Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 64 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 424, 1251 |
| AccII | CGCG | 2 cut(s) | 310, 1558 |
| AclWI | GGATC | 2 cut(s) | 1220, 1399 |
| AcoI | YGGCCR | 1 cut(s) | 869 |
| AcsI | RAATTY | 5 cut(s) | 327, 716, 826, 1279, 1303 |
| AcuI | CTGAAG | 4 cut(s) | 218, 842, 1260, 1505 |
| AfaI | GTAC | 3 cut(s) | 353, 599, 652 |
| AflII | CTTAAG | 1 cut(s) | 1535 |
| AflIII | ACRYGT | 2 cut(s) | 63, 1265 |
| AgeI | ACCGGT | 2 cut(s) | 406, 723 |
| AgsI | TTSAA | 5 cut(s) | 721, 742, 961, 1303, 1466 |
| AjnI | CCWGG | 2 cut(s) | 53, 918 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 743, 775, 846, 878 |
| AluBI | AGCT | 7 cut(s) | 40, 483, 584, 592, 862, 896, 1462 |
| AluI | AGCT | 7 cut(s) | 40, 483, 584, 592, 862, 896, 1462 |
| AlwI | GGATC | 2 cut(s) | 1220, 1399 |
| Ama87I | CYCGRG | 1 cut(s) | 1287 |
| AoxI | GGCC | 5 cut(s) | 162, 771, 869, 1040, 1097 |
| ApeKI | GCWGC | 2 cut(s) | 893, 1031 |
| ApoI | RAATTY | 5 cut(s) | 327, 716, 826, 1279, 1303 |
| AsiGI | ACCGGT | 2 cut(s) | 406, 723 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1282 |
| AspLEI | GCGC | 3 cut(s) | 158, 288, 310 |
| AspS9I | GGNCC | 2 cut(s) | 162, 1097 |
| AsuHPI | GGTGA | 6 cut(s) | 88, 701, 997, 1127, 1195, 1329 |
| AvaI | CYCGRG | 1 cut(s) | 1287 |
| BalI | TGGCCA | 1 cut(s) | 871 |
| BanII | GRGCYC | 1 cut(s) | 1421 |
| BbsI | GAAGAC | 1 cut(s) | 949 |
| BbvI | GCAGC | 2 cut(s) | 905, 1043 |
| BccI | CCATC | 4 cut(s) | 85, 338, 383, 422 |
| BciT130I | CCWGG | 2 cut(s) | 55, 920 |
| BclI | TGATCA | 2 cut(s) | 183, 336 |
| BfaI | CTAG | 5 cut(s) | 132, 540, 567, 1070, 1311 |
| BfoI | RGCGCY | 1 cut(s) | 159 |
| BfrI | CTTAAG | 1 cut(s) | 1535 |
| BisI | GCNGC | 2 cut(s) | 894, 1032 |
| BlsI | GCNGC | 2 cut(s) | 895, 1033 |
| BmcAI | AGTACT | 2 cut(s) | 599, 652 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 920 |
| BmeT110I | CYCGRG | 1 cut(s) | 1287 |
| BmgT120I | GGNCC | 2 cut(s) | 162, 1097 |
| BmiI | GGNNCC | 4 cut(s) | 163, 267, 402, 932 |
| BmrFI | CCNGG | 2 cut(s) | 55, 920 |
| BmsI | GCATC | 1 cut(s) | 1453 |
| BpiI | GAAGAC | 1 cut(s) | 949 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 126, 158 |
| BpmI | CTGGAG | 3 cut(s) | 614, 848, 1469 |
| BpuEI | CTTGAG | 1 cut(s) | 608 |
| BsaAI | YACGTR | 1 cut(s) | 1508 |
| BsaJI | CCNNGG | 3 cut(s) | 53, 844, 1011 |
| BsaWI | WCCGGW | 3 cut(s) | 406, 723, 927 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 846, 876 |
| Bse118I | RCCGGY | 3 cut(s) | 406, 723, 1099 |
| Bse1I | ACTGG | 3 cut(s) | 332, 865, 1261 |
| Bse3DI | GCAATG | 4 cut(s) | 281, 903, 1179, 1549 |
| BseBI | CCWGG | 2 cut(s) | 55, 920 |
| BseDI | CCNNGG | 3 cut(s) | 53, 844, 1011 |
| BseGI | GGATG | 4 cut(s) | 96, 167, 433, 610 |
| BseMI | GCAATG | 4 cut(s) | 281, 903, 1179, 1549 |
| BseMII | CTCAG | 2 cut(s) | 594, 1050 |
| BseNI | ACTGG | 3 cut(s) | 332, 865, 1261 |
| BseXI | GCAGC | 2 cut(s) | 905, 1043 |
| BseYI | CCCAGC | 1 cut(s) | 158 |
| Bsh1236I | CGCG | 2 cut(s) | 310, 1558 |
| BshFI | GGCC | 5 cut(s) | 164, 773, 871, 1042, 1099 |
| BshTI | ACCGGT | 2 cut(s) | 406, 723 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1287 |
| BsiSI | CCGG | 4 cut(s) | 407, 724, 928, 1100 |
| BslFI | GGGAC | 6 cut(s) | 52, 445, 555, 571, 788, 869 |
| BsmFI | GGGAC | 6 cut(s) | 52, 445, 555, 571, 788, 869 |
| BsnI | GGCC | 5 cut(s) | 164, 773, 871, 1042, 1099 |
| BsoBI | CYCGRG | 1 cut(s) | 1287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1421 |
| Bsp143I | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| BspANI | GGCC | 5 cut(s) | 164, 773, 871, 1042, 1099 |
| BspCNI | CTCAG | 2 cut(s) | 593, 1051 |
| BspFNI | CGCG | 2 cut(s) | 310, 1558 |
| BspLI | GGNNCC | 4 cut(s) | 163, 267, 402, 932 |
| BspPI | GGATC | 2 cut(s) | 1220, 1399 |
| BspTI | CTTAAG | 1 cut(s) | 1535 |
| BsrDI | GCAATG | 4 cut(s) | 281, 903, 1179, 1549 |
| BsrFI | RCCGGY | 3 cut(s) | 406, 723, 1099 |
| BsrI | ACTGG | 3 cut(s) | 332, 865, 1261 |
| BssAI | RCCGGY | 3 cut(s) | 406, 723, 1099 |
| BssECI | CCNNGG | 3 cut(s) | 53, 844, 1011 |
| BssMI | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| BssT1I | CCWWGG | 1 cut(s) | 1011 |
| Bst2UI | CCWGG | 2 cut(s) | 55, 920 |
| Bst4CI | ACNGT | 4 cut(s) | 152, 655, 1024, 1038 |
| BstAFI | CTTAAG | 1 cut(s) | 1535 |
| BstBAI | YACGTR | 1 cut(s) | 1508 |
| BstC8I | GCNNGC | 2 cut(s) | 980, 1088 |
| BstDEI | CTNAG | 6 cut(s) | 435, 479, 524, 580, 647, 1059 |
| BstEII | GGTNACC | 2 cut(s) | 94, 137 |
| BstF5I | GGATG | 4 cut(s) | 96, 167, 433, 610 |
| BstFNI | CGCG | 2 cut(s) | 310, 1558 |
| BstH2I | RGCGCY | 1 cut(s) | 159 |
| BstHHI | GCGC | 3 cut(s) | 158, 288, 310 |
| BstKTI | GATC | 5 cut(s) | 186, 339, 1228, 1407, 1581 |
| BstMBI | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 868, 1096, 1555 |
| BstNI | CCWGG | 2 cut(s) | 55, 920 |
| BstNSI | RCATGY | 4 cut(s) | 14, 67, 1090, 1269 |
| BstPI | GGTNACC | 2 cut(s) | 94, 137 |
| BstSCI | CCNGG | 2 cut(s) | 53, 918 |
| BstUI | CGCG | 2 cut(s) | 310, 1558 |
| BstV1I | GCAGC | 2 cut(s) | 905, 1043 |
| BstV2I | GAAGAC | 1 cut(s) | 949 |
| BstX2I | RGATCY | 1 cut(s) | 1404 |
| BstYI | RGATCY | 1 cut(s) | 1404 |
| BsuRI | GGCC | 5 cut(s) | 164, 773, 871, 1042, 1099 |
| BtsCI | GGATG | 4 cut(s) | 96, 167, 433, 610 |
| BtsI | GCAGTG | 1 cut(s) | 1107 |
| BtsIMutI | CAGTG | 5 cut(s) | 339, 872, 975, 1043, 1107 |
| Cac8I | GCNNGC | 2 cut(s) | 980, 1088 |
| CfoI | GCGC | 3 cut(s) | 158, 288, 310 |
| Cfr10I | RCCGGY | 3 cut(s) | 406, 723, 1099 |
| Cfr13I | GGNCC | 2 cut(s) | 162, 1097 |
| CseI | GACGC | 1 cut(s) | 1159 |
| Csp6I | GTAC | 3 cut(s) | 352, 598, 651 |
| CspAI | ACCGGT | 2 cut(s) | 406, 723 |
| CviAII | CATG | 8 cut(s) | 11, 64, 550, 1087, 1178, 1266, 1274, 1414 |
| CviQI | GTAC | 3 cut(s) | 352, 598, 651 |
| DdeI | CTNAG | 6 cut(s) | 435, 479, 524, 580, 647, 1059 |
| DpnI | GATC | 5 cut(s) | 185, 338, 1227, 1406, 1580 |
| DpnII | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 64 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 869 |
| Eco130I | CCWWGG | 1 cut(s) | 1011 |
| Eco24I | GRGCYC | 1 cut(s) | 1421 |
| Eco32I | GATATC | 1 cut(s) | 1296 |
| Eco57I | CTGAAG | 4 cut(s) | 218, 842, 1260, 1505 |
| Eco88I | CYCGRG | 1 cut(s) | 1287 |
| Eco91I | GGTNACC | 2 cut(s) | 94, 137 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| EcoO65I | GGTNACC | 2 cut(s) | 94, 137 |
| EcoRI | GAATTC | 1 cut(s) | 826 |
| EcoRII | CCWGG | 2 cut(s) | 53, 918 |
| EcoRV | GATATC | 1 cut(s) | 1296 |
| EcoT14I | CCWWGG | 1 cut(s) | 1011 |
| EcoT22I | ATGCAT | 1 cut(s) | 1179 |
| EcoT38I | GRGCYC | 1 cut(s) | 1421 |
| ErhI | CCWWGG | 1 cut(s) | 1011 |
| FaeI | CATG | 8 cut(s) | 14, 67, 553, 1090, 1181, 1269, 1277, 1417 |
| FaqI | GGGAC | 6 cut(s) | 52, 445, 555, 571, 788, 869 |
| FatI | CATG | 8 cut(s) | 10, 63, 549, 1086, 1177, 1265, 1273, 1413 |
| FbaI | TGATCA | 2 cut(s) | 183, 336 |
| Fnu4HI | GCNGC | 2 cut(s) | 894, 1032 |
| FokI | GGATG | 4 cut(s) | 103, 154, 440, 617 |
| FriOI | GRGCYC | 1 cut(s) | 1421 |
| Fsp4HI | GCNGC | 2 cut(s) | 894, 1032 |
| FspBI | CTAG | 5 cut(s) | 132, 540, 567, 1070, 1311 |
| GlaI | GCGC | 3 cut(s) | 157, 287, 309 |
| GluI | GCNGC | 2 cut(s) | 894, 1032 |
| GsaI | CCCAGC | 1 cut(s) | 162 |
| GsuI | CTGGAG | 3 cut(s) | 614, 848, 1469 |
| HaeII | RGCGCY | 1 cut(s) | 159 |
| HaeIII | GGCC | 5 cut(s) | 164, 773, 871, 1042, 1099 |
| HapII | CCGG | 4 cut(s) | 407, 724, 928, 1100 |
| HgaI | GACGC | 1 cut(s) | 1159 |
| HhaI | GCGC | 3 cut(s) | 158, 288, 310 |
| Hin1II | CATG | 8 cut(s) | 14, 67, 553, 1090, 1181, 1269, 1277, 1417 |
| Hin6I | GCGC | 3 cut(s) | 156, 286, 308 |
| HinP1I | GCGC | 3 cut(s) | 156, 286, 308 |
| HincII | GTYRAC | 1 cut(s) | 451 |
| HindII | GTYRAC | 1 cut(s) | 451 |
| HindIII | AAGCTT | 1 cut(s) | 38 |
| HinfI | GANTC | 4 cut(s) | 563, 608, 954, 1481 |
| HpaI | GTTAAC | 1 cut(s) | 451 |
| HpaII | CCGG | 4 cut(s) | 407, 724, 928, 1100 |
| HphI | GGTGA | 6 cut(s) | 88, 701, 997, 1127, 1195, 1329 |
| Hpy166II | GTNNAC | 2 cut(s) | 451, 762 |
| Hpy188I | TCNGA | 5 cut(s) | 674, 790, 1213, 1500, 1524 |
| Hpy188III | TCNNGA | 8 cut(s) | 296, 587, 707, 796, 823, 1050, 1287, 1448 |
| Hpy8I | GTNNAC | 2 cut(s) | 451, 762 |
| Hpy99I | CGWCG | 1 cut(s) | 1153 |
| HpyAV | CCTTC | 9 cut(s) | 59, 209, 391, 511, 583, 844, 994, 1218, 1460 |
| HpyCH4III | ACNGT | 4 cut(s) | 152, 655, 1024, 1038 |
| HpyCH4IV | ACGT | 2 cut(s) | 693, 1507 |
| HpyCH4V | TGCA | 6 cut(s) | 10, 908, 1031, 1126, 1177, 1444 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 868, 1096, 1555 |
| HpyF3I | CTNAG | 6 cut(s) | 435, 479, 524, 580, 647, 1059 |
| HpySE526I | ACGT | 2 cut(s) | 693, 1507 |
| Hsp92II | CATG | 8 cut(s) | 14, 67, 553, 1090, 1181, 1269, 1277, 1417 |
| HspAI | GCGC | 3 cut(s) | 156, 286, 308 |
| Ksp22I | TGATCA | 2 cut(s) | 183, 336 |
| KspAI | GTTAAC | 1 cut(s) | 451 |
| Kzo9I | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| LmnI | GCTCC | 3 cut(s) | 400, 867, 1158 |
| Lsp1109I | GCAGC | 2 cut(s) | 905, 1043 |
| LweI | GCATC | 1 cut(s) | 1453 |
| MaeI | CTAG | 5 cut(s) | 132, 540, 567, 1070, 1311 |
| MaeII | ACGT | 2 cut(s) | 693, 1507 |
| MalI | GATC | 5 cut(s) | 185, 338, 1227, 1406, 1580 |
| MboI | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| MboII | GAAGA | 4 cut(s) | 949, 1275, 1511, 1579 |
| MflI | RGATCY | 1 cut(s) | 1404 |
| MhlI | GDGCHC | 1 cut(s) | 1421 |
| MlsI | TGGCCA | 1 cut(s) | 871 |
| MluCI | AATT | 9 cut(s) | 327, 420, 696, 716, 815, 826, 1246, 1279, 1303 |
| MluNI | TGGCCA | 1 cut(s) | 871 |
| MlyI | GAGTC | 2 cut(s) | 602, 963 |
| MmeI | TCCRAC | 3 cut(s) | 211, 929, 1413 |
| Mox20I | TGGCCA | 1 cut(s) | 871 |
| Mph1103I | ATGCAT | 1 cut(s) | 1179 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1282 |
| MscI | TGGCCA | 1 cut(s) | 871 |
| MseI | TTAA | 8 cut(s) | 450, 633, 1019, 1307, 1355, 1395, 1424, 1536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1161 |
| Msp20I | TGGCCA | 1 cut(s) | 871 |
| MspCI | CTTAAG | 1 cut(s) | 1535 |
| MspI | CCGG | 4 cut(s) | 407, 724, 928, 1100 |
| MspR9I | CCNGG | 2 cut(s) | 55, 920 |
| MvaI | CCWGG | 2 cut(s) | 55, 920 |
| MvnI | CGCG | 2 cut(s) | 310, 1558 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 868, 1096, 1555 |
| NdeII | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| NlaIII | CATG | 8 cut(s) | 14, 67, 553, 1090, 1181, 1269, 1277, 1417 |
| NlaIV | GGNNCC | 4 cut(s) | 163, 267, 402, 932 |
| NmeAIII | GCCGAG | 1 cut(s) | 869 |
| NmuCI | GTSAC | 6 cut(s) | 94, 205, 689, 778, 1003, 1329 |
| NsiI | ATGCAT | 1 cut(s) | 1179 |
| NspI | RCATGY | 4 cut(s) | 14, 67, 1090, 1269 |
| PaeI | GCATGC | 1 cut(s) | 1090 |
| PaeR7I | CTCGAG | 1 cut(s) | 1287 |
| PciI | ACATGT | 2 cut(s) | 63, 1265 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1562 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1282 |
| PfeI | GAWTC | 2 cut(s) | 563, 1481 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 424, 1251 |
| PfoI | TCCNGGA | 1 cut(s) | 918 |
| PinAI | ACCGGT | 2 cut(s) | 406, 723 |
| PkrI | GCNGC | 2 cut(s) | 895, 1033 |
| PleI | GAGTC | 2 cut(s) | 602, 962 |
| PpsI | GAGTC | 2 cut(s) | 602, 962 |
| Ppu21I | YACGTR | 1 cut(s) | 1508 |
| PscI | ACATGT | 2 cut(s) | 63, 1265 |
| Psp6I | CCWGG | 2 cut(s) | 53, 918 |
| PspEI | GGTNACC | 2 cut(s) | 94, 137 |
| PspFI | CCCAGC | 1 cut(s) | 158 |
| PspGI | CCWGG | 2 cut(s) | 53, 918 |
| PspN4I | GGNNCC | 4 cut(s) | 163, 267, 402, 932 |
| PspPI | GGNCC | 2 cut(s) | 162, 1097 |
| PsuI | RGATCY | 1 cut(s) | 1404 |
| RsaI | GTAC | 3 cut(s) | 353, 599, 652 |
| RsaNI | GTAC | 3 cut(s) | 352, 598, 651 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1161 |
| SaqAI | TTAA | 8 cut(s) | 450, 633, 1019, 1307, 1355, 1395, 1424, 1536 |
| SatI | GCNGC | 2 cut(s) | 894, 1032 |
| Sau3AI | GATC | 5 cut(s) | 183, 336, 1225, 1404, 1578 |
| Sau96I | GGNCC | 2 cut(s) | 162, 1097 |
| ScaI | AGTACT | 2 cut(s) | 599, 652 |
| SchI | GAGTC | 2 cut(s) | 602, 963 |
| ScrFI | CCNGG | 2 cut(s) | 55, 920 |
| SduI | GDGCHC | 1 cut(s) | 1421 |
| SfaNI | GCATC | 1 cut(s) | 1453 |
| Sfr274I | CTCGAG | 1 cut(s) | 1287 |
| SgrAI | CRCCGGYG | 1 cut(s) | 406 |
| SlaI | CTCGAG | 1 cut(s) | 1287 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1161 |
| SmlI | CTYRAG | 3 cut(s) | 587, 1287, 1535 |
| SmoI | CTYRAG | 3 cut(s) | 587, 1287, 1535 |
| SphI | GCATGC | 1 cut(s) | 1090 |
| Sse9I | AATT | 9 cut(s) | 327, 420, 696, 716, 815, 826, 1246, 1279, 1303 |
| SspI | AATATT | 1 cut(s) | 317 |
| SspMI | CTAG | 5 cut(s) | 132, 540, 567, 1070, 1311 |
| StyD4I | CCNGG | 2 cut(s) | 53, 918 |
| StyI | CCWWGG | 1 cut(s) | 1011 |
| TaaI | ACNGT | 4 cut(s) | 152, 655, 1024, 1038 |
| TaiI | ACGT | 2 cut(s) | 696, 1510 |
| TaqI | TCGA | 3 cut(s) | 822, 1167, 1288 |
| TasI | AATT | 9 cut(s) | 327, 420, 696, 716, 815, 826, 1246, 1279, 1303 |
| TatI | WGTACW | 2 cut(s) | 597, 650 |
| TfiI | GAWTC | 2 cut(s) | 563, 1481 |
| Tru1I | TTAA | 8 cut(s) | 450, 633, 1019, 1307, 1355, 1395, 1424, 1536 |
| Tru9I | TTAA | 8 cut(s) | 450, 633, 1019, 1307, 1355, 1395, 1424, 1536 |
| TscAI | CASTG | 5 cut(s) | 339, 872, 975, 1043, 1114 |
| TseFI | GTSAC | 6 cut(s) | 94, 205, 689, 778, 1003, 1329 |
| TseI | GCWGC | 2 cut(s) | 893, 1031 |
| Tsp45I | GTSAC | 6 cut(s) | 94, 205, 689, 778, 1003, 1329 |
| TspDTI | ATGAA | 3 cut(s) | 228, 339, 565 |
| TspRI | CASTG | 5 cut(s) | 339, 872, 975, 1043, 1114 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 424, 1251 |
| Vha464I | CTTAAG | 1 cut(s) | 1535 |
| XapI | RAATTY | 5 cut(s) | 327, 716, 826, 1279, 1303 |
| XceI | RCATGY | 4 cut(s) | 14, 67, 1090, 1269 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 425, 1212, 1376 |
| XhoI | CTCGAG | 1 cut(s) | 1287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1282 |
| XspI | CTAG | 5 cut(s) | 132, 540, 567, 1070, 1311 |
| ZrmI | AGTACT | 2 cut(s) | 599, 652 |
| Zsp2I | ATGCAT | 1 cut(s) | 1179 |