Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 54, 398 |
| Acc36I | ACCTGC | 2 cut(s) | 698, 1168 |
| AccB1I | GGYRCC | 1 cut(s) | 1444 |
| AccBSI | CCGCTC | 1 cut(s) | 206 |
| AccI | GTMKAC | 1 cut(s) | 1510 |
| AccII | CGCG | 1 cut(s) | 609 |
| AciI | CCGC | 3 cut(s) | 26, 206, 1367 |
| AclWI | GGATC | 7 cut(s) | 2, 15, 374, 433, 500, 1017, 1426 |
| AcoI | YGGCCR | 2 cut(s) | 72, 144 |
| AcsI | RAATTY | 1 cut(s) | 1288 |
| AcuI | CTGAAG | 1 cut(s) | 807 |
| AcvI | CACGTG | 1 cut(s) | 958 |
| AcyI | GRCGYC | 1 cut(s) | 1445 |
| AfaI | GTAC | 1 cut(s) | 160 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 438, 732, 1441, 1485 |
| AflII | CTTAAG | 1 cut(s) | 911 |
| AflIII | ACRYGT | 1 cut(s) | 955 |
| AgsI | TTSAA | 6 cut(s) | 339, 469, 581, 626, 1295, 1301 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 801, 921 |
| AjiI | CACGTC | 1 cut(s) | 58 |
| AjnI | CCWGG | 3 cut(s) | 946, 1003, 1440 |
| AleI | CACNNNNGTG | 1 cut(s) | 764 |
| Alw21I | GWGCWC | 2 cut(s) | 1379, 1498 |
| Alw26I | GTCTC | 2 cut(s) | 442, 1055 |
| Alw44I | GTGCAC | 1 cut(s) | 1494 |
| AlwI | GGATC | 7 cut(s) | 2, 15, 374, 433, 500, 1017, 1426 |
| Ama87I | CYCGRG | 1 cut(s) | 1135 |
| AoxI | GGCC | 7 cut(s) | 72, 144, 462, 734, 907, 1049, 1476 |
| ApaLI | GTGCAC | 1 cut(s) | 1494 |
| ApeKI | GCWGC | 5 cut(s) | 29, 88, 770, 928, 1115 |
| ApoI | RAATTY | 1 cut(s) | 1288 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 555, 587 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 827, 1249 |
| AspLEI | GCGC | 4 cut(s) | 55, 399, 1134, 1447 |
| AspS9I | GGNCC | 3 cut(s) | 272, 950, 1477 |
| AsuC2I | CCSGG | 2 cut(s) | 1136, 1137 |
| AsuHPI | GGTGA | 7 cut(s) | 751, 952, 993, 1231, 1249, 1318, 1355 |
| AvaI | CYCGRG | 1 cut(s) | 1135 |
| AvaII | GGWCC | 2 cut(s) | 272, 950 |
| AxyI | CCTNAGG | 1 cut(s) | 1338 |
| BaeGI | GKGCMC | 1 cut(s) | 1498 |
| BamHI | GGATCC | 1 cut(s) | 7 |
| BanI | GGYRCC | 1 cut(s) | 1444 |
| BanII | GRGCYC | 3 cut(s) | 384, 1230, 1379 |
| BbrPI | CACGTG | 1 cut(s) | 958 |
| BbsI | GAAGAC | 1 cut(s) | 1398 |
| Bbv12I | GWGCWC | 2 cut(s) | 1379, 1498 |
| BbvI | GCAGC | 5 cut(s) | 16, 75, 757, 915, 1102 |
| BccI | CCATC | 5 cut(s) | 311, 632, 697, 1028, 1479 |
| BciT130I | CCWGG | 3 cut(s) | 948, 1005, 1442 |
| BclI | TGATCA | 1 cut(s) | 235 |
| BcnI | CCSGG | 2 cut(s) | 1136, 1137 |
| BcoDI | GTCTC | 2 cut(s) | 442, 1055 |
| BfaI | CTAG | 3 cut(s) | 23, 753, 1176 |
| BfmI | CTRYAG | 1 cut(s) | 1281 |
| BfoI | RGCGCY | 1 cut(s) | 1448 |
| BfrI | CTTAAG | 1 cut(s) | 911 |
| BfuAI | ACCTGC | 2 cut(s) | 698, 1168 |
| BisI | GCNGC | 6 cut(s) | 27, 30, 89, 771, 929, 1116 |
| BlsI | GCNGC | 6 cut(s) | 28, 31, 90, 772, 930, 1117 |
| Bme1390I | CCNGG | 5 cut(s) | 948, 1005, 1136, 1137, 1442 |
| Bme18I | GGWCC | 2 cut(s) | 272, 950 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 801, 921 |
| BmeT110I | CYCGRG | 1 cut(s) | 1135 |
| BmgBI | CACGTC | 1 cut(s) | 58 |
| BmgT120I | GGNCC | 3 cut(s) | 272, 950, 1477 |
| BmiI | GGNNCC | 4 cut(s) | 9, 383, 963, 1446 |
| BmrFI | CCNGG | 5 cut(s) | 948, 1005, 1136, 1137, 1442 |
| BmsI | GCATC | 8 cut(s) | 75, 153, 718, 904, 1016, 1102, 1312, 1354 |
| BpiI | GAAGAC | 1 cut(s) | 1398 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1379, 1411 |
| BpmI | CTGGAG | 1 cut(s) | 822 |
| BpuEI | CTTGAG | 1 cut(s) | 1181 |
| BpuMI | CCSGG | 2 cut(s) | 1136, 1137 |
| Bsa29I | ATCGAT | 1 cut(s) | 1012 |
| BsaAI | YACGTR | 1 cut(s) | 958 |
| BsaHI | GRCGYC | 1 cut(s) | 1445 |
| BsaJI | CCNNGG | 7 cut(s) | 75, 275, 1004, 1021, 1135, 1380, 1480 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 438, 732, 1441, 1485 |
| Bse1I | ACTGG | 2 cut(s) | 229, 1403 |
| Bse21I | CCTNAGG | 1 cut(s) | 1338 |
| Bse3DI | GCAATG | 1 cut(s) | 1332 |
| BseBI | CCWGG | 3 cut(s) | 948, 1005, 1442 |
| BseCI | ATCGAT | 1 cut(s) | 1012 |
| BseDI | CCNNGG | 7 cut(s) | 75, 275, 1004, 1021, 1135, 1380, 1480 |
| BseGI | GGATG | 5 cut(s) | 1017, 1031, 1369, 1417, 1490 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 438, 732, 1441, 1485 |
| BseMI | GCAATG | 1 cut(s) | 1332 |
| BseMII | CTCAG | 1 cut(s) | 1329 |
| BseNI | ACTGG | 2 cut(s) | 229, 1403 |
| BseRI | GAGGAG | 5 cut(s) | 113, 680, 1139, 1226, 1229 |
| BseSI | GKGCMC | 1 cut(s) | 1498 |
| BseXI | GCAGC | 5 cut(s) | 16, 75, 757, 915, 1102 |
| Bsh1236I | CGCG | 1 cut(s) | 609 |
| BshFI | GGCC | 7 cut(s) | 74, 146, 464, 736, 909, 1051, 1478 |
| BshNI | GGYRCC | 1 cut(s) | 1444 |
| BshVI | ATCGAT | 1 cut(s) | 1012 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1379, 1498 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1135 |
| BsiSI | CCGG | 1 cut(s) | 1136 |
| BslFI | GGGAC | 2 cut(s) | 129, 1194 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 438, 732, 1441, 1485 |
| BsmAI | GTCTC | 2 cut(s) | 442, 1055 |
| BsmFI | GGGAC | 2 cut(s) | 129, 1194 |
| BsmI | GAATGC | 1 cut(s) | 703 |
| BsnI | GGCC | 7 cut(s) | 74, 146, 464, 736, 909, 1051, 1478 |
| BsoBI | CYCGRG | 1 cut(s) | 1135 |
| Bsp1286I | GDGCHC | 4 cut(s) | 384, 1230, 1379, 1498 |
| Bsp68I | TCGCGA | 1 cut(s) | 609 |
| BspACI | CCGC | 3 cut(s) | 26, 206, 1367 |
| BspANI | GGCC | 7 cut(s) | 74, 146, 464, 736, 909, 1051, 1478 |
| BspCNI | CTCAG | 1 cut(s) | 1330 |
| BspDI | ATCGAT | 1 cut(s) | 1012 |
| BspFNI | CGCG | 1 cut(s) | 609 |
| BspHI | TCATGA | 1 cut(s) | 238 |
| BspLI | GGNNCC | 4 cut(s) | 9, 383, 963, 1446 |
| BspMAI | CTGCAG | 1 cut(s) | 1285 |
| BspMI | ACCTGC | 2 cut(s) | 698, 1168 |
| BspPI | GGATC | 7 cut(s) | 2, 15, 374, 433, 500, 1017, 1426 |
| BspT107I | GGYRCC | 1 cut(s) | 1444 |
| BspTI | CTTAAG | 1 cut(s) | 911 |
| BsrBI | CCGCTC | 1 cut(s) | 206 |
| BsrDI | GCAATG | 1 cut(s) | 1332 |
| BsrI | ACTGG | 2 cut(s) | 229, 1403 |
| BssECI | CCNNGG | 7 cut(s) | 75, 275, 1004, 1021, 1135, 1380, 1480 |
| BssNI | GRCGYC | 1 cut(s) | 1445 |
| BssT1I | CCWWGG | 1 cut(s) | 1021 |
| Bst2UI | CCWGG | 3 cut(s) | 948, 1005, 1442 |
| Bst4CI | ACNGT | 7 cut(s) | 373, 460, 473, 799, 869, 1384, 1429 |
| Bst6I | CTCTTC | 4 cut(s) | 818, 1203, 1237, 1296 |
| BstACI | GRCGYC | 1 cut(s) | 1445 |
| BstAFI | CTTAAG | 1 cut(s) | 911 |
| BstBAI | YACGTR | 1 cut(s) | 958 |
| BstC8I | GCNNGC | 4 cut(s) | 855, 989, 1053, 1494 |
| BstDEI | CTNAG | 1 cut(s) | 1338 |
| BstDSI | CCRYGG | 3 cut(s) | 275, 1380, 1480 |
| BstF5I | GGATG | 5 cut(s) | 1017, 1031, 1369, 1417, 1490 |
| BstFNI | CGCG | 1 cut(s) | 609 |
| BstH2I | RGCGCY | 1 cut(s) | 1448 |
| BstHHI | GCGC | 4 cut(s) | 55, 399, 1134, 1447 |
| BstMAI | GTCTC | 2 cut(s) | 442, 1055 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 1160 |
| BstNI | CCWGG | 3 cut(s) | 948, 1005, 1442 |
| BstNSI | RCATGY | 1 cut(s) | 991 |
| BstSCI | CCNGG | 5 cut(s) | 946, 1003, 1134, 1135, 1440 |
| BstSFI | CTRYAG | 1 cut(s) | 1281 |
| BstSLI | GKGCMC | 1 cut(s) | 1498 |
| BstUI | CGCG | 1 cut(s) | 609 |
| BstV1I | GCAGC | 5 cut(s) | 16, 75, 757, 915, 1102 |
| BstV2I | GAAGAC | 1 cut(s) | 1398 |
| BstX2I | RGATCY | 3 cut(s) | 7, 425, 492 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 638 |
| BstYI | RGATCY | 3 cut(s) | 7, 425, 492 |
| Bsu15I | ATCGAT | 1 cut(s) | 1012 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1338 |
| BsuRI | GGCC | 7 cut(s) | 74, 146, 464, 736, 909, 1051, 1478 |
| BsuTUI | ATCGAT | 1 cut(s) | 1012 |
| BtgI | CCRYGG | 3 cut(s) | 275, 1380, 1480 |
| BtgZI | GCGATG | 2 cut(s) | 98, 716 |
| BtrI | CACGTC | 1 cut(s) | 58 |
| BtsCI | GGATG | 5 cut(s) | 1017, 1031, 1369, 1417, 1490 |
| BtsIMutI | CAGTG | 2 cut(s) | 369, 865 |
| BtuMI | TCGCGA | 1 cut(s) | 609 |
| BveI | ACCTGC | 2 cut(s) | 698, 1168 |
| Cac8I | GCNNGC | 4 cut(s) | 855, 989, 1053, 1494 |
| CciI | TCATGA | 1 cut(s) | 238 |
| CfoI | GCGC | 4 cut(s) | 55, 399, 1134, 1447 |
| Cfr13I | GGNCC | 3 cut(s) | 272, 950, 1477 |
| Cfr9I | CCCGGG | 1 cut(s) | 1135 |
| ClaI | ATCGAT | 1 cut(s) | 1012 |
| Csp6I | GTAC | 1 cut(s) | 159 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1018, 1053 |
| CviAII | CATG | 5 cut(s) | 239, 295, 806, 988, 1085 |
| CviQI | GTAC | 1 cut(s) | 159 |
| DdeI | CTNAG | 1 cut(s) | 1338 |
| DinI | GGCGCC | 1 cut(s) | 1446 |
| DriI | GACNNNNNGTC | 2 cut(s) | 801, 921 |
| EaeI | YGGCCR | 2 cut(s) | 72, 144 |
| Eam1104I | CTCTTC | 4 cut(s) | 818, 1203, 1237, 1296 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 801, 921 |
| EarI | CTCTTC | 4 cut(s) | 818, 1203, 1237, 1296 |
| Ecl136II | GAGCTC | 1 cut(s) | 1377 |
| Eco130I | CCWWGG | 1 cut(s) | 1021 |
| Eco147I | AGGCCT | 1 cut(s) | 736 |
| Eco24I | GRGCYC | 3 cut(s) | 384, 1230, 1379 |
| Eco47I | GGWCC | 2 cut(s) | 272, 950 |
| Eco53kI | GAGCTC | 1 cut(s) | 1377 |
| Eco57I | CTGAAG | 1 cut(s) | 807 |
| Eco72I | CACGTG | 1 cut(s) | 958 |
| Eco81I | CCTNAGG | 1 cut(s) | 1338 |
| Eco88I | CYCGRG | 1 cut(s) | 1135 |
| EcoICRI | GAGCTC | 1 cut(s) | 1377 |
| EcoRII | CCWGG | 3 cut(s) | 946, 1003, 1440 |
| EcoT14I | CCWWGG | 1 cut(s) | 1021 |
| EcoT38I | GRGCYC | 3 cut(s) | 384, 1230, 1379 |
| EgeI | GGCGCC | 1 cut(s) | 1446 |
| EheI | GGCGCC | 1 cut(s) | 1446 |
| ErhI | CCWWGG | 1 cut(s) | 1021 |
| FaeI | CATG | 5 cut(s) | 242, 298, 809, 991, 1088 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 529, 561, 959, 991, 1383, 1415 |
| FaqI | GGGAC | 2 cut(s) | 129, 1194 |
| FatI | CATG | 5 cut(s) | 238, 294, 805, 987, 1084 |
| FbaI | TGATCA | 1 cut(s) | 235 |
| FblI | GTMKAC | 1 cut(s) | 1510 |
| Fnu4HI | GCNGC | 6 cut(s) | 27, 30, 89, 771, 929, 1116 |
| FokI | GGATG | 5 cut(s) | 1004, 1038, 1376, 1424, 1497 |
| FriOI | GRGCYC | 3 cut(s) | 384, 1230, 1379 |
| Fsp4HI | GCNGC | 6 cut(s) | 27, 30, 89, 771, 929, 1116 |
| FspAI | RTGCGCAY | 1 cut(s) | 54 |
| FspBI | CTAG | 3 cut(s) | 23, 753, 1176 |
| FspI | TGCGCA | 2 cut(s) | 54, 398 |
| GlaI | GCGC | 4 cut(s) | 54, 398, 1133, 1446 |
| GluI | GCNGC | 6 cut(s) | 27, 30, 89, 771, 929, 1116 |
| GsuI | CTGGAG | 1 cut(s) | 822 |
| HaeII | RGCGCY | 1 cut(s) | 1448 |
| HaeIII | GGCC | 7 cut(s) | 74, 146, 464, 736, 909, 1051, 1478 |
| HapII | CCGG | 1 cut(s) | 1136 |
| HhaI | GCGC | 4 cut(s) | 55, 399, 1134, 1447 |
| Hin1I | GRCGYC | 1 cut(s) | 1445 |
| Hin1II | CATG | 5 cut(s) | 242, 298, 809, 991, 1088 |
| Hin6I | GCGC | 4 cut(s) | 53, 397, 1132, 1445 |
| HinP1I | GCGC | 4 cut(s) | 53, 397, 1132, 1445 |
| HincII | GTYRAC | 3 cut(s) | 812, 1278, 1511 |
| HindII | GTYRAC | 3 cut(s) | 812, 1278, 1511 |
| HindIII | AAGCTT | 1 cut(s) | 538 |
| HinfI | GANTC | 4 cut(s) | 335, 715, 1014, 1394 |
| HpaI | GTTAAC | 1 cut(s) | 1278 |
| HpaII | CCGG | 1 cut(s) | 1136 |
| HphI | GGTGA | 7 cut(s) | 751, 952, 993, 1231, 1249, 1318, 1355 |
| Hpy166II | GTNNAC | 4 cut(s) | 812, 1278, 1496, 1511 |
| Hpy188I | TCNGA | 6 cut(s) | 7, 203, 536, 727, 787, 892 |
| Hpy188III | TCNNGA | 5 cut(s) | 239, 608, 839, 1069, 1435 |
| Hpy8I | GTNNAC | 4 cut(s) | 812, 1278, 1496, 1511 |
| Hpy99I | CGWCG | 3 cut(s) | 62, 1470, 1515 |
| HpyAV | CCTTC | 1 cut(s) | 178 |
| HpyCH4III | ACNGT | 7 cut(s) | 373, 460, 473, 799, 869, 1384, 1429 |
| HpyCH4IV | ACGT | 5 cut(s) | 57, 392, 778, 957, 1531 |
| HpyCH4V | TGCA | 9 cut(s) | 91, 689, 731, 773, 931, 1029, 1283, 1325, 1496 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 1160 |
| HpyF3I | CTNAG | 1 cut(s) | 1338 |
| HpySE526I | ACGT | 5 cut(s) | 57, 392, 778, 957, 1531 |
| Hsp92I | GRCGYC | 1 cut(s) | 1445 |
| Hsp92II | CATG | 5 cut(s) | 242, 298, 809, 991, 1088 |
| HspAI | GCGC | 4 cut(s) | 53, 397, 1132, 1445 |
| KasI | GGCGCC | 1 cut(s) | 1444 |
| Ksp22I | TGATCA | 1 cut(s) | 235 |
| KspAI | GTTAAC | 1 cut(s) | 1278 |
| LmnI | GCTCC | 5 cut(s) | 387, 892, 1152, 1168, 1382 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 75, 757, 915, 1102 |
| LweI | GCATC | 8 cut(s) | 75, 153, 718, 904, 1016, 1102, 1312, 1354 |
| MaeI | CTAG | 3 cut(s) | 23, 753, 1176 |
| MaeII | ACGT | 5 cut(s) | 57, 392, 778, 957, 1531 |
| MaeIII | GTNAC | 1 cut(s) | 571 |
| MbiI | CCGCTC | 1 cut(s) | 206 |
| MboII | GAAGA | 9 cut(s) | 254, 257, 531, 835, 877, 1220, 1224, 1313, 1403 |
| MfeI | CAATTG | 1 cut(s) | 253 |
| MflI | RGATCY | 3 cut(s) | 7, 425, 492 |
| MhlI | GDGCHC | 4 cut(s) | 384, 1230, 1379, 1498 |
| MluCI | AATT | 5 cut(s) | 253, 576, 901, 935, 1288 |
| Mly113I | GGCGCC | 1 cut(s) | 1445 |
| MlyI | GAGTC | 2 cut(s) | 709, 1388 |
| MmeI | TCCRAC | 1 cut(s) | 190 |
| MroXI | GAANNNNTTC | 2 cut(s) | 827, 1249 |
| MseI | TTAA | 3 cut(s) | 912, 1277, 1537 |
| MslI | CAYNNNNRTG | 3 cut(s) | 636, 764, 1530 |
| MspCI | CTTAAG | 1 cut(s) | 911 |
| MspI | CCGG | 1 cut(s) | 1136 |
| MspR9I | CCNGG | 5 cut(s) | 948, 1005, 1136, 1137, 1442 |
| MunI | CAATTG | 1 cut(s) | 253 |
| Mva1269I | GAATGC | 1 cut(s) | 703 |
| MvaI | CCWGG | 3 cut(s) | 948, 1005, 1442 |
| MvnI | CGCG | 1 cut(s) | 609 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 1160 |
| NarI | GGCGCC | 1 cut(s) | 1445 |
| NciI | CCSGG | 2 cut(s) | 1136, 1137 |
| NlaIII | CATG | 5 cut(s) | 242, 298, 809, 991, 1088 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 383, 963, 1446 |
| NmeAIII | GCCGAG | 1 cut(s) | 100 |
| NmuCI | GTSAC | 1 cut(s) | 571 |
| NruI | TCGCGA | 1 cut(s) | 609 |
| NsbI | TGCGCA | 2 cut(s) | 54, 398 |
| NspI | RCATGY | 1 cut(s) | 991 |
| OliI | CACNNNNGTG | 1 cut(s) | 764 |
| PaeI | GCATGC | 1 cut(s) | 991 |
| PagI | TCATGA | 1 cut(s) | 238 |
| PceI | AGGCCT | 1 cut(s) | 736 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1507 |
| PctI | GAATGC | 1 cut(s) | 703 |
| PdmI | GAANNNNTTC | 2 cut(s) | 827, 1249 |
| PfeI | GAWTC | 2 cut(s) | 335, 1014 |
| PkrI | GCNGC | 6 cut(s) | 28, 31, 90, 772, 930, 1117 |
| PleI | GAGTC | 2 cut(s) | 709, 1388 |
| PluTI | GGCGCC | 1 cut(s) | 1448 |
| PmaCI | CACGTG | 1 cut(s) | 958 |
| PmlI | CACGTG | 1 cut(s) | 958 |
| PpsI | GAGTC | 2 cut(s) | 709, 1388 |
| Ppu21I | YACGTR | 1 cut(s) | 958 |
| Psp124BI | GAGCTC | 1 cut(s) | 1379 |
| Psp6I | CCWGG | 3 cut(s) | 946, 1003, 1440 |
| PspCI | CACGTG | 1 cut(s) | 958 |
| PspGI | CCWGG | 3 cut(s) | 946, 1003, 1440 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 383, 963, 1446 |
| PspPI | GGNCC | 3 cut(s) | 272, 950, 1477 |
| PstI | CTGCAG | 1 cut(s) | 1285 |
| PsuI | RGATCY | 3 cut(s) | 7, 425, 492 |
| RruI | TCGCGA | 1 cut(s) | 609 |
| RsaI | GTAC | 1 cut(s) | 160 |
| RsaNI | GTAC | 1 cut(s) | 159 |
| RseI | CAYNNNNRTG | 3 cut(s) | 636, 764, 1530 |
| SacI | GAGCTC | 1 cut(s) | 1379 |
| SalI | GTCGAC | 1 cut(s) | 1509 |
| SaqAI | TTAA | 3 cut(s) | 912, 1277, 1537 |
| SatI | GCNGC | 6 cut(s) | 27, 30, 89, 771, 929, 1116 |
| Sau96I | GGNCC | 3 cut(s) | 272, 950, 1477 |
| SchI | GAGTC | 2 cut(s) | 709, 1388 |
| ScrFI | CCNGG | 5 cut(s) | 948, 1005, 1136, 1137, 1442 |
| SduI | GDGCHC | 4 cut(s) | 384, 1230, 1379, 1498 |
| SfaNI | GCATC | 8 cut(s) | 75, 153, 718, 904, 1016, 1102, 1312, 1354 |
| SfcI | CTRYAG | 1 cut(s) | 1281 |
| SfoI | GGCGCC | 1 cut(s) | 1446 |
| SinI | GGWCC | 2 cut(s) | 272, 950 |
| SmaI | CCCGGG | 1 cut(s) | 1137 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 636, 764, 1530 |
| SmlI | CTYRAG | 2 cut(s) | 911, 1196 |
| SmoI | CTYRAG | 2 cut(s) | 911, 1196 |
| SphI | GCATGC | 1 cut(s) | 991 |
| Sse9I | AATT | 5 cut(s) | 253, 576, 901, 935, 1288 |
| SseBI | AGGCCT | 1 cut(s) | 736 |
| SsiI | CCGC | 3 cut(s) | 26, 206, 1367 |
| SspDI | GGCGCC | 1 cut(s) | 1444 |
| SspMI | CTAG | 3 cut(s) | 23, 753, 1176 |
| SstI | GAGCTC | 1 cut(s) | 1379 |
| StuI | AGGCCT | 1 cut(s) | 736 |
| StyD4I | CCNGG | 5 cut(s) | 946, 1003, 1134, 1135, 1440 |
| StyI | CCWWGG | 1 cut(s) | 1021 |
| TaaI | ACNGT | 7 cut(s) | 373, 460, 473, 799, 869, 1384, 1429 |
| TaiI | ACGT | 5 cut(s) | 60, 395, 781, 960, 1534 |
| TaqI | TCGA | 7 cut(s) | 60, 376, 561, 748, 1012, 1206, 1510 |
| TaqII | GACCGA | 1 cut(s) | 791 |
| TasI | AATT | 5 cut(s) | 253, 576, 901, 935, 1288 |
| TauI | GCSGC | 1 cut(s) | 29 |
| TfiI | GAWTC | 2 cut(s) | 335, 1014 |
| Tru1I | TTAA | 3 cut(s) | 912, 1277, 1537 |
| Tru9I | TTAA | 3 cut(s) | 912, 1277, 1537 |
| TscAI | CASTG | 2 cut(s) | 376, 872 |
| TseFI | GTSAC | 1 cut(s) | 571 |
| TseI | GCWGC | 5 cut(s) | 29, 88, 770, 928, 1115 |
| Tsp45I | GTSAC | 1 cut(s) | 571 |
| TspDTI | ATGAA | 5 cut(s) | 197, 338, 1006, 1278, 1343 |
| TspGWI | ACGGA | 3 cut(s) | 264, 282, 1497 |
| TspMI | CCCGGG | 1 cut(s) | 1135 |
| TspRI | CASTG | 2 cut(s) | 376, 872 |
| Vha464I | CTTAAG | 1 cut(s) | 911 |
| VneI | GTGCAC | 1 cut(s) | 1494 |
| VpaK11BI | GGWCC | 2 cut(s) | 272, 950 |
| XapI | RAATTY | 1 cut(s) | 1288 |
| XceI | RCATGY | 1 cut(s) | 991 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XmaI | CCCGGG | 1 cut(s) | 1135 |
| XmiI | GTMKAC | 1 cut(s) | 1510 |
| XmnI | GAANNNNTTC | 2 cut(s) | 827, 1249 |
| XspI | CTAG | 3 cut(s) | 23, 753, 1176 |