Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 75 |
| AccB1I | GGYRCC | 1 cut(s) | 161 |
| AciI | CCGC | 3 cut(s) | 105, 142, 273 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 111 |
| AcyI | GRCGYC | 1 cut(s) | 181 |
| AfaI | GTAC | 1 cut(s) | 19 |
| AfeI | AGCGCT | 1 cut(s) | 264 |
| AgsI | TTSAA | 2 cut(s) | 35, 157 |
| AjnI | CCWGG | 2 cut(s) | 148, 365 |
| AluBI | AGCT | 1 cut(s) | 248 |
| AluI | AGCT | 1 cut(s) | 248 |
| Alw26I | GTCTC | 3 cut(s) | 188, 200, 356 |
| AlwI | GGATC | 1 cut(s) | 140 |
| Aor51HI | AGCGCT | 1 cut(s) | 264 |
| AoxI | GGCC | 1 cut(s) | 275 |
| ApeKI | GCWGC | 2 cut(s) | 52, 265 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AspLEI | GCGC | 1 cut(s) | 265 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 1 cut(s) | 164 |
| BanI | GGYRCC | 1 cut(s) | 161 |
| BbvI | GCAGC | 2 cut(s) | 64, 252 |
| BccI | CCATC | 2 cut(s) | 314, 352 |
| BceAI | ACGGC | 1 cut(s) | 262 |
| BciT130I | CCWGG | 2 cut(s) | 150, 367 |
| BcoDI | GTCTC | 3 cut(s) | 188, 200, 356 |
| BfaI | CTAG | 1 cut(s) | 379 |
| BfmI | CTRYAG | 2 cut(s) | 94, 286 |
| BfoI | RGCGCY | 1 cut(s) | 266 |
| BisI | GCNGC | 2 cut(s) | 53, 266 |
| BlsI | GCNGC | 2 cut(s) | 54, 267 |
| Bme1390I | CCNGG | 2 cut(s) | 150, 367 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 2 cut(s) | 163, 345 |
| BmrFI | CCNGG | 2 cut(s) | 150, 367 |
| BmsI | GCATC | 3 cut(s) | 15, 199, 288 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| Bsa29I | ATCGAT | 1 cut(s) | 220 |
| BsaHI | GRCGYC | 1 cut(s) | 181 |
| BsaI | GGTCTC | 2 cut(s) | 200, 356 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 149, 278 |
| BsaWI | WCCGGW | 1 cut(s) | 191 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 31 |
| Bse3DI | GCAATG | 1 cut(s) | 165 |
| BseBI | CCWGG | 2 cut(s) | 150, 367 |
| BseCI | ATCGAT | 1 cut(s) | 220 |
| BseDI | CCNNGG | 3 cut(s) | 45, 149, 278 |
| BseGI | GGATG | 1 cut(s) | 30 |
| BseMI | GCAATG | 1 cut(s) | 165 |
| BseMII | CTCAG | 2 cut(s) | 48, 345 |
| BseSI | GKGCMC | 1 cut(s) | 164 |
| BseXI | GCAGC | 2 cut(s) | 64, 252 |
| BsgI | GTGCAG | 1 cut(s) | 71 |
| BshFI | GGCC | 1 cut(s) | 277 |
| BshNI | GGYRCC | 1 cut(s) | 161 |
| BshVI | ATCGAT | 1 cut(s) | 220 |
| BsiSI | CCGG | 2 cut(s) | 192, 213 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BsmAI | GTCTC | 3 cut(s) | 188, 200, 356 |
| BsmBI | CGTCTC | 1 cut(s) | 188 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 277 |
| Bso31I | GGTCTC | 2 cut(s) | 200, 356 |
| Bsp1286I | GDGCHC | 1 cut(s) | 164 |
| Bsp143I | GATC | 3 cut(s) | 132, 174, 217 |
| BspACI | CCGC | 3 cut(s) | 105, 142, 273 |
| BspANI | GGCC | 1 cut(s) | 277 |
| BspCNI | CTCAG | 2 cut(s) | 49, 344 |
| BspDI | ATCGAT | 1 cut(s) | 220 |
| BspHI | TCATGA | 2 cut(s) | 205, 241 |
| BspLI | GGNNCC | 2 cut(s) | 163, 345 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspT107I | GGYRCC | 1 cut(s) | 161 |
| BspTNI | GGTCTC | 2 cut(s) | 200, 356 |
| BsrDI | GCAATG | 1 cut(s) | 165 |
| BssECI | CCNNGG | 3 cut(s) | 45, 149, 278 |
| BssMI | GATC | 3 cut(s) | 132, 174, 217 |
| BssNI | GRCGYC | 1 cut(s) | 181 |
| Bst2UI | CCWGG | 2 cut(s) | 150, 367 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| BstACI | GRCGYC | 1 cut(s) | 181 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 2 cut(s) | 57, 331 |
| BstDSI | CCRYGG | 2 cut(s) | 45, 278 |
| BstF5I | GGATG | 1 cut(s) | 30 |
| BstH2I | RGCGCY | 1 cut(s) | 266 |
| BstHHI | GCGC | 1 cut(s) | 265 |
| BstKTI | GATC | 3 cut(s) | 135, 177, 220 |
| BstMAI | GTCTC | 3 cut(s) | 188, 200, 356 |
| BstMBI | GATC | 3 cut(s) | 132, 174, 217 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 274 |
| BstNI | CCWGG | 2 cut(s) | 150, 367 |
| BstSCI | CCNGG | 2 cut(s) | 148, 365 |
| BstSFI | CTRYAG | 2 cut(s) | 94, 286 |
| BstSLI | GKGCMC | 1 cut(s) | 164 |
| BstV1I | GCAGC | 2 cut(s) | 64, 252 |
| Bsu15I | ATCGAT | 1 cut(s) | 220 |
| BsuRI | GGCC | 1 cut(s) | 277 |
| BsuTUI | ATCGAT | 1 cut(s) | 220 |
| BtgI | CCRYGG | 2 cut(s) | 45, 278 |
| BtsCI | GGATG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| CciI | TCATGA | 2 cut(s) | 205, 241 |
| CfoI | GCGC | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| ClaI | ATCGAT | 1 cut(s) | 220 |
| CseI | GACGC | 1 cut(s) | 170 |
| Csp6I | GTAC | 1 cut(s) | 18 |
| CviAII | CATG | 3 cut(s) | 206, 242, 269 |
| CviJI | RGCY | 5 cut(s) | 55, 125, 248, 277, 330 |
| CviKI_1 | RGCY | 5 cut(s) | 55, 125, 248, 277, 330 |
| CviQI | GTAC | 1 cut(s) | 18 |
| DdeI | CTNAG | 2 cut(s) | 57, 331 |
| DpnI | GATC | 3 cut(s) | 134, 176, 219 |
| DpnII | GATC | 3 cut(s) | 132, 174, 217 |
| Eco31I | GGTCTC | 2 cut(s) | 200, 356 |
| Eco47III | AGCGCT | 1 cut(s) | 264 |
| Eco57I | CTGAAG | 1 cut(s) | 111 |
| EcoRI | GAATTC | 1 cut(s) | 35 |
| EcoRII | CCWGG | 2 cut(s) | 148, 365 |
| Esp3I | CGTCTC | 1 cut(s) | 188 |
| FaeI | CATG | 3 cut(s) | 209, 245, 272 |
| FaiI | YATR | 6 cut(s) | 75, 120, 207, 243, 270, 318 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 3 cut(s) | 205, 241, 268 |
| FauI | CCCGC | 1 cut(s) | 266 |
| Fnu4HI | GCNGC | 2 cut(s) | 53, 266 |
| FokI | GGATG | 1 cut(s) | 37 |
| Fsp4HI | GCNGC | 2 cut(s) | 53, 266 |
| FspBI | CTAG | 1 cut(s) | 379 |
| GlaI | GCGC | 1 cut(s) | 264 |
| GluI | GCNGC | 2 cut(s) | 53, 266 |
| HaeII | RGCGCY | 1 cut(s) | 266 |
| HaeIII | GGCC | 1 cut(s) | 277 |
| HapII | CCGG | 2 cut(s) | 192, 213 |
| HgaI | GACGC | 1 cut(s) | 170 |
| HhaI | GCGC | 1 cut(s) | 265 |
| Hin1I | GRCGYC | 1 cut(s) | 181 |
| Hin1II | CATG | 3 cut(s) | 209, 245, 272 |
| Hin6I | GCGC | 1 cut(s) | 263 |
| HinP1I | GCGC | 1 cut(s) | 263 |
| HindIII | AAGCTT | 1 cut(s) | 246 |
| HinfI | GANTC | 3 cut(s) | 90, 222, 338 |
| HpaII | CCGG | 2 cut(s) | 192, 213 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 242 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 52, 268 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 274 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 331 |
| Hsp92I | GRCGYC | 1 cut(s) | 181 |
| Hsp92II | CATG | 3 cut(s) | 209, 245, 272 |
| HspAI | GCGC | 1 cut(s) | 263 |
| Kzo9I | GATC | 3 cut(s) | 132, 174, 217 |
| LpnPI | CCDG | 9 cut(s) | 69, 114, 135, 162, 163, 205, 226, 274, 352 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 252 |
| LweI | GCATC | 3 cut(s) | 15, 199, 288 |
| MaeI | CTAG | 1 cut(s) | 379 |
| MalI | GATC | 3 cut(s) | 134, 176, 219 |
| MboI | GATC | 3 cut(s) | 132, 174, 217 |
| MboII | GAAGA | 1 cut(s) | 367 |
| MhlI | GDGCHC | 1 cut(s) | 164 |
| MluCI | AATT | 2 cut(s) | 35, 233 |
| MlyI | GAGTC | 1 cut(s) | 347 |
| MnlI | CCTC | 3 cut(s) | 3, 115, 357 |
| MseI | TTAA | 1 cut(s) | 84 |
| MspI | CCGG | 2 cut(s) | 192, 213 |
| MspR9I | CCNGG | 2 cut(s) | 150, 367 |
| MvaI | CCWGG | 2 cut(s) | 150, 367 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 274 |
| NdeII | GATC | 3 cut(s) | 132, 174, 217 |
| NlaIII | CATG | 3 cut(s) | 209, 245, 272 |
| NlaIV | GGNNCC | 2 cut(s) | 163, 345 |
| PagI | TCATGA | 2 cut(s) | 205, 241 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PfeI | GAWTC | 2 cut(s) | 90, 222 |
| PkrI | GCNGC | 2 cut(s) | 54, 267 |
| PleI | GAGTC | 1 cut(s) | 346 |
| PpsI | GAGTC | 1 cut(s) | 346 |
| PsiI | TTATAA | 1 cut(s) | 75 |
| Psp6I | CCWGG | 2 cut(s) | 148, 365 |
| PspGI | CCWGG | 2 cut(s) | 148, 365 |
| PspN4I | GGNNCC | 2 cut(s) | 163, 345 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| RsaI | GTAC | 1 cut(s) | 19 |
| RsaNI | GTAC | 1 cut(s) | 18 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 2 cut(s) | 53, 266 |
| Sau3AI | GATC | 3 cut(s) | 132, 174, 217 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 1 cut(s) | 347 |
| ScrFI | CCNGG | 2 cut(s) | 150, 367 |
| SduI | GDGCHC | 1 cut(s) | 164 |
| SetI | ASST | 2 cut(s) | 250, 368 |
| SfaNI | GCATC | 3 cut(s) | 15, 199, 288 |
| SfcI | CTRYAG | 2 cut(s) | 94, 286 |
| SmlI | CTYRAG | 1 cut(s) | 185 |
| SmoI | CTYRAG | 1 cut(s) | 185 |
| Sse9I | AATT | 2 cut(s) | 35, 233 |
| SsiI | CCGC | 3 cut(s) | 105, 142, 273 |
| SspMI | CTAG | 1 cut(s) | 379 |
| StyD4I | CCNGG | 2 cut(s) | 148, 365 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaqI | TCGA | 3 cut(s) | 135, 173, 220 |
| TasI | AATT | 2 cut(s) | 35, 233 |
| TfiI | GAWTC | 2 cut(s) | 90, 222 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseI | GCWGC | 2 cut(s) | 52, 265 |
| TspDTI | ATGAA | 2 cut(s) | 194, 258 |
| TspRI | CASTG | 1 cut(s) | 339 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XspI | CTAG | 1 cut(s) | 379 |