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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 275 |
| AccB1I | GGYRCC | 2 cut(s) | 275, 397 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 372 |
| AciI | CCGC | 1 cut(s) | 77 |
| AclWI | GGATC | 2 cut(s) | 315, 328 |
| AfaI | GTAC | 3 cut(s) | 123, 277, 430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 372 |
| AjiI | CACGTC | 1 cut(s) | 224 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AluBI | AGCT | 2 cut(s) | 191, 229 |
| AluI | AGCT | 2 cut(s) | 191, 229 |
| Alw26I | GTCTC | 2 cut(s) | 80, 313 |
| AlwI | GGATC | 2 cut(s) | 315, 328 |
| Ama87I | CYCGRG | 1 cut(s) | 393 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| Asp718I | GGTACC | 1 cut(s) | 275 |
| AspLEI | GCGC | 1 cut(s) | 330 |
| AsuC2I | CCSGG | 3 cut(s) | 261, 394, 395 |
| AvaI | CYCGRG | 1 cut(s) | 393 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 420, 453 |
| BamHI | GGATCC | 1 cut(s) | 320 |
| BanI | GGYRCC | 2 cut(s) | 275, 397 |
| BbvI | GCAGC | 1 cut(s) | 118 |
| BceAI | ACGGC | 1 cut(s) | 50 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BciVI | GTATCC | 1 cut(s) | 10 |
| BcnI | CCSGG | 3 cut(s) | 261, 394, 395 |
| BcoDI | GTCTC | 2 cut(s) | 80, 313 |
| BfaI | CTAG | 4 cut(s) | 170, 236, 270, 504 |
| BfuI | GTATCC | 1 cut(s) | 10 |
| BisI | GCNGC | 2 cut(s) | 78, 132 |
| BlsI | GCNGC | 2 cut(s) | 79, 133 |
| Bme1390I | CCNGG | 4 cut(s) | 14, 261, 394, 395 |
| BmeT110I | CYCGRG | 1 cut(s) | 393 |
| BmgBI | CACGTC | 1 cut(s) | 224 |
| BmiI | GGNNCC | 5 cut(s) | 11, 246, 277, 322, 399 |
| BmrFI | CCNGG | 4 cut(s) | 14, 261, 394, 395 |
| BmsI | GCATC | 3 cut(s) | 143, 472, 503 |
| BpmI | CTGGAG | 1 cut(s) | 87 |
| BpuEI | CTTGAG | 3 cut(s) | 78, 171, 387 |
| BpuMI | CCSGG | 3 cut(s) | 261, 394, 395 |
| BsaJI | CCNNGG | 3 cut(s) | 279, 299, 393 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 372 |
| Bse118I | RCCGGY | 1 cut(s) | 73 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 514 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 3 cut(s) | 279, 299, 393 |
| BseGI | GGATG | 3 cut(s) | 472, 487, 494 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 372 |
| BseMI | GCAATG | 2 cut(s) | 87, 514 |
| BseRI | GAGGAG | 1 cut(s) | 467 |
| BseXI | GCAGC | 1 cut(s) | 118 |
| BseYI | CCCAGC | 1 cut(s) | 37 |
| BshNI | GGYRCC | 2 cut(s) | 275, 397 |
| BsiHKCI | CYCGRG | 1 cut(s) | 393 |
| BsiSI | CCGG | 4 cut(s) | 74, 248, 260, 394 |
| BslFI | GGGAC | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 372 |
| BsmAI | GTCTC | 2 cut(s) | 80, 313 |
| BsmFI | GGGAC | 1 cut(s) | 234 |
| BsoBI | CYCGRG | 1 cut(s) | 393 |
| Bsp143I | GATC | 1 cut(s) | 320 |
| BspACI | CCGC | 1 cut(s) | 77 |
| BspLI | GGNNCC | 5 cut(s) | 11, 246, 277, 322, 399 |
| BspPI | GGATC | 2 cut(s) | 315, 328 |
| BspT107I | GGYRCC | 2 cut(s) | 275, 397 |
| BsrDI | GCAATG | 2 cut(s) | 87, 514 |
| BsrFI | RCCGGY | 1 cut(s) | 73 |
| BssAI | RCCGGY | 1 cut(s) | 73 |
| BssECI | CCNNGG | 3 cut(s) | 279, 299, 393 |
| BssMI | GATC | 1 cut(s) | 320 |
| BssT1I | CCWWGG | 1 cut(s) | 299 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 1 cut(s) | 129 |
| BstDSI | CCRYGG | 1 cut(s) | 279 |
| BstF5I | GGATG | 3 cut(s) | 472, 487, 494 |
| BstHHI | GCGC | 1 cut(s) | 330 |
| BstKTI | GATC | 1 cut(s) | 323 |
| BstMAI | GTCTC | 2 cut(s) | 80, 313 |
| BstMBI | GATC | 1 cut(s) | 320 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 491 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstNSI | RCATGY | 1 cut(s) | 461 |
| BstSCI | CCNGG | 4 cut(s) | 12, 259, 392, 393 |
| BstV1I | GCAGC | 1 cut(s) | 118 |
| BstX2I | RGATCY | 1 cut(s) | 320 |
| BstYI | RGATCY | 1 cut(s) | 320 |
| BsuI | GTATCC | 1 cut(s) | 10 |
| BtgI | CCRYGG | 1 cut(s) | 279 |
| BtrI | CACGTC | 1 cut(s) | 224 |
| BtsCI | GGATG | 3 cut(s) | 472, 487, 494 |
| Cac8I | GCNNGC | 1 cut(s) | 129 |
| CfoI | GCGC | 1 cut(s) | 330 |
| Cfr10I | RCCGGY | 1 cut(s) | 73 |
| Cfr9I | CCCGGG | 1 cut(s) | 393 |
| Csp6I | GTAC | 3 cut(s) | 122, 276, 429 |
| CviAII | CATG | 2 cut(s) | 458, 463 |
| CviJI | RGCY | 8 cut(s) | 37, 151, 185, 191, 229, 335, 344, 442 |
| CviKI_1 | RGCY | 8 cut(s) | 37, 151, 185, 191, 229, 335, 344, 442 |
| CviQI | GTAC | 3 cut(s) | 122, 276, 429 |
| DpnI | GATC | 1 cut(s) | 322 |
| DpnII | GATC | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 1 cut(s) | 299 |
| Eco88I | CYCGRG | 1 cut(s) | 393 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoT14I | CCWWGG | 1 cut(s) | 299 |
| ErhI | CCWWGG | 1 cut(s) | 299 |
| FaeI | CATG | 2 cut(s) | 461, 466 |
| FaiI | YATR | 3 cut(s) | 338, 459, 464 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 87, 119 |
| FaqI | GGGAC | 1 cut(s) | 234 |
| FatI | CATG | 2 cut(s) | 457, 462 |
| Fnu4HI | GCNGC | 2 cut(s) | 78, 132 |
| FokI | GGATG | 3 cut(s) | 479, 481, 494 |
| Fsp4HI | GCNGC | 2 cut(s) | 78, 132 |
| FspBI | CTAG | 4 cut(s) | 170, 236, 270, 504 |
| GlaI | GCGC | 1 cut(s) | 329 |
| GluI | GCNGC | 2 cut(s) | 78, 132 |
| GsaI | CCCAGC | 1 cut(s) | 41 |
| GsuI | CTGGAG | 1 cut(s) | 87 |
| HapII | CCGG | 4 cut(s) | 74, 248, 260, 394 |
| HhaI | GCGC | 1 cut(s) | 330 |
| Hin1II | CATG | 2 cut(s) | 461, 466 |
| Hin6I | GCGC | 1 cut(s) | 328 |
| HinP1I | GCGC | 1 cut(s) | 328 |
| HincII | GTYRAC | 1 cut(s) | 294 |
| HindII | GTYRAC | 1 cut(s) | 294 |
| HinfI | GANTC | 4 cut(s) | 62, 154, 290, 470 |
| HpaII | CCGG | 4 cut(s) | 74, 248, 260, 394 |
| Hpy166II | GTNNAC | 1 cut(s) | 294 |
| Hpy188I | TCNGA | 1 cut(s) | 475 |
| Hpy188III | TCNNGA | 3 cut(s) | 66, 170, 270 |
| Hpy8I | GTNNAC | 1 cut(s) | 294 |
| HpyAV | CCTTC | 2 cut(s) | 175, 412 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4IV | ACGT | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 4 cut(s) | 134, 146, 485, 494 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 491 |
| HpySE526I | ACGT | 1 cut(s) | 223 |
| Hsp92II | CATG | 2 cut(s) | 461, 466 |
| HspAI | GCGC | 1 cut(s) | 328 |
| KpnI | GGTACC | 1 cut(s) | 279 |
| Kzo9I | GATC | 1 cut(s) | 320 |
| LmnI | GCTCC | 2 cut(s) | 349, 454 |
| LpnPI | CCDG | 9 cut(s) | 23, 26, 51, 87, 132, 141, 261, 273, 407 |
| Lsp1109I | GCAGC | 1 cut(s) | 118 |
| LweI | GCATC | 3 cut(s) | 143, 472, 503 |
| MaeI | CTAG | 4 cut(s) | 170, 236, 270, 504 |
| MaeII | ACGT | 1 cut(s) | 223 |
| MaeIII | GTNAC | 1 cut(s) | 250 |
| MalI | GATC | 1 cut(s) | 322 |
| MboI | GATC | 1 cut(s) | 320 |
| MflI | RGATCY | 1 cut(s) | 320 |
| MluCI | AATT | 2 cut(s) | 175, 486 |
| MlyI | GAGTC | 2 cut(s) | 71, 299 |
| MnlI | CCTC | 9 cut(s) | 16, 243, 266, 277, 351, 411, 415, 445, 508 |
| MseI | TTAA | 1 cut(s) | 514 |
| MspI | CCGG | 4 cut(s) | 74, 248, 260, 394 |
| MspR9I | CCNGG | 4 cut(s) | 14, 261, 394, 395 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 491 |
| NciI | CCSGG | 3 cut(s) | 261, 394, 395 |
| NdeII | GATC | 1 cut(s) | 320 |
| NlaIII | CATG | 2 cut(s) | 461, 466 |
| NlaIV | GGNNCC | 5 cut(s) | 11, 246, 277, 322, 399 |
| NspI | RCATGY | 1 cut(s) | 461 |
| PfeI | GAWTC | 2 cut(s) | 154, 470 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 372 |
| PkrI | GCNGC | 2 cut(s) | 79, 133 |
| PleI | GAGTC | 2 cut(s) | 70, 298 |
| PpsI | GAGTC | 2 cut(s) | 70, 298 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspFI | CCCAGC | 1 cut(s) | 37 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 5 cut(s) | 11, 246, 277, 322, 399 |
| PsuI | RGATCY | 1 cut(s) | 320 |
| RsaI | GTAC | 3 cut(s) | 123, 277, 430 |
| RsaNI | GTAC | 3 cut(s) | 122, 276, 429 |
| SaqAI | TTAA | 1 cut(s) | 514 |
| SatI | GCNGC | 2 cut(s) | 78, 132 |
| Sau3AI | GATC | 1 cut(s) | 320 |
| SchI | GAGTC | 2 cut(s) | 71, 299 |
| ScrFI | CCNGG | 4 cut(s) | 14, 261, 394, 395 |
| SetI | ASST | 8 cut(s) | 193, 226, 231, 235, 277, 288, 426, 430 |
| SfaNI | GCATC | 3 cut(s) | 143, 472, 503 |
| SmaI | CCCGGG | 1 cut(s) | 395 |
| SmlI | CTYRAG | 3 cut(s) | 93, 186, 402 |
| SmoI | CTYRAG | 3 cut(s) | 93, 186, 402 |
| Sse9I | AATT | 2 cut(s) | 175, 486 |
| SsiI | CCGC | 1 cut(s) | 77 |
| SspI | AATATT | 1 cut(s) | 447 |
| SspMI | CTAG | 4 cut(s) | 170, 236, 270, 504 |
| StyD4I | CCNGG | 4 cut(s) | 12, 259, 392, 393 |
| StyI | CCWWGG | 1 cut(s) | 299 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaiI | ACGT | 1 cut(s) | 226 |
| TaqI | TCGA | 2 cut(s) | 114, 196 |
| TasI | AATT | 2 cut(s) | 175, 486 |
| TatI | WGTACW | 1 cut(s) | 121 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TfiI | GAWTC | 2 cut(s) | 154, 470 |
| Tru1I | TTAA | 1 cut(s) | 514 |
| Tru9I | TTAA | 1 cut(s) | 514 |
| TseI | GCWGC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 1 cut(s) | 89 |
| TspGWI | ACGGA | 1 cut(s) | 371 |
| TspMI | CCCGGG | 1 cut(s) | 393 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 372 |
| XbaI | TCTAGA | 2 cut(s) | 169, 269 |
| XceI | RCATGY | 1 cut(s) | 461 |
| XmaI | CCCGGG | 1 cut(s) | 393 |
| XspI | CTAG | 4 cut(s) | 170, 236, 270, 504 |