Rmu_sc0002199.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002199.1
OG0000049
Physical Location & Seq
Forward (+)
23255 .. 31766
8512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002199.1_g000007.1.cds

Sequence Viewer

Length: 2154 bp
atgtcggatcccattgccagccttgccgtggcttttactctatctgaagatgcacacgttgaccttggcttggcctgggaagaggcgttgcaagatccctatcattacatggtggggcggctgcttaccaggaggccggatattgttggttttcttggcaccatgcatacgatatggagaatgagagatggcctgtcaatccatgcagttggggatcgctttgtgttccagtttgatcgtgaggttgaccaaaatggatacctgcatgggggtccctggttttacggtaatataatgatgctgctagcaccgtatgatggcatctatgatgttgaggccattctgatccattctatggagatttggatcacaattaagggtttgcctctagggttgcgcaaaaaacttgcactctcgatggttaggtctgctattggaagggtgttgcgtattgatcaactggccctgaaccgcaaagatgaagaacaacgagttcgtttgatcattgacaccaggcggcggtttagggttttcagaagcttctctttccctgcagcagtcaaagtgaaactgtcgattgcttatgagagggttcgaggtctttgcagggattgtgggaggtttgaacatcccactgatagatgtgaccgtatgtttgccaaggaaagggaggctatgctggcttctcctctggtgaatgcaatgatgggcttatccctgttggctgctaatcctagggcggtagtggatgaatcgggtaccctcgtgggtgaggctagggtttctgaacctagggttggtttttttgggaatacggctttatcgggtaacagtctctttccagctggggctgtagatagagcctctcaacacaaaaaccaagatgcattcttctttgctcatctcaattctagactacaagcagccagtctgttgaagaagcttgttaattcggctcatgctttaggcccaaatcatcctttggtgagcactgtggcaactggttctcttagggatcgtttcattcaggcttgcaaaaaaggtaggtttatggttcttggtatagatggtgatgcgccgggtatcagtggcataaaacgatctgctgatgtccctctggtgcgttcagggaagaagttgcttgccccaactgctctggaaatggatgggatgggtgagctctctctctgtcttcctcagaacgatgacaggttgataatctctcctcagaagaaaaagaaatctggacggccaaaagggtccaaaaataaggcaagggtggtcaacagtcctaaggtcctgaagacttcacgtgtgaaggttaaagggaggaaacgcttcctcaaaatacttgaagctaaggatatggggactgatgctctgccttctcaggagcatactgaaaccattgaagaggtgatgacttcaatggtggagatacctgagatgggaaagagtgtggggattgagatggaagagcaggaggtggcttctactctagctacaaagagtctgaatcctggtgaggaggttttcgagcgacggtgggagtgggaagaagaagaagaagatgaggtttctcttaagaagaagatgaagaagaaagagcctaaagacttgtccctcccagctactattgttgttgtggtcgaagatgcgaatgaggaagaggaagaaattgaagacggacgtactgagccctcaagcgaggaggacacaggcaggcagcagggtaatagtctggtcggcagtcccgtccagactacagctcggttggcagtcccatccgatgcttcaactggttgggagtcccttccagatgacttgagattagccgagattgcgtccaggctcaaggactttggaaatcagcgcttccgtttttgtccaacttaccctgaccctctctctctcctctccctcttcccccgcgttgccctccctttttctttttccgatttcttcaccttccggcgtctgattgacgtgattccagttgtccttggaccgtctcttcctcctctatacgatggtatcagtgggtatcgttttcggctatctccggcgggaaaattggttctattaggagcgcctcgagtcactgatcatcttccctcaagacttctagctgaaatttccacgtttggaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

717

Amino Acids

79.82

Weight (kDa)

8.51

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000049)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09850 FvH4_2g12512 FvH4_2g19830 FvH4_2g21281 FvH4_2g30300 FvH4_3g04012 FvH4_3g12601 FvH4_3g25620 FvH4_3g28881 FvH4_3g29932 FvH4_4g12651 FvH4_5g27100 FvH4_6g03011 FvH4_6g10710 FvH4_6g10711 FvH4_6g19991 FvH4_6g25461 FvH4_6g32661 FvH4_7g16371
rosa_chinensis RchiOBHm_Chr1g0347111 RchiOBHm_Chr1g0350781 RchiOBHm_Chr1g0350971 RchiOBHm_Chr2g0123951 RchiOBHm_Chr4g0397591 RchiOBHm_Chr5g0032121 RchiOBHm_Chr6g0265951
rosa_laevigata RLG00000000709 RLG00000001093 RLG00000001244 RLG00000002381 RLG00000003581 RLG00000003584 RLG00000004011 RLG00000004587 RLG00000005734 RLG00000007804 RLG00000008145 RLG00000008422 RLG00000008949 RLG00000009240 RLG00000009334 RLG00000009773 RLG00000010531 RLG00000012000 RLG00000012913 RLG00000013188 RLG00000013289 RLG00000013302 RLG00000013943 RLG00000016032 RLG00000016277 RLG00000016479 RLG00000017591 RLG00000017899 RLG00000018452 RLG00000018455 RLG00000019343 RLG00000021649 RLG00000023222 RLG00000023677 RLG00000024058 RLG00000024433 RLG00000026719 RLG00000027778 RLG00000028367 RLG00000028761 RLG00000029079 RLG00000030238 RLG00000030452 RLG00000030719 RLG00000030834 RLG00000031739 RLG00000032099 RLG00000033644 RLG00000033713 RLG00000034081 RLG00000035108 RLG00000035250 RLG00000035711 RLG00000036556 RLG00000036747
rosa_multiflora Rmu_co8042282.1_g000001 Rmu_co8251111.1_g000001 Rmu_co8268445.1_g000001 Rmu_co8273215.1_g000001 Rmu_co8469153.1_g000002 Rmu_sc0000035.1_g000023 Rmu_sc0000092.1_g000002 Rmu_sc0000166.1_g000008 Rmu_sc0000260.1_g000017 Rmu_sc0000317.1_g000014 Rmu_sc0000470.1_g000023 Rmu_sc0000533.1_g000060 Rmu_sc0000539.1_g000011 Rmu_sc0000546.1_g000022 Rmu_sc0000571.1_g000022 Rmu_sc0000610.1_g000019 Rmu_sc0000706.1_g000038 Rmu_sc0000843.1_g000005 Rmu_sc0000882.1_g000008 Rmu_sc0000928.1_g000014 Rmu_sc0000928.1_g000015 Rmu_sc0001140.1_g000009 Rmu_sc0001161.1_g000015 Rmu_sc0001179.1_g000041 Rmu_sc0001296.1_g000014 Rmu_sc0001373.1_g000023 Rmu_sc0001433.1_g000015 Rmu_sc0001519.1_g000009 Rmu_sc0001878.1_g000011 Rmu_sc0002112.1_g000014 Rmu_sc0002141.1_g000030 Rmu_sc0002148.1_g000029 Rmu_sc0002156.1_g000014 Rmu_sc0002199.1_g000007 Rmu_sc0002586.1_g000033 Rmu_sc0002620.1_g000008 Rmu_sc0002646.1_g000010 Rmu_sc0002800.1_g000026 Rmu_sc0002921.1_g000001 Rmu_sc0002964.1_g000009 Rmu_sc0002989.1_g000009 Rmu_sc0003133.1_g000002 Rmu_sc0003238.1_g000030 Rmu_sc0003314.1_g000011 Rmu_sc0003314.1_g000012 Rmu_sc0003314.1_g000028 Rmu_sc0003458.1_g000003 Rmu_sc0003499.1_g000034 Rmu_sc0003610.1_g000040 Rmu_sc0003859.1_g000006 Rmu_sc0003971.1_g000002 Rmu_sc0004161.1_g000006 Rmu_sc0004250.1_g000023 Rmu_sc0004467.1_g000071 Rmu_sc0004498.1_g000004 Rmu_sc0004521.1_g000024 Rmu_sc0004529.1_g000030 Rmu_sc0004547.1_g000009 Rmu_sc0004835.1_g000034 Rmu_sc0004944.1_g000012 Rmu_sc0005030.1_g000005 Rmu_sc0005030.1_g000006 Rmu_sc0005137.1_g000033 Rmu_sc0005294.1_g000013 Rmu_sc0005416.1_g000020 Rmu_sc0005426.1_g000010 Rmu_sc0005432.1_g000001 Rmu_sc0005450.1_g000020 Rmu_sc0005566.1_g000008 Rmu_sc0005693.1_g000020 Rmu_sc0005992.1_g000007 Rmu_sc0006007.1_g000001 Rmu_sc0006016.1_g000017 Rmu_sc0006016.1_g000018 Rmu_sc0006147.1_g000009 Rmu_sc0006536.1_g000032 Rmu_sc0006536.1_g000033 Rmu_sc0006572.1_g000006 Rmu_sc0007474.1_g000013 Rmu_sc0007490.1_g000008 Rmu_sc0007490.1_g000009 Rmu_sc0007618.1_g000003 Rmu_sc0007753.1_g000021 Rmu_sc0008039.1_g000001 Rmu_sc0008044.1_g000008 Rmu_sc0008155.1_g000003 Rmu_sc0008308.1_g000006 Rmu_sc0008308.1_g000017 Rmu_sc0008360.1_g000006 Rmu_sc0008380.1_g000015 Rmu_sc0008596.1_g000002 Rmu_sc0008596.1_g000003 Rmu_sc0008629.1_g000013 Rmu_sc0008991.1_g000011 Rmu_sc0009015.1_g000004 Rmu_sc0009015.1_g000005 Rmu_sc0009360.1_g000050 Rmu_sc0009386.1_g000009 Rmu_sc0009410.1_g000003 Rmu_sc0009410.1_g000006 Rmu_sc0009609.1_g000001 Rmu_sc0010317.1_g000003 Rmu_sc0010871.1_g000016 Rmu_sc0010999.1_g000018 Rmu_sc0011019.1_g000009 Rmu_sc0011343.1_g000014 Rmu_sc0011578.1_g000019 Rmu_sc0011781.1_g000012 Rmu_sc0011921.1_g000008 Rmu_sc0012005.1_g000001 Rmu_sc0012179.1_g000006 Rmu_sc0012211.1_g000007 Rmu_sc0012220.1_g000002 Rmu_sc0012742.1_g000001 Rmu_sc0013620.1_g000004 Rmu_sc0014003.1_g000007 Rmu_sc0014203.1_g000024 Rmu_sc0014612.1_g000004 Rmu_sc0014667.1_g000006 Rmu_sc0015359.1_g000002 Rmu_sc0016526.1_g000003 Rmu_sc0017253.1_g000008 Rmu_sc0017394.1_g000005 Rmu_sc0017394.1_g000006 Rmu_sc0018840.1_g000001 Rmu_sc0019315.1_g000001 Rmu_sc0022276.1_g000002 Rmu_sc0024289.1_g000001 Rmu_sc0024918.1_g000004 Rmu_sc0026424.1_g000001 Rmu_sc0026425.1_g000001 Rmu_sc0030616.1_g000001 Rmu_sc0030617.1_g000001 Rmu_sc0031931.1_g000003 Rmu_sc0034665.1_g000001 Rmu_sc0035393.1_g000001 Rmu_ssc0000162.1_g000015 Rmu_ssc0000255.1_g000060 Rmu_ssc0000409.1_g000012
rosa_roxburghii Rroxscaffold_1G00006160 Rroxscaffold_2G00084140 Rroxscaffold_2G00109070 Rroxscaffold_2G00136190 Rroxscaffold_2G00136200 Rroxscaffold_3G00237880 Rroxscaffold_3G00250500 Rroxscaffold_3G00272860 Rroxscaffold_4G00283710 Rroxscaffold_4G00308190 Rroxscaffold_5G00334250 Rroxscaffold_5G00339840 Rroxscaffold_5G00380790 Rroxscaffold_7G00177140 Rroxscaffold_7G00186880 Rroxscaffold_7G00201080
rosa_rugosa Rorug01G0002600 Rorug01G0159800.1 Rorug01G0164900 Rorug01G0176500 Rorug01G0185400 Rorug01G0223500 Rorug01G0231900 Rorug01G0251700 Rorug01G0283600 Rorug01G0309600 Rorug01G0333600 Rorug01G0478500 Rorug01G0478700 Rorug01G0483600 Rorug02G0000400 Rorug02G0025400 Rorug02G0025500 Rorug02G0160600 Rorug02G0179800 Rorug02G0221000 Rorug02G0222000 Rorug02G0239900 Rorug02G0291000 Rorug02G0292800 Rorug02G0299400 Rorug02G0361300 Rorug02G0382000 Rorug02G0438400 Rorug02G0438400 Rorug02G0463000 Rorug02G0599300 Rorug03G0085500 Rorug03G0143300 Rorug03G0150200 Rorug03G0214500 Rorug03G0301800 Rorug03G0304100 Rorug03G0304200 Rorug03G0318900 Rorug03G0342400 Rorug03G0363300.1 Rorug04G0006400 Rorug04G0026200 Rorug04G0185500 Rorug04G0185600 Rorug04G0242600 Rorug04G0294300 Rorug04G0322000 Rorug04G0380900 Rorug05G0050300 Rorug05G0050300 Rorug05G0086800 Rorug05G0106900 Rorug05G0166700 Rorug05G0220300 Rorug05G0237400 Rorug05G0296300 Rorug05G0313400 Rorug05G0323000 Rorug05G0347200 Rorug05G0363800 Rorug05G0413500 Rorug05G0440900 Rorug05G0498500 Rorug05G0576300 Rorug06G0025600 Rorug06G0029800 Rorug06G0045700 Rorug06G0087400 Rorug06G0087600 Rorug06G0108200 Rorug06G0110200 Rorug06G0129900 Rorug06G0129900 Rorug06G0133800 Rorug06G0141200 Rorug06G0219200 Rorug06G0268900 Rorug06G0269000 Rorug06G0291100 Rorug06G0479100 Rorug06G0479200 Rorug06G0511800 Rorug07G0028800.1 Rorug07G0052500 Rorug07G0071900 Rorug07G0076600 Rorug07G0079900 Rorug07G0085200 Rorug07G0302400 Rorug07G0303700 Rorug07G0318000
rosa_samantha Rh1AG194500 Rh1AG194600 Rh1AG354700 Rh1BG147200 Rh1BG169000 Rh1BG212500 Rh1BG241800 Rh1CG179300 Rh2AG232000 Rh2BG307200 Rh2BG352400 Rh2BG563400 Rh2CG200100 Rh2CG285300 Rh2CG331100 Rh2CG533700 Rh2CG574800 Rh2CG650600 Rh2CG650700 Rh2DG212200 Rh3BG142200 Rh3BG294100 Rh3BG300500 Rh3CG143500 Rh3DG143400 Rh4AG079100 Rh4AG125800 Rh4BG119600 Rh4BG187000 Rh4BG248400 Rh4CG036500 Rh4CG084700 Rh4CG134000 Rh4CG198900 Rh5AG384400 Rh5BG212700 Rh5CG235900 Rh5CG292600 Rh5CG401000 Rh5CG502100 Rh5CG506700 Rh5DG020900 Rh5DG269500 Rh5DG330300 Rh5DG388800 Rh6AG031600 Rh6AG257800 Rh6AG375600 Rh6BG338400 Rh6BG418300 Rh6CG280900 Rh6DG411200 Rh7AG075900 Rh7BG073500 Rh7BG088700 Rh7BG210200 Rh7BG260400 Rh7BG269600 Rh7BG270600 Rh7BG459100 Rh7BG459200 Rh7CG258100
rosa_wichuraiana Rw0G014160 Rw0G019160 Rw1G007800 Rw1G013530 Rw1G036200 Rw2G016380 Rw2G022170 Rw2G036380 Rw3G001880 Rw4G026250 Rw5G017280 Rw5G045990 Rw6G019190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 2 cut(s) 158, 758
AccB7I CCANNNNNTGG 1 cut(s) 355
AccII CGCG 1 cut(s) 1932
AciI CCGC 7 cut(s) 118, 472, 517, 520, 740, 1930, 2066
AclWI GGATC 7 cut(s) 2, 15, 89, 222, 340, 374, 1023
AcoI YGGCCR 1 cut(s) 1250
AcsI RAATTY 1 cut(s) 2133
AcuI CTGAAG 2 cut(s) 66, 1322
AcvI CACGTG 1 cut(s) 1313
AcyI GRCGYC 1 cut(s) 1975
AfaI GTAC 2 cut(s) 760, 1693
AfeI AGCGCT 1 cut(s) 1874
AfiI CCNNNNNNNGG 9 cut(s) 28, 70, 268, 317, 355, 519, 666, 797, 1448
AflII CTTAAG 1 cut(s) 1583
AflIII ACRYGT 2 cut(s) 55, 1312
AgsI TTSAA 7 cut(s) 626, 937, 1355, 1412, 1428, 1682, 1797
AjiI CACGTC 1 cut(s) 1987
AjnI CCWGG 6 cut(s) 74, 128, 275, 512, 1519, 1847
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AloI GAACNNNNNNTCC 2 cut(s) 2061, 2093
AluBI AGCT 9 cut(s) 540, 845, 943, 1180, 1358, 1502, 1631, 1769, 2129
AluI AGCT 9 cut(s) 540, 845, 943, 1180, 1358, 1502, 1631, 1769, 2129
Alw21I GWGCWC 2 cut(s) 992, 1182
Alw26I GTCTC 2 cut(s) 839, 2016
AlwI GGATC 7 cut(s) 2, 15, 89, 222, 340, 374, 1023
Ama87I CYCGRG 1 cut(s) 2094
Aor51HI AGCGCT 1 cut(s) 1874
AoxI GGCC 7 cut(s) 72, 134, 190, 336, 462, 967, 1250
ApeKI GCWGC 6 cut(s) 121, 301, 554, 725, 923, 1726
ApoI RAATTY 1 cut(s) 2133
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
Asp700I GAANNNNTTC 1 cut(s) 1337
Asp718I GGTACC 1 cut(s) 758
AspA2I CCTAGG 2 cut(s) 734, 791
AspLEI GCGC 4 cut(s) 399, 1078, 1875, 2092
AspS9I GGNCC 6 cut(s) 272, 463, 968, 1260, 1297, 2006
AsuC2I CCSGG 1 cut(s) 1080
AsuHPI GGTGA 8 cut(s) 706, 782, 997, 1082, 1187, 1429, 1535, 1957
AsuNHI GCTAGC 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 2094
AvaII GGWCC 4 cut(s) 272, 1260, 1297, 2006
AvrII CCTAGG 2 cut(s) 734, 791
AxyI CCTNAGG 1 cut(s) 1293
BaeI ACNNNNGTAYC 4 cut(s) 750, 783, 2017, 2050
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 2 cut(s) 158, 758
BanII GRGCYC 2 cut(s) 1182, 1701
BauI CACGAG 1 cut(s) 764
BbrPI CACGTG 1 cut(s) 1313
BbsI GAAGAC 3 cut(s) 1184, 1310, 1689
Bbv12I GWGCWC 2 cut(s) 992, 1182
BbvI GCAGC 6 cut(s) 108, 288, 566, 712, 935, 1738
BceAI ACGGC 3 cut(s) 11, 831, 1265
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 6 cut(s) 76, 130, 277, 514, 1521, 1849
BciVI GTATCC 1 cut(s) 251
BclI TGATCA 3 cut(s) 454, 501, 2104
BcnI CCSGG 1 cut(s) 1080
BcoDI GTCTC 2 cut(s) 839, 2016
BfaI CTAG 8 cut(s) 305, 389, 735, 777, 792, 912, 1499, 2126
BfmI CTRYAG 3 cut(s) 552, 852, 1764
BfoI RGCGCY 2 cut(s) 1876, 2093
BfrI CTTAAG 1 cut(s) 1583
BfuAI ACCTGC 1 cut(s) 270
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 8 cut(s) 119, 122, 302, 518, 555, 726, 924, 1727
BlnI CCTAGG 2 cut(s) 734, 791
BlsI GCNGC 8 cut(s) 120, 123, 303, 519, 556, 727, 925, 1728
Bme1390I CCNGG 7 cut(s) 76, 130, 277, 514, 1080, 1521, 1849
Bme18I GGWCC 4 cut(s) 272, 1260, 1297, 2006
BmeT110I CYCGRG 1 cut(s) 2094
BmgBI CACGTC 1 cut(s) 1987
BmgT120I GGNCC 6 cut(s) 272, 463, 968, 1260, 1297, 2006
BmiI GGNNCC 6 cut(s) 9, 160, 273, 274, 760, 1261
BmrFI CCNGG 7 cut(s) 76, 130, 277, 514, 1080, 1521, 1849
BmsI GCATC 8 cut(s) 40, 288, 330, 874, 1063, 1366, 1645, 1780
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 3 cut(s) 1184, 1310, 1689
Bpu10I CCTNAGC 1 cut(s) 1359
BpuEI CTTGAG 4 cut(s) 1687, 1838, 1846, 2101
BpuMI CCSGG 1 cut(s) 1080
BsaAI YACGTR 1 cut(s) 1313
BsaBI GATNNNNATC 2 cut(s) 99, 365
BsaHI GRCGYC 1 cut(s) 1975
BsaJI CCNNGG 8 cut(s) 27, 64, 75, 275, 660, 734, 791, 2002
Bsc4I CCNNNNNNNGG 9 cut(s) 28, 70, 268, 317, 355, 519, 666, 797, 1448
Bse1I ACTGG 6 cut(s) 229, 465, 927, 1006, 1804, 1994
Bse21I CCTNAGG 1 cut(s) 1293
Bse3DI GCAATG 2 cut(s) 12, 708
Bse8I GATNNNNATC 2 cut(s) 99, 365
BseBI CCWGG 6 cut(s) 76, 130, 277, 514, 1521, 1849
BseDI CCNNGG 8 cut(s) 27, 64, 75, 275, 660, 734, 791, 2002
BseGI GGATG 6 cut(s) 628, 754, 976, 1171, 1176, 1784
BseJI GATNNNNATC 2 cut(s) 99, 365
BseLI CCNNNNNNNGG 9 cut(s) 28, 70, 268, 317, 355, 519, 666, 797, 1448
BseMI GCAATG 2 cut(s) 12, 708
BseMII CTCAG 5 cut(s) 1211, 1241, 1403, 1434, 1686
BseNI ACTGG 6 cut(s) 229, 465, 927, 1006, 1804, 1994
BseRI GAGGAG 6 cut(s) 678, 1215, 1541, 1724, 1904, 2010
BseXI GCAGC 6 cut(s) 108, 288, 566, 712, 935, 1738
BseYI CCCAGC 2 cut(s) 845, 1627
Bsh1236I CGCG 1 cut(s) 1932
BshFI GGCC 7 cut(s) 74, 136, 192, 338, 464, 969, 1252
BshNI GGYRCC 2 cut(s) 158, 758
BsiHKAI GWGCWC 2 cut(s) 992, 1182
BsiHKCI CYCGRG 1 cut(s) 2094
BsiSI CCGG 4 cut(s) 137, 1079, 1972, 2063
BslFI GGGAC 7 cut(s) 258, 1097, 1384, 1606, 1737, 1766, 1795
BslI CCNNNNNNNGG 9 cut(s) 28, 70, 268, 317, 355, 519, 666, 797, 1448
BsmAI GTCTC 2 cut(s) 839, 2016
BsmBI CGTCTC 1 cut(s) 2016
BsmFI GGGAC 7 cut(s) 258, 1097, 1384, 1606, 1737, 1766, 1795
BsmI GAATGC 2 cut(s) 703, 887
BsnI GGCC 7 cut(s) 74, 136, 192, 338, 464, 969, 1252
BsoBI CYCGRG 1 cut(s) 2094
Bsp1286I GDGCHC 3 cut(s) 992, 1182, 1701
BspACI CCGC 7 cut(s) 118, 472, 517, 520, 740, 1930, 2066
BspANI GGCC 7 cut(s) 74, 136, 192, 338, 464, 969, 1252
BspCNI CTCAG 5 cut(s) 1210, 1240, 1402, 1435, 1687
BspFNI CGCG 1 cut(s) 1932
BspLI GGNNCC 6 cut(s) 9, 160, 273, 274, 760, 1261
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 7 cut(s) 2, 15, 89, 222, 340, 374, 1023
BspQI GCTCTTC 1 cut(s) 1470
BspT107I GGYRCC 2 cut(s) 158, 758
BspTI CTTAAG 1 cut(s) 1583
BsrDI GCAATG 2 cut(s) 12, 708
BsrI ACTGG 6 cut(s) 229, 465, 927, 1006, 1804, 1994
BssECI CCNNGG 8 cut(s) 27, 64, 75, 275, 660, 734, 791, 2002
BssNI GRCGYC 1 cut(s) 1975
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 5 cut(s) 64, 660, 734, 791, 2002
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 6 cut(s) 76, 130, 277, 514, 1521, 1849
Bst4CI ACNGT 9 cut(s) 287, 312, 573, 650, 833, 994, 1289, 1545, 2010
Bst6I CTCTTC 6 cut(s) 75, 1407, 1470, 1662, 1928, 2019
BstACI GRCGYC 1 cut(s) 1975
BstAFI CTTAAG 1 cut(s) 1583
BstBAI YACGTR 1 cut(s) 1313
BstC8I GCNNGC 6 cut(s) 19, 306, 681, 1033, 1143, 1724
BstDEI CTNAG 8 cut(s) 1010, 1197, 1227, 1293, 1359, 1389, 1443, 1695
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 6 cut(s) 628, 754, 976, 1171, 1176, 1784
BstFNI CGCG 1 cut(s) 1932
BstH2I RGCGCY 2 cut(s) 1876, 2093
BstHHI GCGC 4 cut(s) 399, 1078, 1875, 2092
BstMAI GTCTC 2 cut(s) 839, 2016
BstMWI GCNNNNNNNGC 5 cut(s) 23, 680, 1151, 1775, 1841
BstNI CCWGG 6 cut(s) 76, 130, 277, 514, 1521, 1849
BstSCI CCNGG 7 cut(s) 74, 128, 275, 512, 1078, 1519, 1847
BstSFI CTRYAG 3 cut(s) 552, 852, 1764
BstUI CGCG 1 cut(s) 1932
BstV1I GCAGC 6 cut(s) 108, 288, 566, 712, 935, 1738
BstV2I GAAGAC 3 cut(s) 1184, 1310, 1689
BstX2I RGATCY 2 cut(s) 7, 94
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 2 cut(s) 7, 94
Bsu36I CCTNAGG 1 cut(s) 1293
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 7 cut(s) 74, 136, 192, 338, 464, 969, 1252
BtgI CCRYGG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 1987
BtsCI GGATG 6 cut(s) 628, 754, 976, 1171, 1176, 1784
BtsIMutI CAGTG 5 cut(s) 633, 990, 1093, 2044, 2100
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 6 cut(s) 19, 306, 681, 1033, 1143, 1724
CfoI GCGC 4 cut(s) 399, 1078, 1875, 2092
Cfr13I GGNCC 6 cut(s) 272, 463, 968, 1260, 1297, 2006
CseI GACGC 2 cut(s) 1833, 1964
Csp6I GTAC 2 cut(s) 759, 1692
CviAII CATG 5 cut(s) 109, 163, 203, 266, 959
CviQI GTAC 2 cut(s) 759, 1692
DdeI CTNAG 8 cut(s) 1010, 1197, 1227, 1293, 1359, 1389, 1443, 1695
EaeI YGGCCR 1 cut(s) 1250
Eam1104I CTCTTC 6 cut(s) 75, 1407, 1470, 1662, 1928, 2019
EarI CTCTTC 6 cut(s) 75, 1407, 1470, 1662, 1928, 2019
Ecl136II GAGCTC 1 cut(s) 1180
Eco130I CCWWGG 5 cut(s) 64, 660, 734, 791, 2002
Eco24I GRGCYC 2 cut(s) 1182, 1701
Eco47I GGWCC 4 cut(s) 272, 1260, 1297, 2006
Eco47III AGCGCT 1 cut(s) 1874
Eco53kI GAGCTC 1 cut(s) 1180
Eco57I CTGAAG 2 cut(s) 66, 1322
Eco72I CACGTG 1 cut(s) 1313
Eco81I CCTNAGG 1 cut(s) 1293
Eco88I CYCGRG 1 cut(s) 2094
EcoICRI GAGCTC 1 cut(s) 1180
EcoO109I RGGNCCY 2 cut(s) 272, 1297
EcoRII CCWGG 6 cut(s) 74, 128, 275, 512, 1519, 1847
EcoT14I CCWWGG 5 cut(s) 64, 660, 734, 791, 2002
EcoT22I ATGCAT 2 cut(s) 168, 889
EcoT38I GRGCYC 2 cut(s) 1182, 1701
ErhI CCWWGG 5 cut(s) 64, 660, 734, 791, 2002
Esp3I CGTCTC 1 cut(s) 2016
FaeI CATG 5 cut(s) 112, 166, 206, 269, 962
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 7 cut(s) 258, 1097, 1384, 1606, 1737, 1766, 1795
FatI CATG 5 cut(s) 108, 162, 202, 265, 958
FauI CCCGC 2 cut(s) 1937, 2059
FbaI TGATCA 3 cut(s) 454, 501, 2104
Fnu4HI GCNGC 8 cut(s) 119, 122, 302, 518, 555, 726, 924, 1727
FokI GGATG 6 cut(s) 615, 761, 963, 1178, 1183, 1771
FriOI GRGCYC 2 cut(s) 1182, 1701
Fsp4HI GCNGC 8 cut(s) 119, 122, 302, 518, 555, 726, 924, 1727
FspBI CTAG 8 cut(s) 305, 389, 735, 777, 792, 912, 1499, 2126
FspI TGCGCA 1 cut(s) 398
GlaI GCGC 4 cut(s) 398, 1077, 1874, 2091
GluI GCNGC 8 cut(s) 119, 122, 302, 518, 555, 726, 924, 1727
GsaI CCCAGC 2 cut(s) 849, 1631
HaeII RGCGCY 2 cut(s) 1876, 2093
HaeIII GGCC 7 cut(s) 74, 136, 192, 338, 464, 969, 1252
HapII CCGG 4 cut(s) 137, 1079, 1972, 2063
HgaI GACGC 2 cut(s) 1833, 1964
HhaI GCGC 4 cut(s) 399, 1078, 1875, 2092
Hin1I GRCGYC 1 cut(s) 1975
Hin1II CATG 5 cut(s) 112, 166, 206, 269, 962
Hin6I GCGC 4 cut(s) 397, 1076, 1873, 2090
HinP1I GCGC 4 cut(s) 397, 1076, 1873, 2090
HincII GTYRAC 3 cut(s) 61, 247, 1285
HindII GTYRAC 3 cut(s) 61, 247, 1285
HindIII AAGCTT 2 cut(s) 538, 941
HinfI GANTC 6 cut(s) 752, 1510, 1516, 1808, 1990, 2097
HpaII CCGG 4 cut(s) 137, 1079, 1972, 2063
HphI GGTGA 8 cut(s) 706, 782, 997, 1082, 1187, 1429, 1535, 1957
Hpy166II GTNNAC 3 cut(s) 61, 247, 1285
Hpy8I GTNNAC 3 cut(s) 61, 247, 1285
Hpy99I CGWCG 1 cut(s) 1545
HpyAV CCTTC 6 cut(s) 432, 1312, 1395, 1823, 1978, 2142
HpyCH4III ACNGT 9 cut(s) 287, 312, 573, 650, 833, 994, 1289, 1545, 2010
HpyCH4IV ACGT 5 cut(s) 57, 1312, 1690, 1986, 2141
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 680, 1151, 1775, 1841
HpyF3I CTNAG 8 cut(s) 1010, 1197, 1227, 1293, 1359, 1389, 1443, 1695
HpySE526I ACGT 5 cut(s) 57, 1312, 1690, 1986, 2141
Hsp92I GRCGYC 1 cut(s) 1975
Hsp92II CATG 5 cut(s) 112, 166, 206, 269, 962
HspAI GCGC 4 cut(s) 397, 1076, 1873, 2090
KflI GGGWCCC 1 cut(s) 272
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 3 cut(s) 454, 501, 2104
LguI GCTCTTC 1 cut(s) 1470
LmnI GCTCC 2 cut(s) 1393, 2087
Lsp1109I GCAGC 6 cut(s) 108, 288, 566, 712, 935, 1738
LweI GCATC 8 cut(s) 40, 288, 330, 874, 1063, 1366, 1645, 1780
MaeI CTAG 8 cut(s) 305, 389, 735, 777, 792, 912, 1499, 2126
MaeII ACGT 5 cut(s) 57, 1312, 1690, 1986, 2141
MaeIII GTNAC 3 cut(s) 644, 827, 2098
MflI RGATCY 2 cut(s) 7, 94
MhlI GDGCHC 3 cut(s) 992, 1182, 1701
MluCI AATT 6 cut(s) 372, 907, 949, 1677, 2072, 2133
MlyI GAGTC 3 cut(s) 1519, 1817, 2106
MmeI TCCRAC 1 cut(s) 1913
Mph1103I ATGCAT 2 cut(s) 168, 889
MroXI GAANNNNTTC 1 cut(s) 1337
MseI TTAA 4 cut(s) 375, 948, 1323, 1584
MspA1I CMGCKG 1 cut(s) 845
MspCI CTTAAG 1 cut(s) 1583
MspI CCGG 4 cut(s) 137, 1079, 1972, 2063
MspR9I CCNGG 7 cut(s) 76, 130, 277, 514, 1080, 1521, 1849
Mva1269I GAATGC 2 cut(s) 703, 887
MvaI CCWGG 6 cut(s) 76, 130, 277, 514, 1521, 1849
MvnI CGCG 1 cut(s) 1932
MwoI GCNNNNNNNGC 5 cut(s) 23, 680, 1151, 1775, 1841
NciI CCSGG 1 cut(s) 1080
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 5 cut(s) 112, 166, 206, 269, 962
NlaIV GGNNCC 6 cut(s) 9, 160, 273, 274, 760, 1261
NmeAIII GCCGAG 1 cut(s) 1861
NmuCI GTSAC 2 cut(s) 644, 2098
NsbI TGCGCA 1 cut(s) 398
NsiI ATGCAT 2 cut(s) 168, 889
PaeR7I CTCGAG 1 cut(s) 2094
PciSI GCTCTTC 1 cut(s) 1470
PcsI WCGNNNNNNNCGW 1 cut(s) 1752
PctI GAATGC 2 cut(s) 703, 887
PdmI GAANNNNTTC 1 cut(s) 1337
PfeI GAWTC 3 cut(s) 752, 1516, 1990
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 8 cut(s) 120, 123, 303, 519, 556, 727, 925, 1728
PleI GAGTC 3 cut(s) 1518, 1816, 2105
PmaCI CACGTG 1 cut(s) 1313
PmlI CACGTG 1 cut(s) 1313
PpsI GAGTC 3 cut(s) 1518, 1816, 2105
Ppu21I YACGTR 1 cut(s) 1313
PpuMI RGGWCCY 2 cut(s) 272, 1297
Psp124BI GAGCTC 1 cut(s) 1182
Psp5II RGGWCCY 2 cut(s) 272, 1297
Psp6I CCWGG 6 cut(s) 74, 128, 275, 512, 1519, 1847
PspCI CACGTG 1 cut(s) 1313
PspFI CCCAGC 2 cut(s) 845, 1627
PspGI CCWGG 6 cut(s) 74, 128, 275, 512, 1519, 1847
PspN4I GGNNCC 6 cut(s) 9, 160, 273, 274, 760, 1261
PspPI GGNCC 6 cut(s) 272, 463, 968, 1260, 1297, 2006
PspPPI RGGWCCY 2 cut(s) 272, 1297
PspXI VCTCGAGB 1 cut(s) 2094
PstI CTGCAG 1 cut(s) 556
PsuI RGATCY 2 cut(s) 7, 94
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 2 cut(s) 760, 1693
RsaNI GTAC 2 cut(s) 759, 1692
SacI GAGCTC 1 cut(s) 1182
SapI GCTCTTC 1 cut(s) 1470
SaqAI TTAA 4 cut(s) 375, 948, 1323, 1584
SatI GCNGC 8 cut(s) 119, 122, 302, 518, 555, 726, 924, 1727
Sau96I GGNCC 6 cut(s) 272, 463, 968, 1260, 1297, 2006
SchI GAGTC 3 cut(s) 1519, 1817, 2106
ScrFI CCNGG 7 cut(s) 76, 130, 277, 514, 1080, 1521, 1849
SduI GDGCHC 3 cut(s) 992, 1182, 1701
SfaNI GCATC 8 cut(s) 40, 288, 330, 874, 1063, 1366, 1645, 1780
SfcI CTRYAG 3 cut(s) 552, 852, 1764
Sfr274I CTCGAG 1 cut(s) 2094
SinI GGWCC 4 cut(s) 272, 1260, 1297, 2006
SlaI CTCGAG 1 cut(s) 2094
SmlI CTYRAG 6 cut(s) 1583, 1702, 1825, 1853, 2094, 2116
SmoI CTYRAG 6 cut(s) 1583, 1702, 1825, 1853, 2094, 2116
Sse9I AATT 6 cut(s) 372, 907, 949, 1677, 2072, 2133
SsiI CCGC 7 cut(s) 118, 472, 517, 520, 740, 1930, 2066
SspMI CTAG 8 cut(s) 305, 389, 735, 777, 792, 912, 1499, 2126
SstI GAGCTC 1 cut(s) 1182
StyD4I CCNGG 7 cut(s) 74, 128, 275, 512, 1078, 1519, 1847
StyI CCWWGG 5 cut(s) 64, 660, 734, 791, 2002
TaaI ACNGT 9 cut(s) 287, 312, 573, 650, 833, 994, 1289, 1545, 2010
TaiI ACGT 5 cut(s) 60, 1315, 1693, 1989, 2144
TaqI TCGA 6 cut(s) 416, 575, 595, 1536, 1650, 2095
TasI AATT 6 cut(s) 372, 907, 949, 1677, 2072, 2133
TauI GCSGC 2 cut(s) 121, 520
TfiI GAWTC 3 cut(s) 752, 1516, 1990
Tru1I TTAA 4 cut(s) 375, 948, 1323, 1584
Tru9I TTAA 4 cut(s) 375, 948, 1323, 1584
TscAI CASTG 5 cut(s) 640, 997, 1093, 2044, 2107
TseFI GTSAC 2 cut(s) 644, 2098
TseI GCWGC 6 cut(s) 121, 301, 554, 725, 923, 1726
Tsp45I GTSAC 2 cut(s) 644, 2098
TspDTI ATGAA 4 cut(s) 495, 765, 1012, 1610
TspGWI ACGGA 2 cut(s) 1701, 1868
TspRI CASTG 5 cut(s) 640, 997, 1093, 2044, 2107
Van91I CCANNNNNTGG 1 cut(s) 355
Vha464I CTTAAG 1 cut(s) 1583
VpaK11BI GGWCC 4 cut(s) 272, 1260, 1297, 2006
XapI RAATTY 1 cut(s) 2133
XbaI TCTAGA 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 2094
XmaJI CCTAGG 2 cut(s) 734, 791
XmnI GAANNNNTTC 1 cut(s) 1337
XspI CTAG 8 cut(s) 305, 389, 735, 777, 792, 912, 1499, 2126
Zsp2I ATGCAT 2 cut(s) 168, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.