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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 54 |
| AciI | CCGC | 4 cut(s) | 26, 113, 263, 432 |
| AclWI | GGATC | 2 cut(s) | 2, 15 |
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AcyI | GRCGYC | 1 cut(s) | 224 |
| AfaI | GTAC | 2 cut(s) | 190, 379 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 138 |
| AgsI | TTSAA | 1 cut(s) | 408 |
| AjiI | CACGTC | 2 cut(s) | 58, 185 |
| AjnI | CCWGG | 1 cut(s) | 352 |
| AluBI | AGCT | 1 cut(s) | 98 |
| AluI | AGCT | 1 cut(s) | 98 |
| AlwI | GGATC | 2 cut(s) | 2, 15 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| AoxI | GGCC | 1 cut(s) | 140 |
| ApeKI | GCWGC | 3 cut(s) | 29, 268, 334 |
| AspLEI | GCGC | 2 cut(s) | 55, 268 |
| AspS9I | GGNCC | 2 cut(s) | 140, 356 |
| AsuHPI | GGTGA | 4 cut(s) | 121, 358, 407, 505 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 1 cut(s) | 356 |
| AxyI | CCTNAGG | 1 cut(s) | 390 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 180, 213 |
| BamHI | GGATCC | 1 cut(s) | 7 |
| BbsI | GAAGAC | 1 cut(s) | 450 |
| BbvI | GCAGC | 3 cut(s) | 16, 280, 321 |
| BccI | CCATC | 4 cut(s) | 20, 103, 151, 223 |
| BciT130I | CCWGG | 1 cut(s) | 354 |
| BfaI | CTAG | 2 cut(s) | 23, 147 |
| BfmI | CTRYAG | 1 cut(s) | 93 |
| BisI | GCNGC | 5 cut(s) | 27, 30, 264, 269, 335 |
| BlpI | GCTNAGC | 1 cut(s) | 255 |
| BlsI | GCNGC | 5 cut(s) | 28, 31, 265, 270, 336 |
| Bme1390I | CCNGG | 1 cut(s) | 354 |
| Bme18I | GGWCC | 1 cut(s) | 356 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgBI | CACGTC | 2 cut(s) | 58, 185 |
| BmgT120I | GGNCC | 2 cut(s) | 140, 356 |
| BmiI | GGNNCC | 3 cut(s) | 9, 369, 387 |
| BmrFI | CCNGG | 1 cut(s) | 354 |
| BmsI | GCATC | 3 cut(s) | 124, 171, 310 |
| BpiI | GAAGAC | 1 cut(s) | 450 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 255 |
| BsaHI | GRCGYC | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 1 cut(s) | 381 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 138 |
| Bse1I | ACTGG | 2 cut(s) | 331, 455 |
| Bse21I | CCTNAGG | 1 cut(s) | 390 |
| BseBI | CCWGG | 1 cut(s) | 354 |
| BseDI | CCNNGG | 1 cut(s) | 381 |
| BseGI | GGATG | 1 cut(s) | 469 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BseMII | CTCAG | 1 cut(s) | 246 |
| BseNI | ACTGG | 2 cut(s) | 331, 455 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseXI | GCAGC | 3 cut(s) | 16, 280, 321 |
| BshFI | GGCC | 1 cut(s) | 142 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BsmI | GAATGC | 2 cut(s) | 109, 181 |
| BsnI | GGCC | 1 cut(s) | 142 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp143I | GATC | 3 cut(s) | 7, 61, 155 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 255 |
| BspACI | CCGC | 4 cut(s) | 26, 113, 263, 432 |
| BspANI | GGCC | 1 cut(s) | 142 |
| BspCNI | CTCAG | 1 cut(s) | 247 |
| BspLI | GGNNCC | 3 cut(s) | 9, 369, 387 |
| BspPI | GGATC | 2 cut(s) | 2, 15 |
| BsrI | ACTGG | 2 cut(s) | 331, 455 |
| BssECI | CCNNGG | 1 cut(s) | 381 |
| BssMI | GATC | 3 cut(s) | 7, 61, 155 |
| BssNI | GRCGYC | 1 cut(s) | 224 |
| BssT1I | CCWWGG | 1 cut(s) | 381 |
| Bst2UI | CCWGG | 1 cut(s) | 354 |
| Bst4CI | ACNGT | 2 cut(s) | 215, 481 |
| BstACI | GRCGYC | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 4 cut(s) | 115, 222, 261, 402 |
| BstDEI | CTNAG | 3 cut(s) | 255, 275, 390 |
| BstF5I | GGATG | 1 cut(s) | 469 |
| BstHHI | GCGC | 2 cut(s) | 55, 268 |
| BstKTI | GATC | 3 cut(s) | 10, 64, 158 |
| BstMBI | GATC | 3 cut(s) | 7, 61, 155 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 104, 260, 265 |
| BstNI | CCWGG | 1 cut(s) | 354 |
| BstSCI | CCNGG | 1 cut(s) | 352 |
| BstSFI | CTRYAG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 3 cut(s) | 16, 280, 321 |
| BstV2I | GAAGAC | 1 cut(s) | 450 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| Bsu36I | CCTNAGG | 1 cut(s) | 390 |
| BsuRI | GGCC | 1 cut(s) | 142 |
| BtgZI | GCGATG | 1 cut(s) | 122 |
| BtrI | CACGTC | 2 cut(s) | 58, 185 |
| BtsCI | GGATG | 1 cut(s) | 469 |
| Cac8I | GCNNGC | 4 cut(s) | 115, 222, 261, 402 |
| CfoI | GCGC | 2 cut(s) | 55, 268 |
| Cfr13I | GGNCC | 2 cut(s) | 140, 356 |
| CseI | GACGC | 1 cut(s) | 213 |
| Csp6I | GTAC | 2 cut(s) | 189, 378 |
| CviAII | CATG | 1 cut(s) | 510 |
| CviQI | GTAC | 2 cut(s) | 189, 378 |
| DdeI | CTNAG | 3 cut(s) | 255, 275, 390 |
| DpnI | GATC | 3 cut(s) | 9, 63, 157 |
| DpnII | GATC | 3 cut(s) | 7, 61, 155 |
| Eco130I | CCWWGG | 1 cut(s) | 381 |
| Eco47I | GGWCC | 1 cut(s) | 356 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| Eco81I | CCTNAGG | 1 cut(s) | 390 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| EcoRII | CCWGG | 1 cut(s) | 352 |
| EcoT14I | CCWWGG | 1 cut(s) | 381 |
| ErhI | CCWWGG | 1 cut(s) | 381 |
| FaeI | CATG | 1 cut(s) | 513 |
| FaiI | YATR | 3 cut(s) | 101, 318, 511 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 365, 397, 435, 467 |
| FatI | CATG | 1 cut(s) | 509 |
| FauI | CCCGC | 1 cut(s) | 106 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 30, 264, 269, 335 |
| FokI | GGATG | 1 cut(s) | 476 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 30, 264, 269, 335 |
| FspAI | RTGCGCAY | 1 cut(s) | 54 |
| FspBI | CTAG | 2 cut(s) | 23, 147 |
| FspI | TGCGCA | 1 cut(s) | 54 |
| GlaI | GCGC | 2 cut(s) | 54, 267 |
| GluI | GCNGC | 5 cut(s) | 27, 30, 264, 269, 335 |
| HaeIII | GGCC | 1 cut(s) | 142 |
| HgaI | GACGC | 1 cut(s) | 213 |
| HhaI | GCGC | 2 cut(s) | 55, 268 |
| Hin1I | GRCGYC | 1 cut(s) | 224 |
| Hin1II | CATG | 1 cut(s) | 513 |
| Hin6I | GCGC | 2 cut(s) | 53, 266 |
| HinP1I | GCGC | 2 cut(s) | 53, 266 |
| HinfI | GANTC | 1 cut(s) | 121 |
| HphI | GGTGA | 4 cut(s) | 121, 358, 407, 505 |
| Hpy166II | GTNNAC | 1 cut(s) | 211 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 313 |
| Hpy8I | GTNNAC | 1 cut(s) | 211 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 229 |
| HpyCH4III | ACNGT | 2 cut(s) | 215, 481 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 184 |
| HpyCH4V | TGCA | 5 cut(s) | 137, 179, 337, 419, 509 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 104, 260, 265 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 275, 390 |
| HpySE526I | ACGT | 2 cut(s) | 57, 184 |
| Hsp92I | GRCGYC | 1 cut(s) | 224 |
| Hsp92II | CATG | 1 cut(s) | 513 |
| HspAI | GCGC | 2 cut(s) | 53, 266 |
| Kzo9I | GATC | 3 cut(s) | 7, 61, 155 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 280, 321 |
| LweI | GCATC | 3 cut(s) | 124, 171, 310 |
| MaeI | CTAG | 2 cut(s) | 23, 147 |
| MaeII | ACGT | 2 cut(s) | 57, 184 |
| MalI | GATC | 3 cut(s) | 9, 63, 157 |
| MboI | GATC | 3 cut(s) | 7, 61, 155 |
| MboII | GAAGA | 2 cut(s) | 455, 495 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MluCI | AATT | 2 cut(s) | 285, 341 |
| MlyI | GAGTC | 1 cut(s) | 115 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 5 cut(s) | 64, 67, 92, 433, 484 |
| MspA1I | CMGCKG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 354 |
| Mva1269I | GAATGC | 2 cut(s) | 109, 181 |
| MvaI | CCWGG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 104, 260, 265 |
| NdeII | GATC | 3 cut(s) | 7, 61, 155 |
| NlaIII | CATG | 1 cut(s) | 513 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 369, 387 |
| NsbI | TGCGCA | 1 cut(s) | 54 |
| PctI | GAATGC | 2 cut(s) | 109, 181 |
| PkrI | GCNGC | 5 cut(s) | 28, 31, 265, 270, 336 |
| PleI | GAGTC | 1 cut(s) | 115 |
| PpsI | GAGTC | 1 cut(s) | 115 |
| Psp6I | CCWGG | 1 cut(s) | 352 |
| PspGI | CCWGG | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 369, 387 |
| PspPI | GGNCC | 2 cut(s) | 140, 356 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| RsaI | GTAC | 2 cut(s) | 190, 379 |
| RsaNI | GTAC | 2 cut(s) | 189, 378 |
| SatI | GCNGC | 5 cut(s) | 27, 30, 264, 269, 335 |
| Sau3AI | GATC | 3 cut(s) | 7, 61, 155 |
| Sau96I | GGNCC | 2 cut(s) | 140, 356 |
| SchI | GAGTC | 1 cut(s) | 115 |
| ScrFI | CCNGG | 1 cut(s) | 354 |
| SetI | ASST | 7 cut(s) | 60, 100, 187, 276, 364, 383, 476 |
| SfaNI | GCATC | 3 cut(s) | 124, 171, 310 |
| SfcI | CTRYAG | 1 cut(s) | 93 |
| SinI | GGWCC | 1 cut(s) | 356 |
| Sse9I | AATT | 2 cut(s) | 285, 341 |
| SsiI | CCGC | 4 cut(s) | 26, 113, 263, 432 |
| SspMI | CTAG | 2 cut(s) | 23, 147 |
| StyD4I | CCNGG | 1 cut(s) | 352 |
| StyI | CCWWGG | 1 cut(s) | 381 |
| TaaI | ACNGT | 2 cut(s) | 215, 481 |
| TaiI | ACGT | 2 cut(s) | 60, 187 |
| TaqI | TCGA | 3 cut(s) | 60, 154, 227 |
| TasI | AATT | 2 cut(s) | 285, 341 |
| TauI | GCSGC | 2 cut(s) | 29, 266 |
| TseI | GCWGC | 3 cut(s) | 29, 268, 334 |
| TspDTI | ATGAA | 1 cut(s) | 116 |
| VpaK11BI | GGWCC | 1 cut(s) | 356 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 323, 455 |
| XspI | CTAG | 2 cut(s) | 23, 147 |