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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 623 |
| AclWI | GGATC | 1 cut(s) | 41 |
| AcuI | CTGAAG | 1 cut(s) | 359 |
| AfaI | GTAC | 1 cut(s) | 145 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 202 |
| AgsI | TTSAA | 3 cut(s) | 287, 544, 551 |
| AjnI | CCWGG | 1 cut(s) | 181 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 380, 412 |
| AluBI | AGCT | 5 cut(s) | 12, 293, 317, 373, 514 |
| AluI | AGCT | 5 cut(s) | 12, 293, 317, 373, 514 |
| Alw21I | GWGCWC | 1 cut(s) | 14 |
| Alw26I | GTCTC | 4 cut(s) | 9, 397, 451, 631 |
| AlwI | GGATC | 1 cut(s) | 41 |
| ApeKI | GCWGC | 3 cut(s) | 290, 403, 406 |
| AspA2I | CCTAGG | 1 cut(s) | 263 |
| AspS9I | GGNCC | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 88, 617 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| AvrII | CCTAGG | 1 cut(s) | 263 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 1 cut(s) | 14 |
| BbvI | GCAGC | 3 cut(s) | 302, 390, 418 |
| BccI | CCATC | 4 cut(s) | 61, 196, 421, 601 |
| BciT130I | CCWGG | 1 cut(s) | 183 |
| BcoDI | GTCTC | 4 cut(s) | 9, 397, 451, 631 |
| BfaI | CTAG | 1 cut(s) | 264 |
| BfmI | CTRYAG | 2 cut(s) | 150, 404 |
| BisI | GCNGC | 3 cut(s) | 291, 404, 407 |
| BlnI | CCTAGG | 1 cut(s) | 263 |
| BlsI | GCNGC | 3 cut(s) | 292, 405, 408 |
| Bme1390I | CCNGG | 1 cut(s) | 183 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 1 cut(s) | 185 |
| BmrFI | CCNGG | 1 cut(s) | 183 |
| BmrI | ACTGGG | 1 cut(s) | 258 |
| BmsI | GCATC | 1 cut(s) | 478 |
| BmuI | ACTGGG | 1 cut(s) | 258 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 377, 409 |
| BpmI | CTGGAG | 1 cut(s) | 279 |
| BsaI | GGTCTC | 2 cut(s) | 451, 631 |
| BsaJI | CCNNGG | 1 cut(s) | 263 |
| BsaWI | WCCGGW | 1 cut(s) | 41 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 202 |
| Bse1I | ACTGG | 2 cut(s) | 253, 296 |
| BseBI | CCWGG | 1 cut(s) | 183 |
| BseDI | CCNNGG | 1 cut(s) | 263 |
| BseGI | GGATG | 2 cut(s) | 72, 508 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 202 |
| BseNI | ACTGG | 2 cut(s) | 253, 296 |
| BseRI | GAGGAG | 2 cut(s) | 398, 572 |
| BseXI | GCAGC | 3 cut(s) | 302, 390, 418 |
| BsiHKAI | GWGCWC | 1 cut(s) | 14 |
| BsiSI | CCGG | 1 cut(s) | 42 |
| BslFI | GGGAC | 1 cut(s) | 259 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 202 |
| BsmAI | GTCTC | 4 cut(s) | 9, 397, 451, 631 |
| BsmFI | GGGAC | 1 cut(s) | 259 |
| Bso31I | GGTCTC | 2 cut(s) | 451, 631 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| BspACI | CCGC | 1 cut(s) | 623 |
| BspHI | TCATGA | 1 cut(s) | 105 |
| BspMAI | CTGCAG | 2 cut(s) | 154, 408 |
| BspPI | GGATC | 1 cut(s) | 41 |
| BspTNI | GGTCTC | 2 cut(s) | 451, 631 |
| BsrI | ACTGG | 2 cut(s) | 253, 296 |
| BssECI | CCNNGG | 1 cut(s) | 263 |
| BssMI | GATC | 1 cut(s) | 46 |
| BssT1I | CCWWGG | 1 cut(s) | 263 |
| Bst2UI | CCWGG | 1 cut(s) | 183 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 644 |
| BstC8I | GCNNGC | 2 cut(s) | 324, 584 |
| BstDEI | CTNAG | 3 cut(s) | 8, 225, 515 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 2 cut(s) | 72, 508 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 4 cut(s) | 9, 397, 451, 631 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 323, 569, 644 |
| BstNI | CCWGG | 1 cut(s) | 183 |
| BstNSI | RCATGY | 2 cut(s) | 326, 586 |
| BstSCI | CCNGG | 1 cut(s) | 181 |
| BstSFI | CTRYAG | 2 cut(s) | 150, 404 |
| BstV1I | GCAGC | 3 cut(s) | 302, 390, 418 |
| BtsCI | GGATG | 2 cut(s) | 72, 508 |
| BtsI | GCAGTG | 2 cut(s) | 159, 654 |
| BtsIMutI | CAGTG | 4 cut(s) | 159, 231, 603, 654 |
| Cac8I | GCNNGC | 2 cut(s) | 324, 584 |
| CciI | TCATGA | 1 cut(s) | 105 |
| Cfr13I | GGNCC | 1 cut(s) | 185 |
| CsiI | ACCWGGT | 1 cut(s) | 181 |
| Csp6I | GTAC | 1 cut(s) | 144 |
| CviAII | CATG | 5 cut(s) | 86, 106, 174, 323, 583 |
| CviQI | GTAC | 1 cut(s) | 144 |
| DdeI | CTNAG | 3 cut(s) | 8, 225, 515 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Ecl136II | GAGCTC | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 1 cut(s) | 263 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 2 cut(s) | 451, 631 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| Eco53kI | GAGCTC | 1 cut(s) | 12 |
| Eco57I | CTGAAG | 1 cut(s) | 359 |
| EcoICRI | GAGCTC | 1 cut(s) | 12 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 200 |
| EcoRII | CCWGG | 1 cut(s) | 181 |
| EcoT14I | CCWWGG | 1 cut(s) | 263 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| ErhI | CCWWGG | 1 cut(s) | 263 |
| FaeI | CATG | 5 cut(s) | 89, 109, 177, 326, 586 |
| FaiI | YATR | 9 cut(s) | 87, 107, 167, 175, 324, 411, 525, 584, 614 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 530, 562 |
| FaqI | GGGAC | 1 cut(s) | 259 |
| FatI | CATG | 5 cut(s) | 85, 105, 173, 322, 582 |
| Fnu4HI | GCNGC | 3 cut(s) | 291, 404, 407 |
| FokI | GGATG | 2 cut(s) | 79, 515 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 3 cut(s) | 291, 404, 407 |
| FspBI | CTAG | 1 cut(s) | 264 |
| GluI | GCNGC | 3 cut(s) | 291, 404, 407 |
| GsuI | CTGGAG | 1 cut(s) | 279 |
| HapII | CCGG | 1 cut(s) | 42 |
| Hin1II | CATG | 5 cut(s) | 89, 109, 177, 326, 586 |
| HindIII | AAGCTT | 2 cut(s) | 371, 512 |
| HinfI | GANTC | 2 cut(s) | 215, 365 |
| HpaII | CCGG | 1 cut(s) | 42 |
| HphI | GGTGA | 3 cut(s) | 56, 88, 617 |
| Hpy166II | GTNNAC | 2 cut(s) | 231, 422 |
| Hpy188I | TCNGA | 3 cut(s) | 9, 16, 132 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 106, 362 |
| Hpy8I | GTNNAC | 2 cut(s) | 231, 422 |
| HpyAV | CCTTC | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 9 cut(s) | 115, 152, 177, 322, 406, 491, 616, 638, 647 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 323, 569, 644 |
| HpyF3I | CTNAG | 3 cut(s) | 8, 225, 515 |
| Hsp92II | CATG | 5 cut(s) | 89, 109, 177, 326, 586 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| LmnI | GCTCC | 1 cut(s) | 298 |
| Lsp1109I | GCAGC | 3 cut(s) | 302, 390, 418 |
| LweI | GCATC | 1 cut(s) | 478 |
| MabI | ACCWGGT | 1 cut(s) | 181 |
| MaeI | CTAG | 1 cut(s) | 264 |
| MaeIII | GTNAC | 1 cut(s) | 76 |
| MalI | GATC | 1 cut(s) | 48 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 5 cut(s) | 270, 275, 457, 460, 520 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| MluCI | AATT | 2 cut(s) | 551, 567 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MmeI | TCCRAC | 1 cut(s) | 280 |
| MseI | TTAA | 1 cut(s) | 257 |
| MslI | CAYNNNNRTG | 3 cut(s) | 110, 414, 587 |
| MspI | CCGG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 1 cut(s) | 183 |
| MvaI | CCWGG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 323, 569, 644 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIII | CATG | 5 cut(s) | 89, 109, 177, 326, 586 |
| NmuCI | GTSAC | 1 cut(s) | 76 |
| NspI | RCATGY | 2 cut(s) | 326, 586 |
| PaeI | GCATGC | 2 cut(s) | 326, 586 |
| PagI | TCATGA | 1 cut(s) | 105 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PflFI | GACNNNGTC | 1 cut(s) | 183 |
| PkrI | GCNGC | 3 cut(s) | 292, 405, 408 |
| PleI | GAGTC | 1 cut(s) | 359 |
| PpsI | GAGTC | 1 cut(s) | 359 |
| Psp124BI | GAGCTC | 1 cut(s) | 14 |
| Psp6I | CCWGG | 1 cut(s) | 181 |
| PspGI | CCWGG | 1 cut(s) | 181 |
| PspPI | GGNCC | 1 cut(s) | 185 |
| PstI | CTGCAG | 2 cut(s) | 154, 408 |
| PsyI | GACNNNGTC | 1 cut(s) | 183 |
| RsaI | GTAC | 1 cut(s) | 145 |
| RsaNI | GTAC | 1 cut(s) | 144 |
| RseI | CAYNNNNRTG | 3 cut(s) | 110, 414, 587 |
| SacI | GAGCTC | 1 cut(s) | 14 |
| SaqAI | TTAA | 1 cut(s) | 257 |
| SatI | GCNGC | 3 cut(s) | 291, 404, 407 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| Sau96I | GGNCC | 1 cut(s) | 185 |
| SchI | GAGTC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 1 cut(s) | 183 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SexAI | ACCWGGT | 1 cut(s) | 181 |
| SfaNI | GCATC | 1 cut(s) | 478 |
| SfcI | CTRYAG | 2 cut(s) | 150, 404 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 110, 414, 587 |
| SphI | GCATGC | 2 cut(s) | 326, 586 |
| Sse9I | AATT | 2 cut(s) | 551, 567 |
| SsiI | CCGC | 1 cut(s) | 623 |
| SspMI | CTAG | 1 cut(s) | 264 |
| SstI | GAGCTC | 1 cut(s) | 14 |
| StyD4I | CCNGG | 1 cut(s) | 181 |
| StyI | CCWWGG | 1 cut(s) | 263 |
| TaqI | TCGA | 1 cut(s) | 368 |
| TasI | AATT | 2 cut(s) | 551, 567 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| Tru1I | TTAA | 1 cut(s) | 257 |
| Tru9I | TTAA | 1 cut(s) | 257 |
| TscAI | CASTG | 4 cut(s) | 159, 238, 603, 654 |
| TseFI | GTSAC | 1 cut(s) | 76 |
| TseI | GCWGC | 3 cut(s) | 290, 403, 406 |
| Tsp45I | GTSAC | 1 cut(s) | 76 |
| TspRI | CASTG | 4 cut(s) | 159, 238, 603, 654 |
| Tth111I | GACNNNGTC | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 200 |
| XceI | RCATGY | 2 cut(s) | 326, 586 |
| XmaJI | CCTAGG | 1 cut(s) | 263 |
| XspI | CTAG | 1 cut(s) | 264 |