Rmu_sc0002586.1_g000033

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002586.1
OG0000049
Physical Location & Seq
Forward (+)
125206 .. 126889
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002586.1_g000033.1.cds

Sequence Viewer

Length: 1269 bp
atgtctaaattaagagacatcaggaatggtgctgaggcggcactgcttcaggcagatttgagtctggtggctttaggggctgcaggggctgaggcgcttcaggatggtccggcggaggaggtttccttgaatatgttgaagacctgggtggtcgtgaagggcctctctttggctctgagaaacaagatggctctagccatggtgggtgcctcgctagggaggatggttcgtgtggatctgaatgctcttaaaaggaaagaagaagaacagaggatcaagattgtgtttgatgtttgttgtcgagttcgtgtctggaaggtttttaagttttctccaattgtgaaaccggagttatctttcatctttgagaaggttaagggagtttgtcgggattgtggtttgttctgtcatgatgcaaccggttgtgataagctattggttcgagagaaggaggaactacaggctaggccaccggcgttagctatggccgggttgtctttgacctcggggaaagaggatggtcattccttgactgatagggccttggaattgggcaacaccgttctagtgggtagagagattgggtcgggtttttctgggaatggagcagaggctgtgccgtttgggaagggaggccatgcaacgccgacaactattggtttcatgtcctccatgatgttgggaatacctaggcttctggtcccaggtttgaatgatatccaccatatgggggatttgaacataagtgttccttttctcgctactggaaaggagatagactcagggtcgtcggctgttatccccatgttaactgagataggtaaagaggcggctagagtggagttttcctccatgcaaatggtgccggcgggaaggaaaaggaaggttgtgtctcatttggatcgttttgggaagaagtacttagcttttcctgattccacgctggaggttggtgagagtgtctccttgatcttacaacacaagaatggtaagctactggtttcacccaagaagaagaaaggcggacatcccaagggtagtaaaaataaggttaagaatacagatgaacaagaagtgaagaagatacacaagtataagcgtagggggaagactttgagttttgactcaataactgaagcactggctactgtggctgttggggagctaggtcttctgcagctgggggaggatgaggctggtaaggagtttcctgctctagagggagaaatggaaggtgacttgtcaccttctagggctagtttaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

422

Amino Acids

45.46

Weight (kDa)

9.11

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 862
AccB7I CCANNNNNTGG 1 cut(s) 727
AciI CCGC 5 cut(s) 38, 113, 830, 869, 1023
AclWI GGATC 3 cut(s) 243, 281, 909
AcoI YGGCCR 1 cut(s) 486
AcuI CTGAAG 3 cut(s) 32, 83, 1155
AfaI GTAC 1 cut(s) 920
AfiI CCNNNNNNNGG 4 cut(s) 169, 216, 727, 730
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 4 cut(s) 130, 139, 712, 739
AhdI GACNNNNNGTC 1 cut(s) 784
AjnI CCWGG 2 cut(s) 143, 703
AluBI AGCT 6 cut(s) 433, 482, 926, 994, 1165, 1180
AluI AGCT 6 cut(s) 433, 482, 926, 994, 1165, 1180
Alw26I GTCTC 3 cut(s) 9, 897, 967
AlwI GGATC 3 cut(s) 243, 281, 909
AlwNI CAGNNNCTG 2 cut(s) 89, 614
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 5 cut(s) 160, 467, 486, 540, 634
ApeKI GCWGC 2 cut(s) 80, 1177
AsiGI ACCGGT 1 cut(s) 419
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 4 cut(s) 107, 160, 540, 700
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 965, 996, 1236, 1247
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 2 cut(s) 107, 700
AvrII CCTAGG 1 cut(s) 689
BaeI ACNNNNGTAYC 2 cut(s) 1076, 1109
BanI GGYRCC 2 cut(s) 206, 862
BbsI GAAGAC 3 cut(s) 146, 1115, 1163
BbvCI CCTCAGC 2 cut(s) 33, 90
BbvI GCAGC 2 cut(s) 67, 1189
BccI CCATC 4 cut(s) 98, 181, 217, 512
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 2 cut(s) 145, 705
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 3 cut(s) 9, 897, 967
BfmI CTRYAG 3 cut(s) 81, 458, 1175
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 4 cut(s) 39, 81, 831, 1178
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 4 cut(s) 40, 82, 832, 1179
BmcAI AGTACT 1 cut(s) 920
Bme1390I CCNGG 3 cut(s) 145, 490, 705
Bme18I GGWCC 2 cut(s) 107, 700
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 4 cut(s) 107, 160, 540, 700
BmiI GGNNCC 3 cut(s) 208, 702, 864
BmrFI CCNGG 3 cut(s) 145, 490, 705
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 3 cut(s) 146, 1115, 1163
BplI GAGNNNNNCTC 6 cut(s) 764, 796, 833, 865, 947, 979
BpmI CTGGAG 1 cut(s) 965
Bpu10I CCTNAGC 2 cut(s) 33, 90
BpuMI CCSGG 1 cut(s) 490
BsaJI CCNNGG 7 cut(s) 144, 198, 504, 543, 689, 703, 1032
BsaWI WCCGGW 2 cut(s) 346, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 216, 727, 730
Bse118I RCCGGY 3 cut(s) 419, 472, 865
Bse1I ACTGG 3 cut(s) 769, 1002, 1146
BseBI CCWGG 2 cut(s) 145, 705
BseDI CCNNGG 7 cut(s) 144, 198, 504, 543, 689, 703, 1032
BseGI GGATG 5 cut(s) 109, 228, 523, 1027, 1195
BseLI CCNNNNNNNGG 4 cut(s) 169, 216, 727, 730
BseMII CTCAG 5 cut(s) 24, 81, 167, 795, 804
BseNI ACTGG 3 cut(s) 769, 1002, 1146
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 67, 1189
BseYI CCCAGC 1 cut(s) 1180
BshFI GGCC 5 cut(s) 162, 469, 488, 542, 636
BshNI GGYRCC 2 cut(s) 206, 862
BshTI ACCGGT 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 6 cut(s) 110, 347, 420, 473, 489, 866
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 4 cut(s) 169, 216, 727, 730
BsmAI GTCTC 3 cut(s) 9, 897, 967
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 5 cut(s) 162, 469, 488, 542, 636
BsoBI CYCGRG 1 cut(s) 505
Bsp143I GATC 4 cut(s) 235, 273, 901, 969
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 5 cut(s) 38, 113, 830, 869, 1023
BspANI GGCC 5 cut(s) 162, 469, 488, 542, 636
BspCNI CTCAG 5 cut(s) 25, 82, 168, 794, 805
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 208, 702, 864
BspMAI CTGCAG 2 cut(s) 85, 1179
BspPI GGATC 3 cut(s) 243, 281, 909
BspT107I GGYRCC 2 cut(s) 206, 862
BsrFI RCCGGY 3 cut(s) 419, 472, 865
BsrI ACTGG 3 cut(s) 769, 1002, 1146
BssAI RCCGGY 3 cut(s) 419, 472, 865
BssECI CCNNGG 7 cut(s) 144, 198, 504, 543, 689, 703, 1032
BssMI GATC 4 cut(s) 235, 273, 901, 969
BssT1I CCWWGG 4 cut(s) 198, 543, 689, 1032
Bst2UI CCWGG 2 cut(s) 145, 705
Bst4CI ACNGT 2 cut(s) 562, 1150
BstAPI GCANNNNNTGC 1 cut(s) 862
BstC8I GCNNGC 1 cut(s) 867
BstDEI CTNAG 6 cut(s) 33, 90, 176, 781, 813, 922
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 5 cut(s) 109, 228, 523, 1027, 1195
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 4 cut(s) 238, 276, 904, 972
BstMAI GTCTC 3 cut(s) 9, 897, 967
BstMBI GATC 4 cut(s) 235, 273, 901, 969
BstMWI GCNNNNNNNGC 5 cut(s) 38, 77, 86, 862, 1151
BstNI CCWGG 2 cut(s) 145, 705
BstSCI CCNGG 3 cut(s) 143, 488, 703
BstSFI CTRYAG 3 cut(s) 81, 458, 1175
BstV1I GCAGC 2 cut(s) 67, 1189
BstV2I GAAGAC 3 cut(s) 146, 1115, 1163
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 2 cut(s) 679, 859
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 5 cut(s) 162, 469, 488, 542, 636
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 5 cut(s) 109, 228, 523, 1027, 1195
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 1139
Cac8I GCNNGC 1 cut(s) 867
CaiI CAGNNNCTG 2 cut(s) 89, 614
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 97
Cfr10I RCCGGY 3 cut(s) 419, 472, 865
Cfr13I GGNCC 4 cut(s) 107, 160, 540, 700
Csp6I GTAC 1 cut(s) 919
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 7 cut(s) 199, 410, 638, 664, 673, 805, 853
CviQI GTAC 1 cut(s) 919
DdeI CTNAG 6 cut(s) 33, 90, 176, 781, 813, 922
DpnI GATC 4 cut(s) 237, 275, 903, 971
DpnII GATC 4 cut(s) 235, 273, 901, 969
DriI GACNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 784
EciI GGCGGA 2 cut(s) 128, 1038
Eco130I CCWWGG 4 cut(s) 198, 543, 689, 1032
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 107, 700
Eco57I CTGAAG 3 cut(s) 32, 83, 1155
Eco88I CYCGRG 1 cut(s) 505
EcoO109I RGGNCCY 2 cut(s) 160, 540
EcoRII CCWGG 2 cut(s) 143, 703
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 4 cut(s) 198, 543, 689, 1032
ErhI CCWWGG 4 cut(s) 198, 543, 689, 1032
FaeI CATG 7 cut(s) 202, 413, 641, 667, 676, 808, 856
FalI AAGNNNNNCTT 4 cut(s) 736, 768, 905, 937
FaqI GGGAC 1 cut(s) 686
FatI CATG 7 cut(s) 198, 409, 637, 663, 672, 804, 852
FauI CCCGC 1 cut(s) 862
FauNDI CATATG 1 cut(s) 726
Fnu4HI GCNGC 4 cut(s) 39, 81, 831, 1178
FokI GGATG 5 cut(s) 116, 235, 530, 1014, 1202
Fsp4HI GCNGC 4 cut(s) 39, 81, 831, 1178
GlaI GCGC 1 cut(s) 96
GluI GCNGC 4 cut(s) 39, 81, 831, 1178
GsaI CCCAGC 1 cut(s) 1184
GsuI CTGGAG 1 cut(s) 965
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 5 cut(s) 162, 469, 488, 542, 636
HapII CCGG 6 cut(s) 110, 347, 420, 473, 489, 866
HhaI GCGC 1 cut(s) 97
Hin1II CATG 7 cut(s) 202, 413, 641, 667, 676, 808, 856
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HinfI GANTC 4 cut(s) 61, 779, 935, 1124
HpaI GTTAAC 1 cut(s) 810
HpaII CCGG 6 cut(s) 110, 347, 420, 473, 489, 866
HphI GGTGA 4 cut(s) 965, 996, 1236, 1247
Hpy166II GTNNAC 1 cut(s) 810
Hpy188I TCNGA 2 cut(s) 177, 240
Hpy8I GTNNAC 1 cut(s) 810
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 9 cut(s) 151, 310, 364, 442, 622, 867, 877, 1226, 1257
HpyCH4III ACNGT 2 cut(s) 562, 1150
HpyCH4V TGCA 5 cut(s) 83, 416, 641, 856, 1177
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 77, 86, 862, 1151
HpyF3I CTNAG 6 cut(s) 33, 90, 176, 781, 813, 922
Hsp92II CATG 7 cut(s) 202, 413, 641, 667, 676, 808, 856
HspAI GCGC 1 cut(s) 95
KroI GCCGGC 1 cut(s) 865
KroNI GCCGGC 1 cut(s) 867
KspAI GTTAAC 1 cut(s) 810
Kzo9I GATC 4 cut(s) 235, 273, 901, 969
LmnI GCTCC 2 cut(s) 605, 1162
Lsp1109I GCAGC 2 cut(s) 67, 1189
LweI GCATC 1 cut(s) 403
MaeIII GTNAC 2 cut(s) 1235, 1242
MalI GATC 4 cut(s) 237, 275, 903, 971
MboI GATC 4 cut(s) 235, 273, 901, 969
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 235
MluCI AATT 4 cut(s) 8, 336, 548, 1263
MlyI GAGTC 3 cut(s) 70, 773, 1118
MroNI GCCGGC 1 cut(s) 865
MseI TTAA 8 cut(s) 11, 249, 324, 375, 809, 1053, 1262, 1267
MslI CAYNNNNRTG 2 cut(s) 857, 984
MspA1I CMGCKG 1 cut(s) 1180
MspI CCGG 6 cut(s) 110, 347, 420, 473, 489, 866
MspR9I CCNGG 3 cut(s) 145, 490, 705
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 145, 705
MwoI GCNNNNNNNGC 5 cut(s) 38, 77, 86, 862, 1151
NaeI GCCGGC 1 cut(s) 867
NciI CCSGG 1 cut(s) 490
NcoI CCATGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 726
NdeII GATC 4 cut(s) 235, 273, 901, 969
NgoMIV GCCGGC 1 cut(s) 865
NlaIII CATG 7 cut(s) 202, 413, 641, 667, 676, 808, 856
NlaIV GGNNCC 3 cut(s) 208, 702, 864
NmuCI GTSAC 2 cut(s) 1235, 1242
PagI TCATGA 1 cut(s) 409
PctI GAATGC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 727
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 4 cut(s) 40, 82, 832, 1179
PleI GAGTC 3 cut(s) 69, 773, 1118
PpsI GAGTC 3 cut(s) 69, 773, 1118
Psp6I CCWGG 2 cut(s) 143, 703
PspFI CCCAGC 1 cut(s) 1180
PspGI CCWGG 2 cut(s) 143, 703
PspN4I GGNNCC 3 cut(s) 208, 702, 864
PspPI GGNCC 4 cut(s) 107, 160, 540, 700
PstI CTGCAG 2 cut(s) 85, 1179
PstNI CAGNNNCTG 2 cut(s) 89, 614
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 1180
RsaI GTAC 1 cut(s) 920
RsaNI GTAC 1 cut(s) 919
RseI CAYNNNNRTG 2 cut(s) 857, 984
SaqAI TTAA 8 cut(s) 11, 249, 324, 375, 809, 1053, 1262, 1267
SatI GCNGC 4 cut(s) 39, 81, 831, 1178
Sau3AI GATC 4 cut(s) 235, 273, 901, 969
Sau96I GGNCC 4 cut(s) 107, 160, 540, 700
ScaI AGTACT 1 cut(s) 920
SchI GAGTC 3 cut(s) 70, 773, 1118
ScrFI CCNGG 3 cut(s) 145, 490, 705
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 3 cut(s) 81, 458, 1175
SgrAI CRCCGGYG 1 cut(s) 472
SinI GGWCC 2 cut(s) 107, 700
SmiMI CAYNNNNRTG 2 cut(s) 857, 984
Sse9I AATT 4 cut(s) 8, 336, 548, 1263
SsiI CCGC 5 cut(s) 38, 113, 830, 869, 1023
StyD4I CCNGG 3 cut(s) 143, 488, 703
StyI CCWWGG 4 cut(s) 198, 543, 689, 1032
TaaI ACNGT 2 cut(s) 562, 1150
TaqI TCGA 2 cut(s) 301, 442
TasI AATT 4 cut(s) 8, 336, 548, 1263
TatI WGTACW 1 cut(s) 918
TauI GCSGC 2 cut(s) 41, 833
TfiI GAWTC 1 cut(s) 935
Tru1I TTAA 8 cut(s) 11, 249, 324, 375, 809, 1053, 1262, 1267
Tru9I TTAA 8 cut(s) 11, 249, 324, 375, 809, 1053, 1262, 1267
TscAI CASTG 2 cut(s) 48, 1146
TseFI GTSAC 2 cut(s) 1235, 1242
TseI GCWGC 2 cut(s) 80, 1177
Tsp45I GTSAC 2 cut(s) 1235, 1242
TspDTI ATGAA 3 cut(s) 349, 652, 1080
TspRI CASTG 2 cut(s) 48, 1146
Van91I CCANNNNNTGG 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 107, 700
XbaI TCTAGA 1 cut(s) 1216
XmaJI CCTAGG 1 cut(s) 689
ZrmI AGTACT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.