Rmu_sc0009386.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009386.1
OG0000049
Physical Location & Seq
Reverse (-)
45125 .. 46668
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009386.1_g000009.1.cds

Sequence Viewer

Length: 1347 bp
atgcaccctcgcatcgataaaattttcaaaacttcatctgtttcaactgatctcactcctcatttgatggccggaattgggaatgattttgtggcatcgttgtggcaggcggactcaactctggtggccctcggggatgcaagggctacagcgtttcaggatcaccattggtacatggtgggacgattgttggcatcgaaagcgggctttccaggtttcaaggataccatatacaatatctggcatctcagatcaggccttaccattcaagatgctagtgagcgagatggtggctttgaatatgatggagacatgggtggtggtgcggggtcttcctcttgccttgaggaacaaggtagctctcaacatggtgggtgcgacgttaggcaggtggttaggatggatctgacagccctgaaaaggaaggaagaagagcagaggatcaaggtcgtgtttgatgttcgccgccggattcgatcctggatagttgttgaattttctccggtggtgcgatcggagttaactttcatatatgagaaggttaagggctattgtcgtgattgtggtttgtttatccatgatgcgatgggctgtgatacagcattgatcaaagaaaaggagaagcttttggaaagggaatcggtggcggctatggagggtctgtcattgactatgggttcggagggtcagggtgttgggactttaaggactgggagggaagctagagatggagtgtccattggtgtcttgcattccaagatgatgggaagacagctggtgatggagccggtcctgcaacagttgaagactcatgatcctttacttttcattccgctggatgtggggtcgaaagcattgacgttgagtccagtaatgaatggaagtgggaaagagaatatttgtgtggaattctcttccatgcaagcgatgtcaaatgggaggaaaagaaagtctaggtcaatgttgagcaggtttggaaataagctcttagcacttccggacccgtcgttggaggttggagagaatacttccttggttgtgcaacacaaaaatggaaaattactggtctcacctaggaataagaagattgggcgtccgaagggaagcaaaaataaggttaaaaatacagaggaccaggaagagaagaagattcacaagtataagaggaggggaaaagctttgtgttttgactcaactttggaagcattagctgtcgctgctgaaggtgtgactgggcatggaatcatgcaaacaggagaggatgaggaggctccaattgtggagtctccggttgcagagggagtggtagaaggtgaggcttcaccttctaccagtagtttaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

448

Amino Acids

49.07

Weight (kDa)

8.07

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 379
Acc36I ACCTGC 2 cut(s) 379, 960
AccIII TCCGGA 1 cut(s) 997
AciI CCGC 6 cut(s) 110, 203, 326, 466, 647, 833
AclWI GGATC 5 cut(s) 168, 411, 449, 471, 809
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 3 cut(s) 21, 494, 908
AcuI CTGAAG 1 cut(s) 1242
AcyI GRCGYC 1 cut(s) 1093
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 78, 420, 1009
AgsI TTSAA 7 cut(s) 28, 45, 220, 269, 299, 494, 805
AhdI GACNNNNNGTC 1 cut(s) 864
AjnI CCWGG 3 cut(s) 211, 479, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 1016, 1048
AluBI AGCT 7 cut(s) 360, 625, 722, 775, 985, 1178, 1211
AluI AGCT 7 cut(s) 360, 625, 722, 775, 985, 1178, 1211
Alw26I GTCTC 3 cut(s) 303, 1072, 1290
AlwI GGATC 5 cut(s) 168, 411, 449, 471, 809
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 997
AoxI GGCC 3 cut(s) 69, 126, 256
ApeKI GCWGC 1 cut(s) 1217
ApoI RAATTY 3 cut(s) 21, 494, 908
ArsI GACNNNNNNTTYG 2 cut(s) 661, 693
AspA2I CCTAGG 1 cut(s) 1073
AspS9I GGNCC 4 cut(s) 127, 790, 1000, 1132
AsuHPI GGTGA 5 cut(s) 155, 790, 1062, 1314, 1325
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 3 cut(s) 790, 1000, 1132
AvrII CCTAGG 1 cut(s) 1073
BbsI GAAGAC 3 cut(s) 324, 775, 812
BbvI GCAGC 1 cut(s) 1204
BccI CCATC 8 cut(s) 61, 281, 299, 394, 580, 722, 757, 775
BciT130I CCWGG 3 cut(s) 213, 481, 1136
BciVI GTATCC 1 cut(s) 217
BclI TGATCA 1 cut(s) 606
BcoDI GTCTC 3 cut(s) 303, 1072, 1290
BfaI CTAG 4 cut(s) 276, 723, 954, 1074
BfmI CTRYAG 1 cut(s) 147
BfuAI ACCTGC 2 cut(s) 379, 960
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 3 cut(s) 466, 648, 1218
BlnI CCTAGG 1 cut(s) 1073
BlsI GCNGC 3 cut(s) 467, 649, 1219
Bme1390I CCNGG 3 cut(s) 213, 481, 1136
Bme18I GGWCC 3 cut(s) 790, 1000, 1132
BmeRI GACNNNNNGTC 1 cut(s) 864
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 4 cut(s) 127, 790, 1000, 1132
BmiI GGNNCC 3 cut(s) 786, 1002, 1272
BmrFI CCNGG 3 cut(s) 213, 481, 1136
BmrI ACTGGG 2 cut(s) 720, 1242
BmsI GCATC 7 cut(s) 21, 104, 127, 203, 253, 262, 571
BmuI ACTGGG 2 cut(s) 720, 1242
BpiI GAAGAC 3 cut(s) 324, 775, 812
BpuEI CTTGAG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 1093
BsaI GGTCTC 1 cut(s) 1072
BsaJI CCNNGG 3 cut(s) 130, 1032, 1073
BsaWI WCCGGW 3 cut(s) 502, 997, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 420, 1009
Bse118I RCCGGY 1 cut(s) 787
Bse1I ACTGG 5 cut(s) 715, 869, 1068, 1237, 1332
BseAI TCCGGA 1 cut(s) 997
BseBI CCWGG 3 cut(s) 213, 481, 1136
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 130, 1032, 1073
BseGI GGATG 4 cut(s) 142, 405, 844, 1267
BseLI CCNNNNNNNGG 3 cut(s) 78, 420, 1009
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 5 cut(s) 715, 869, 1068, 1237, 1332
BseRI GAGGAG 3 cut(s) 48, 1180, 1280
BseXI GCAGC 1 cut(s) 1204
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 3 cut(s) 71, 128, 258
BshVI ATCGAT 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 515
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 6 cut(s) 72, 469, 503, 788, 998, 1289
BslFI GGGAC 2 cut(s) 195, 712
BslI CCNNNNNNNGG 3 cut(s) 78, 420, 1009
BsmAI GTCTC 3 cut(s) 303, 1072, 1290
BsmFI GGGAC 2 cut(s) 195, 712
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 3 cut(s) 71, 128, 258
Bso31I GGTCTC 1 cut(s) 1072
BsoBI CYCGRG 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 997
Bsp143I GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
BspACI CCGC 6 cut(s) 110, 203, 326, 466, 647, 833
BspANI GGCC 3 cut(s) 71, 128, 258
BspCNI CTCAG 1 cut(s) 261
BspDI ATCGAT 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 997
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 3 cut(s) 786, 1002, 1272
BspMI ACCTGC 2 cut(s) 379, 960
BspPI GGATC 5 cut(s) 168, 411, 449, 471, 809
BspQI GCTCTTC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 1072
BsrFI RCCGGY 1 cut(s) 787
BsrI ACTGG 5 cut(s) 715, 869, 1068, 1237, 1332
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 3 cut(s) 130, 1032, 1073
BssMI GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
BssNI GRCGYC 1 cut(s) 1093
BssT1I CCWWGG 2 cut(s) 1032, 1073
Bst2UI CCWGG 3 cut(s) 213, 481, 1136
Bst4CI ACNGT 1 cut(s) 801
Bst6I CTCTTC 3 cut(s) 426, 919, 1134
BstACI GRCGYC 1 cut(s) 1093
BstC8I GCNNGC 3 cut(s) 108, 205, 924
BstDEI CTNAG 2 cut(s) 248, 988
BstF5I GGATG 4 cut(s) 142, 405, 844, 1267
BstKTI GATC 9 cut(s) 52, 163, 254, 406, 444, 479, 515, 609, 817
BstMAI GTCTC 3 cut(s) 303, 1072, 1290
BstMBI GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 3 cut(s) 200, 793, 1217
BstNI CCWGG 3 cut(s) 213, 481, 1136
BstSCI CCNGG 3 cut(s) 211, 479, 1134
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 1204
BstV2I GAAGAC 3 cut(s) 324, 775, 812
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 1 cut(s) 403
Bsu15I ATCGAT 1 cut(s) 15
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 3 cut(s) 71, 128, 258
BsuTUI ATCGAT 1 cut(s) 15
BtgZI GCGATG 2 cut(s) 599, 941
BtsCI GGATG 4 cut(s) 142, 405, 844, 1267
BveI ACCTGC 2 cut(s) 379, 960
Cac8I GCNNGC 3 cut(s) 108, 205, 924
CciI TCATGA 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 4 cut(s) 127, 790, 1000, 1132
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 1 cut(s) 1082
Csp6I GTAC 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 8 cut(s) 175, 313, 368, 578, 812, 919, 1238, 1246
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 248, 988
DpnI GATC 9 cut(s) 51, 162, 253, 405, 443, 478, 514, 608, 816
DpnII GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
DriI GACNNNNNGTC 1 cut(s) 864
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 3 cut(s) 426, 919, 1134
Eam1105I GACNNNNNGTC 1 cut(s) 864
EarI CTCTTC 3 cut(s) 426, 919, 1134
EciI GGCGGA 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 1032, 1073
Eco147I AGGCCT 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 1072
Eco47I GGWCC 3 cut(s) 790, 1000, 1132
Eco57I CTGAAG 1 cut(s) 1242
Eco88I CYCGRG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 3 cut(s) 211, 479, 1134
EcoT14I CCWWGG 2 cut(s) 1032, 1073
ErhI CCWWGG 2 cut(s) 1032, 1073
FaeI CATG 8 cut(s) 178, 316, 371, 581, 815, 922, 1241, 1249
FaqI GGGAC 2 cut(s) 195, 712
FatI CATG 8 cut(s) 174, 312, 367, 577, 811, 918, 1237, 1245
FauI CCCGC 2 cut(s) 196, 319
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 3 cut(s) 466, 648, 1218
FokI GGATG 4 cut(s) 149, 412, 851, 1274
Fsp4HI GCNGC 3 cut(s) 466, 648, 1218
FspBI CTAG 4 cut(s) 276, 723, 954, 1074
GluI GCNGC 3 cut(s) 466, 648, 1218
HaeIII GGCC 3 cut(s) 71, 128, 258
HapII CCGG 6 cut(s) 72, 469, 503, 788, 998, 1289
HgaI GACGC 1 cut(s) 1082
Hin1I GRCGYC 1 cut(s) 1093
Hin1II CATG 8 cut(s) 178, 316, 371, 581, 815, 922, 1241, 1249
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HindIII AAGCTT 2 cut(s) 623, 1176
HinfI GANTC 9 cut(s) 113, 472, 638, 808, 865, 1150, 1190, 1242, 1283
HpaI GTTAAC 1 cut(s) 522
HpaII CCGG 6 cut(s) 72, 469, 503, 788, 998, 1289
HphI GGTGA 5 cut(s) 155, 790, 1062, 1314, 1325
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 5 cut(s) 251, 408, 517, 682, 1098
Hpy188III TCNNGA 5 cut(s) 158, 269, 557, 812, 998
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 2 cut(s) 383, 1009
HpyAV CCTTC 6 cut(s) 418, 532, 1093, 1217, 1304, 1335
HpyCH4III ACNGT 1 cut(s) 801
HpyCH4IV ACGT 2 cut(s) 381, 860
HpyCH4V TGCA 8 cut(s) 4, 140, 751, 796, 922, 1042, 1249, 1295
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 793, 1217
HpyF3I CTNAG 2 cut(s) 248, 988
HpySE526I ACGT 2 cut(s) 381, 860
Hsp92I GRCGYC 1 cut(s) 1093
Hsp92II CATG 8 cut(s) 178, 316, 371, 581, 815, 922, 1241, 1249
Kpn2I TCCGGA 1 cut(s) 997
Ksp22I TGATCA 1 cut(s) 606
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 2 cut(s) 784, 1276
Lsp1109I GCAGC 1 cut(s) 1204
LweI GCATC 7 cut(s) 21, 104, 127, 203, 253, 262, 571
MaeI CTAG 4 cut(s) 276, 723, 954, 1074
MaeII ACGT 2 cut(s) 381, 860
MaeIII GTNAC 1 cut(s) 1228
MalI GATC 9 cut(s) 51, 162, 253, 405, 443, 478, 514, 608, 816
MboI GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
MfeI CAATTG 1 cut(s) 1275
MflI RGATCY 1 cut(s) 403
MluCI AATT 7 cut(s) 21, 75, 494, 908, 1058, 1275, 1341
MlyI GAGTC 5 cut(s) 107, 802, 874, 1184, 1292
MmeI TCCRAC 2 cut(s) 990, 997
MroI TCCGGA 1 cut(s) 997
MseI TTAA 6 cut(s) 521, 543, 704, 1119, 1340, 1345
MslI CAYNNNNRTG 2 cut(s) 100, 1050
MspA1I CMGCKG 2 cut(s) 775, 835
MspI CCGG 6 cut(s) 72, 469, 503, 788, 998, 1289
MspR9I CCNGG 3 cut(s) 213, 481, 1136
MunI CAATTG 1 cut(s) 1275
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 3 cut(s) 213, 481, 1136
MwoI GCNNNNNNNGC 3 cut(s) 200, 793, 1217
NdeII GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
NlaIII CATG 8 cut(s) 178, 316, 371, 581, 815, 922, 1241, 1249
NlaIV GGNNCC 3 cut(s) 786, 1002, 1272
NmuCI GTSAC 1 cut(s) 1228
PagI TCATGA 1 cut(s) 811
PaqCI CACCTGC 1 cut(s) 379
PceI AGGCCT 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 426
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 4 cut(s) 472, 638, 1150, 1242
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 3 cut(s) 467, 649, 1219
Ple19I CGATCG 1 cut(s) 515
PleI GAGTC 5 cut(s) 107, 802, 873, 1184, 1291
PpsI GAGTC 5 cut(s) 107, 802, 873, 1184, 1291
Psp6I CCWGG 3 cut(s) 211, 479, 1134
PspGI CCWGG 3 cut(s) 211, 479, 1134
PspN4I GGNNCC 3 cut(s) 786, 1002, 1272
PspPI GGNCC 4 cut(s) 127, 790, 1000, 1132
PsuI RGATCY 1 cut(s) 403
PvuI CGATCG 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 775
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 2 cut(s) 100, 1050
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 6 cut(s) 521, 543, 704, 1119, 1340, 1345
SatI GCNGC 3 cut(s) 466, 648, 1218
Sau3AI GATC 9 cut(s) 49, 160, 251, 403, 441, 476, 512, 606, 814
Sau96I GGNCC 4 cut(s) 127, 790, 1000, 1132
SchI GAGTC 5 cut(s) 107, 802, 874, 1184, 1292
ScrFI CCNGG 3 cut(s) 213, 481, 1136
SfaNI GCATC 7 cut(s) 21, 104, 127, 203, 253, 262, 571
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 3 cut(s) 790, 1000, 1132
SmiMI CAYNNNNRTG 2 cut(s) 100, 1050
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 7 cut(s) 21, 75, 494, 908, 1058, 1275, 1341
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 6 cut(s) 110, 203, 326, 466, 647, 833
SspI AATATT 1 cut(s) 898
SspMI CTAG 4 cut(s) 276, 723, 954, 1074
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 211, 479, 1134
StyI CCWWGG 2 cut(s) 1032, 1073
TaaI ACNGT 1 cut(s) 801
TaiI ACGT 2 cut(s) 384, 863
TaqI TCGA 4 cut(s) 15, 197, 475, 848
TasI AATT 7 cut(s) 21, 75, 494, 908, 1058, 1275, 1341
TauI GCSGC 2 cut(s) 468, 650
TfiI GAWTC 4 cut(s) 472, 638, 1150, 1242
Tru1I TTAA 6 cut(s) 521, 543, 704, 1119, 1340, 1345
Tru9I TTAA 6 cut(s) 521, 543, 704, 1119, 1340, 1345
TseFI GTSAC 1 cut(s) 1228
TseI GCWGC 1 cut(s) 1217
Tsp45I GTSAC 1 cut(s) 1228
TspDTI ATGAA 4 cut(s) 24, 517, 817, 890
VpaK11BI GGWCC 3 cut(s) 790, 1000, 1132
XapI RAATTY 3 cut(s) 21, 494, 908
XmaJI CCTAGG 1 cut(s) 1073
XspI CTAG 4 cut(s) 276, 723, 954, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.