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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| Acc65I | GGTACC | 1 cut(s) | 409 |
| AccB1I | GGYRCC | 2 cut(s) | 229, 409 |
| AclWI | GGATC | 1 cut(s) | 37 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AfaI | GTAC | 3 cut(s) | 63, 169, 411 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 1 cut(s) | 304 |
| AluBI | AGCT | 1 cut(s) | 355 |
| AluI | AGCT | 1 cut(s) | 355 |
| Alw26I | GTCTC | 1 cut(s) | 359 |
| AlwI | GGATC | 1 cut(s) | 37 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 318 |
| Asp718I | GGTACC | 1 cut(s) | 409 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 2 cut(s) | 52, 415 |
| AsuII | TTCGAA | 2 cut(s) | 236, 332 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BanI | GGYRCC | 2 cut(s) | 229, 409 |
| BanII | GRGCYC | 1 cut(s) | 139 |
| BbvI | GCAGC | 1 cut(s) | 356 |
| BccI | CCATC | 3 cut(s) | 28, 394, 400 |
| BcoDI | GTCTC | 1 cut(s) | 359 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BisI | GCNGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 1 cut(s) | 346 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmiI | GGNNCC | 3 cut(s) | 136, 231, 411 |
| BmrI | ACTGGG | 1 cut(s) | 226 |
| BmuI | ACTGGG | 1 cut(s) | 226 |
| Bpu14I | TTCGAA | 2 cut(s) | 236, 332 |
| BsaJI | CCNNGG | 1 cut(s) | 225 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 416 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse1I | ACTGG | 2 cut(s) | 169, 221 |
| BseDI | CCNNGG | 1 cut(s) | 225 |
| BseGI | GGATG | 3 cut(s) | 22, 394, 405 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseNI | ACTGG | 2 cut(s) | 169, 221 |
| BseRI | GAGGAG | 1 cut(s) | 26 |
| BseXI | GCAGC | 1 cut(s) | 356 |
| BseYI | CCCAGC | 1 cut(s) | 395 |
| BsgI | GTGCAG | 1 cut(s) | 101 |
| BshNI | GGYRCC | 2 cut(s) | 229, 409 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmAI | GTCTC | 1 cut(s) | 359 |
| Bsp119I | TTCGAA | 2 cut(s) | 236, 332 |
| Bsp1286I | GDGCHC | 1 cut(s) | 139 |
| Bsp143I | GATC | 1 cut(s) | 42 |
| Bsp19I | CCATGG | 1 cut(s) | 225 |
| BspCNI | CTCAG | 1 cut(s) | 163 |
| BspLI | GGNNCC | 3 cut(s) | 136, 231, 411 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 1 cut(s) | 37 |
| BspT104I | TTCGAA | 2 cut(s) | 236, 332 |
| BspT107I | GGYRCC | 2 cut(s) | 229, 409 |
| BsrI | ACTGG | 2 cut(s) | 169, 221 |
| BssECI | CCNNGG | 1 cut(s) | 225 |
| BssMI | GATC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 3 cut(s) | 79, 318, 370 |
| BstBI | TTCGAA | 2 cut(s) | 236, 332 |
| BstDEI | CTNAG | 1 cut(s) | 171 |
| BstDSI | CCRYGG | 1 cut(s) | 225 |
| BstF5I | GGATG | 3 cut(s) | 22, 394, 405 |
| BstKTI | GATC | 1 cut(s) | 45 |
| BstMAI | GTCTC | 1 cut(s) | 359 |
| BstMBI | GATC | 1 cut(s) | 42 |
| BstV1I | GCAGC | 1 cut(s) | 356 |
| BtgI | CCRYGG | 1 cut(s) | 225 |
| BtsCI | GGATG | 3 cut(s) | 22, 394, 405 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| CseI | GACGC | 1 cut(s) | 105 |
| Csp6I | GTAC | 3 cut(s) | 62, 168, 410 |
| CviAII | CATG | 4 cut(s) | 95, 113, 152, 226 |
| CviJI | RGCY | 4 cut(s) | 137, 347, 355, 395 |
| CviKI_1 | RGCY | 4 cut(s) | 137, 347, 355, 395 |
| CviQI | GTAC | 3 cut(s) | 62, 168, 410 |
| DdeI | CTNAG | 1 cut(s) | 171 |
| DpnI | GATC | 1 cut(s) | 44 |
| DpnII | GATC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 225 |
| Eco24I | GRGCYC | 1 cut(s) | 139 |
| Eco32I | GATATC | 1 cut(s) | 268 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 178 |
| EcoRV | GATATC | 1 cut(s) | 268 |
| EcoT14I | CCWWGG | 1 cut(s) | 225 |
| EcoT22I | ATGCAT | 1 cut(s) | 153 |
| EcoT38I | GRGCYC | 1 cut(s) | 139 |
| ErhI | CCWWGG | 1 cut(s) | 225 |
| FaeI | CATG | 4 cut(s) | 98, 116, 155, 229 |
| FaiI | YATR | 6 cut(s) | 96, 114, 126, 153, 227, 292 |
| FatI | CATG | 4 cut(s) | 94, 112, 151, 225 |
| Fnu4HI | GCNGC | 1 cut(s) | 345 |
| FokI | GGATG | 3 cut(s) | 29, 401, 412 |
| FriOI | GRGCYC | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 1 cut(s) | 345 |
| GluI | GCNGC | 1 cut(s) | 345 |
| GsaI | CCCAGC | 1 cut(s) | 399 |
| HgaI | GACGC | 1 cut(s) | 105 |
| Hin1II | CATG | 4 cut(s) | 98, 116, 155, 229 |
| HinfI | GANTC | 1 cut(s) | 221 |
| HphI | GGTGA | 2 cut(s) | 52, 415 |
| Hpy188I | TCNGA | 3 cut(s) | 297, 313, 418 |
| Hpy188III | TCNNGA | 1 cut(s) | 271 |
| HpyAV | CCTTC | 3 cut(s) | 243, 268, 298 |
| HpyCH4III | ACNGT | 3 cut(s) | 79, 318, 370 |
| HpyCH4IV | ACGT | 1 cut(s) | 384 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 82, 94, 151 |
| HpyF3I | CTNAG | 1 cut(s) | 171 |
| HpySE526I | ACGT | 1 cut(s) | 384 |
| Hsp92II | CATG | 4 cut(s) | 98, 116, 155, 229 |
| KpnI | GGTACC | 1 cut(s) | 413 |
| Kzo9I | GATC | 1 cut(s) | 42 |
| LmnI | GCTCC | 1 cut(s) | 134 |
| LpnPI | CCDG | 8 cut(s) | 38, 50, 60, 150, 161, 199, 202, 381 |
| Lsp1109I | GCAGC | 1 cut(s) | 356 |
| MaeII | ACGT | 1 cut(s) | 384 |
| MaeIII | GTNAC | 3 cut(s) | 70, 117, 380 |
| MalI | GATC | 1 cut(s) | 44 |
| MboI | GATC | 1 cut(s) | 42 |
| MhlI | GDGCHC | 1 cut(s) | 139 |
| MluCI | AATT | 3 cut(s) | 202, 251, 287 |
| MnlI | CCTC | 6 cut(s) | 4, 7, 276, 385, 418, 424 |
| Mph1103I | ATGCAT | 1 cut(s) | 153 |
| MroXI | GAANNNNTTC | 1 cut(s) | 318 |
| MseI | TTAA | 2 cut(s) | 146, 436 |
| NcoI | CCATGG | 1 cut(s) | 225 |
| NdeII | GATC | 1 cut(s) | 42 |
| NlaIII | CATG | 4 cut(s) | 98, 116, 155, 229 |
| NlaIV | GGNNCC | 3 cut(s) | 136, 231, 411 |
| NmuCI | GTSAC | 1 cut(s) | 117 |
| NsiI | ATGCAT | 1 cut(s) | 153 |
| NspV | TTCGAA | 2 cut(s) | 236, 332 |
| PdmI | GAANNNNTTC | 1 cut(s) | 318 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 1 cut(s) | 346 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| PspFI | CCCAGC | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 3 cut(s) | 136, 231, 411 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| RsaI | GTAC | 3 cut(s) | 63, 169, 411 |
| RsaNI | GTAC | 3 cut(s) | 62, 168, 410 |
| SaqAI | TTAA | 2 cut(s) | 146, 436 |
| SatI | GCNGC | 1 cut(s) | 345 |
| Sau3AI | GATC | 1 cut(s) | 42 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| SduI | GDGCHC | 1 cut(s) | 139 |
| SetI | ASST | 7 cut(s) | 57, 180, 250, 279, 309, 357, 387 |
| SfuI | TTCGAA | 2 cut(s) | 236, 332 |
| SinI | GGWCC | 1 cut(s) | 178 |
| Sse9I | AATT | 3 cut(s) | 202, 251, 287 |
| StyI | CCWWGG | 1 cut(s) | 225 |
| TaaI | ACNGT | 3 cut(s) | 79, 318, 370 |
| TaiI | ACGT | 1 cut(s) | 387 |
| TaqI | TCGA | 2 cut(s) | 236, 332 |
| TasI | AATT | 3 cut(s) | 202, 251, 287 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 2 cut(s) | 146, 436 |
| Tru9I | TTAA | 2 cut(s) | 146, 436 |
| TseFI | GTSAC | 1 cut(s) | 117 |
| TseI | GCWGC | 1 cut(s) | 344 |
| Tsp45I | GTSAC | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XmnI | GAANNNNTTC | 1 cut(s) | 318 |
| Zsp2I | ATGCAT | 1 cut(s) | 153 |