Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 671 |
| AciI | CCGC | 7 cut(s) | 65, 68, 77, 424, 430, 632, 661 |
| AcoI | YGGCCR | 3 cut(s) | 36, 370, 639 |
| AcsI | RAATTY | 1 cut(s) | 383 |
| AcuI | CTGAAG | 1 cut(s) | 596 |
| AfaI | GTAC | 1 cut(s) | 459 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 405, 439, 453, 454 |
| AgeI | ACCGGT | 1 cut(s) | 17 |
| AgsI | TTSAA | 2 cut(s) | 164, 169 |
| AjnI | CCWGG | 3 cut(s) | 47, 432, 641 |
| AluBI | AGCT | 2 cut(s) | 610, 687 |
| AluI | AGCT | 2 cut(s) | 610, 687 |
| Alw26I | GTCTC | 2 cut(s) | 263, 654 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 546 |
| Ama87I | CYCGRG | 1 cut(s) | 500 |
| Aor13HI | TCCGGA | 1 cut(s) | 671 |
| AoxI | GGCC | 6 cut(s) | 36, 206, 370, 396, 620, 639 |
| ApeKI | GCWGC | 1 cut(s) | 496 |
| ApoI | RAATTY | 1 cut(s) | 383 |
| AsiGI | ACCGGT | 1 cut(s) | 17 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 3 cut(s) | 206, 397, 620 |
| AsuHPI | GGTGA | 4 cut(s) | 254, 499, 604, 646 |
| AvaI | CYCGRG | 1 cut(s) | 500 |
| BalI | TGGCCA | 2 cut(s) | 372, 641 |
| BanII | GRGCYC | 1 cut(s) | 129 |
| BbvI | GCAGC | 1 cut(s) | 508 |
| BccI | CCATC | 3 cut(s) | 456, 575, 631 |
| BceAI | ACGGC | 2 cut(s) | 90, 193 |
| BciT130I | CCWGG | 3 cut(s) | 49, 434, 643 |
| BciVI | GTATCC | 1 cut(s) | 436 |
| BclI | TGATCA | 1 cut(s) | 388 |
| BcoDI | GTCTC | 2 cut(s) | 263, 654 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BfmI | CTRYAG | 2 cut(s) | 217, 538 |
| BfuI | GTATCC | 1 cut(s) | 436 |
| BglII | AGATCT | 1 cut(s) | 294 |
| BisI | GCNGC | 4 cut(s) | 66, 78, 497, 662 |
| BlsI | GCNGC | 4 cut(s) | 67, 79, 498, 663 |
| Bme1390I | CCNGG | 3 cut(s) | 49, 434, 643 |
| BmeT110I | CYCGRG | 1 cut(s) | 500 |
| BmgT120I | GGNCC | 3 cut(s) | 206, 397, 620 |
| BmiI | GGNNCC | 2 cut(s) | 428, 676 |
| BmrFI | CCNGG | 3 cut(s) | 49, 434, 643 |
| BmsI | GCATC | 4 cut(s) | 459, 556, 566, 677 |
| BpmI | CTGGAG | 1 cut(s) | 165 |
| BsaBI | GATNNNNATC | 2 cut(s) | 293, 447 |
| BsaJI | CCNNGG | 3 cut(s) | 48, 209, 489 |
| BsaWI | WCCGGW | 3 cut(s) | 17, 625, 671 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 405, 439, 453, 454 |
| Bse118I | RCCGGY | 2 cut(s) | 17, 319 |
| Bse1I | ACTGG | 1 cut(s) | 678 |
| Bse8I | GATNNNNATC | 2 cut(s) | 293, 447 |
| BseAI | TCCGGA | 1 cut(s) | 671 |
| BseBI | CCWGG | 3 cut(s) | 49, 434, 643 |
| BseDI | CCNNGG | 3 cut(s) | 48, 209, 489 |
| BseGI | GGATG | 3 cut(s) | 474, 581, 668 |
| BseJI | GATNNNNATC | 2 cut(s) | 293, 447 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 405, 439, 453, 454 |
| BseNI | ACTGG | 1 cut(s) | 678 |
| BseX3I | CGGCCG | 1 cut(s) | 36 |
| BseXI | GCAGC | 1 cut(s) | 508 |
| BsgI | GTGCAG | 1 cut(s) | 515 |
| Bsh1285I | CGRYCG | 1 cut(s) | 39 |
| BshFI | GGCC | 6 cut(s) | 38, 208, 372, 398, 622, 641 |
| BshTI | ACCGGT | 1 cut(s) | 17 |
| BsiEI | CGRYCG | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 1 cut(s) | 500 |
| BsiSI | CCGG | 5 cut(s) | 18, 35, 320, 626, 672 |
| BslFI | GGGAC | 2 cut(s) | 85, 557 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 405, 439, 453, 454 |
| BsmAI | GTCTC | 2 cut(s) | 263, 654 |
| BsmFI | GGGAC | 2 cut(s) | 85, 557 |
| BsmI | GAATGC | 1 cut(s) | 346 |
| BsnI | GGCC | 6 cut(s) | 38, 208, 372, 398, 622, 641 |
| BsoBI | CYCGRG | 1 cut(s) | 500 |
| Bsp1286I | GDGCHC | 1 cut(s) | 129 |
| Bsp13I | TCCGGA | 1 cut(s) | 671 |
| Bsp143I | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| BspACI | CCGC | 7 cut(s) | 65, 68, 77, 424, 430, 632, 661 |
| BspANI | GGCC | 6 cut(s) | 38, 208, 372, 398, 622, 641 |
| BspEI | TCCGGA | 1 cut(s) | 671 |
| BspLI | GGNNCC | 2 cut(s) | 428, 676 |
| BspMAI | CTGCAG | 1 cut(s) | 542 |
| BsrFI | RCCGGY | 2 cut(s) | 17, 319 |
| BsrI | ACTGG | 1 cut(s) | 678 |
| BssAI | RCCGGY | 2 cut(s) | 17, 319 |
| BssECI | CCNNGG | 3 cut(s) | 48, 209, 489 |
| BssMI | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| BssT1I | CCWWGG | 1 cut(s) | 489 |
| Bst2UI | CCWGG | 3 cut(s) | 49, 434, 643 |
| Bst4CI | ACNGT | 3 cut(s) | 95, 274, 548 |
| Bst6I | CTCTTC | 2 cut(s) | 49, 490 |
| BstC8I | GCNNGC | 1 cut(s) | 666 |
| BstDSI | CCRYGG | 1 cut(s) | 209 |
| BstF5I | GGATG | 3 cut(s) | 474, 581, 668 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstKTI | GATC | 5 cut(s) | 151, 184, 297, 391, 507 |
| BstMAI | GTCTC | 2 cut(s) | 263, 654 |
| BstMBI | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| BstMCI | CGRYCG | 1 cut(s) | 39 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 35, 74, 205, 638 |
| BstNI | CCWGG | 3 cut(s) | 49, 434, 643 |
| BstNSI | RCATGY | 1 cut(s) | 668 |
| BstSCI | CCNGG | 3 cut(s) | 47, 432, 641 |
| BstSFI | CTRYAG | 2 cut(s) | 217, 538 |
| BstV1I | GCAGC | 1 cut(s) | 508 |
| BstX2I | RGATCY | 1 cut(s) | 294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 143 |
| BstYI | RGATCY | 1 cut(s) | 294 |
| BstZI | CGGCCG | 1 cut(s) | 36 |
| BsuI | GTATCC | 1 cut(s) | 436 |
| BsuRI | GGCC | 6 cut(s) | 38, 208, 372, 398, 622, 641 |
| BtgI | CCRYGG | 1 cut(s) | 209 |
| BtgZI | GCGATG | 1 cut(s) | 594 |
| BtsCI | GGATG | 3 cut(s) | 474, 581, 668 |
| BtsI | GCAGTG | 1 cut(s) | 663 |
| BtsIMutI | CAGTG | 1 cut(s) | 663 |
| Cac8I | GCNNGC | 1 cut(s) | 666 |
| CaiI | CAGNNNCTG | 1 cut(s) | 546 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr10I | RCCGGY | 2 cut(s) | 17, 319 |
| Cfr13I | GGNCC | 3 cut(s) | 206, 397, 620 |
| CseI | GACGC | 1 cut(s) | 149 |
| Csp6I | GTAC | 1 cut(s) | 458 |
| CspAI | ACCGGT | 1 cut(s) | 17 |
| CviAII | CATG | 5 cut(s) | 137, 173, 465, 563, 665 |
| CviQI | GTAC | 1 cut(s) | 458 |
| DpnI | GATC | 5 cut(s) | 150, 183, 296, 390, 506 |
| DpnII | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| EaeI | YGGCCR | 3 cut(s) | 36, 370, 639 |
| EagI | CGGCCG | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 2 cut(s) | 49, 490 |
| EarI | CTCTTC | 2 cut(s) | 49, 490 |
| EclXI | CGGCCG | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 1 cut(s) | 489 |
| Eco24I | GRGCYC | 1 cut(s) | 129 |
| Eco52I | CGGCCG | 1 cut(s) | 36 |
| Eco57I | CTGAAG | 1 cut(s) | 596 |
| Eco88I | CYCGRG | 1 cut(s) | 500 |
| EcoRII | CCWGG | 3 cut(s) | 47, 432, 641 |
| EcoT14I | CCWWGG | 1 cut(s) | 489 |
| EcoT22I | ATGCAT | 1 cut(s) | 670 |
| EcoT38I | GRGCYC | 1 cut(s) | 129 |
| ErhI | CCWWGG | 1 cut(s) | 489 |
| FaeI | CATG | 5 cut(s) | 140, 176, 468, 566, 668 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 594, 626 |
| FaqI | GGGAC | 2 cut(s) | 85, 557 |
| FatI | CATG | 5 cut(s) | 136, 172, 464, 562, 664 |
| FauI | CCCGC | 1 cut(s) | 61 |
| FbaI | TGATCA | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 4 cut(s) | 66, 78, 497, 662 |
| FokI | GGATG | 3 cut(s) | 481, 588, 655 |
| FriOI | GRGCYC | 1 cut(s) | 129 |
| Fsp4HI | GCNGC | 4 cut(s) | 66, 78, 497, 662 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 4 cut(s) | 66, 78, 497, 662 |
| GsuI | CTGGAG | 1 cut(s) | 165 |
| HaeIII | GGCC | 6 cut(s) | 38, 208, 372, 398, 622, 641 |
| HapII | CCGG | 5 cut(s) | 18, 35, 320, 626, 672 |
| HgaI | GACGC | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1II | CATG | 5 cut(s) | 140, 176, 468, 566, 668 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HinfI | GANTC | 2 cut(s) | 41, 552 |
| HpaII | CCGG | 5 cut(s) | 18, 35, 320, 626, 672 |
| HphI | GGTGA | 4 cut(s) | 254, 499, 604, 646 |
| Hpy188I | TCNGA | 3 cut(s) | 408, 453, 615 |
| Hpy188III | TCNNGA | 2 cut(s) | 672, 714 |
| Hpy99I | CGWCG | 2 cut(s) | 408, 574 |
| HpyAV | CCTTC | 1 cut(s) | 410 |
| HpyCH4III | ACNGT | 3 cut(s) | 95, 274, 548 |
| HpyCH4V | TGCA | 6 cut(s) | 85, 199, 305, 496, 540, 668 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 35, 74, 205, 638 |
| Hsp92II | CATG | 5 cut(s) | 140, 176, 468, 566, 668 |
| HspAI | GCGC | 1 cut(s) | 5 |
| Kpn2I | TCCGGA | 1 cut(s) | 671 |
| Ksp22I | TGATCA | 1 cut(s) | 388 |
| Kzo9I | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| LmnI | GCTCC | 2 cut(s) | 692, 698 |
| Lsp1109I | GCAGC | 1 cut(s) | 508 |
| LweI | GCATC | 4 cut(s) | 459, 556, 566, 677 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeIII | GTNAC | 1 cut(s) | 185 |
| MalI | GATC | 5 cut(s) | 150, 183, 296, 390, 506 |
| MboI | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| MboII | GAAGA | 3 cut(s) | 36, 304, 477 |
| MflI | RGATCY | 1 cut(s) | 294 |
| MhlI | GDGCHC | 1 cut(s) | 129 |
| MlsI | TGGCCA | 2 cut(s) | 372, 641 |
| MluCI | AATT | 2 cut(s) | 164, 383 |
| MluNI | TGGCCA | 2 cut(s) | 372, 641 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MmeI | TCCRAC | 2 cut(s) | 386, 420 |
| MnlI | CCTC | 6 cut(s) | 197, 402, 409, 447, 521, 622 |
| Mox20I | TGGCCA | 2 cut(s) | 372, 641 |
| Mph1103I | ATGCAT | 1 cut(s) | 670 |
| MroI | TCCGGA | 1 cut(s) | 671 |
| MscI | TGGCCA | 2 cut(s) | 372, 641 |
| MseI | TTAA | 1 cut(s) | 528 |
| Msp20I | TGGCCA | 2 cut(s) | 372, 641 |
| MspA1I | CMGCKG | 1 cut(s) | 424 |
| MspI | CCGG | 5 cut(s) | 18, 35, 320, 626, 672 |
| MspR9I | CCNGG | 3 cut(s) | 49, 434, 643 |
| Mva1269I | GAATGC | 1 cut(s) | 346 |
| MvaI | CCWGG | 3 cut(s) | 49, 434, 643 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 35, 74, 205, 638 |
| NdeII | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| NlaIII | CATG | 5 cut(s) | 140, 176, 468, 566, 668 |
| NlaIV | GGNNCC | 2 cut(s) | 428, 676 |
| NsiI | ATGCAT | 1 cut(s) | 670 |
| NspI | RCATGY | 1 cut(s) | 668 |
| PaeI | GCATGC | 1 cut(s) | 668 |
| PctI | GAATGC | 1 cut(s) | 346 |
| PfeI | GAWTC | 1 cut(s) | 552 |
| PinAI | ACCGGT | 1 cut(s) | 17 |
| PkrI | GCNGC | 4 cut(s) | 67, 79, 498, 663 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| Psp6I | CCWGG | 3 cut(s) | 47, 432, 641 |
| PspGI | CCWGG | 3 cut(s) | 47, 432, 641 |
| PspN4I | GGNNCC | 2 cut(s) | 428, 676 |
| PspPI | GGNCC | 3 cut(s) | 206, 397, 620 |
| PstI | CTGCAG | 1 cut(s) | 542 |
| PstNI | CAGNNNCTG | 1 cut(s) | 546 |
| PsuI | RGATCY | 1 cut(s) | 294 |
| RsaI | GTAC | 1 cut(s) | 459 |
| RsaNI | GTAC | 1 cut(s) | 458 |
| SaqAI | TTAA | 1 cut(s) | 528 |
| SatI | GCNGC | 4 cut(s) | 66, 78, 497, 662 |
| Sau3AI | GATC | 5 cut(s) | 148, 181, 294, 388, 504 |
| Sau96I | GGNCC | 3 cut(s) | 206, 397, 620 |
| SchI | GAGTC | 1 cut(s) | 35 |
| ScrFI | CCNGG | 3 cut(s) | 49, 434, 643 |
| SduI | GDGCHC | 1 cut(s) | 129 |
| SetI | ASST | 4 cut(s) | 64, 244, 612, 689 |
| SfaNI | GCATC | 4 cut(s) | 459, 556, 566, 677 |
| SfcI | CTRYAG | 2 cut(s) | 217, 538 |
| SphI | GCATGC | 1 cut(s) | 668 |
| Sse9I | AATT | 2 cut(s) | 164, 383 |
| SsiI | CCGC | 7 cut(s) | 65, 68, 77, 424, 430, 632, 661 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StyD4I | CCNGG | 3 cut(s) | 47, 432, 641 |
| StyI | CCWWGG | 1 cut(s) | 489 |
| TaaI | ACNGT | 3 cut(s) | 95, 274, 548 |
| TasI | AATT | 2 cut(s) | 164, 383 |
| TauI | GCSGC | 3 cut(s) | 68, 80, 664 |
| TfiI | GAWTC | 1 cut(s) | 552 |
| Tru1I | TTAA | 1 cut(s) | 528 |
| Tru9I | TTAA | 1 cut(s) | 528 |
| TscAI | CASTG | 1 cut(s) | 663 |
| TseI | GCWGC | 1 cut(s) | 496 |
| TspDTI | ATGAA | 2 cut(s) | 189, 305 |
| TspGWI | ACGGA | 1 cut(s) | 216 |
| TspRI | CASTG | 1 cut(s) | 663 |
| XapI | RAATTY | 1 cut(s) | 383 |
| XceI | RCATGY | 1 cut(s) | 668 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 649 |
| XspI | CTAG | 1 cut(s) | 59 |
| Zsp2I | ATGCAT | 1 cut(s) | 670 |