cut(s) | 361, 586 |
| VneI | GTGCAC | 1 cut(s) | 577 |
| VpaK11BI | GGWCC | 3 cut(s) | 229, 235, 270 |
| XapI | RAATTY | 2 cut(s) | 88, 499 |
| XceI | RCATGY | 3 cut(s) | 556, 695, 901 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 867 |
| XspI | CTAG | 2 cut(s) | 144, 771 |
| ZrmI | AGTACT | 1 cut(s) | 795 |