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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 292, 394, 475 |
| AcoI | YGGCCR | 1 cut(s) | 289 |
| AfaI | GTAC | 1 cut(s) | 250 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 110 |
| AgsI | TTSAA | 3 cut(s) | 83, 409, 427 |
| AluBI | AGCT | 3 cut(s) | 286, 418, 443 |
| AluI | AGCT | 3 cut(s) | 286, 418, 443 |
| Alw26I | GTCTC | 2 cut(s) | 357, 501 |
| AoxI | GGCC | 2 cut(s) | 14, 289 |
| ApeKI | GCWGC | 1 cut(s) | 554 |
| AspS9I | GGNCC | 4 cut(s) | 15, 357, 449, 575 |
| AsuC2I | CCSGG | 3 cut(s) | 33, 434, 559 |
| AsuHPI | GGTGA | 1 cut(s) | 424 |
| AvaII | GGWCC | 3 cut(s) | 357, 449, 575 |
| BbsI | GAAGAC | 2 cut(s) | 252, 284 |
| BbvI | GCAGC | 1 cut(s) | 566 |
| BccI | CCATC | 4 cut(s) | 459, 477, 497, 527 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 27, 38, 61, 72, 210, 244 |
| BcnI | CCSGG | 3 cut(s) | 33, 434, 559 |
| BcoDI | GTCTC | 2 cut(s) | 357, 501 |
| BfmI | CTRYAG | 1 cut(s) | 552 |
| BisI | GCNGC | 2 cut(s) | 292, 555 |
| BlsI | GCNGC | 2 cut(s) | 293, 556 |
| Bme1390I | CCNGG | 3 cut(s) | 33, 434, 559 |
| Bme18I | GGWCC | 3 cut(s) | 357, 449, 575 |
| BmgT120I | GGNCC | 4 cut(s) | 15, 357, 449, 575 |
| BmiI | GGNNCC | 1 cut(s) | 450 |
| BmrFI | CCNGG | 3 cut(s) | 33, 434, 559 |
| BmsI | GCATC | 3 cut(s) | 58, 123, 149 |
| BpiI | GAAGAC | 2 cut(s) | 252, 284 |
| Bpu10I | CCTNAGC | 1 cut(s) | 470 |
| BpuEI | CTTGAG | 1 cut(s) | 229 |
| BpuMI | CCSGG | 3 cut(s) | 33, 434, 559 |
| BsaJI | CCNNGG | 3 cut(s) | 56, 432, 578 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 110 |
| Bse3DI | GCAATG | 2 cut(s) | 226, 389 |
| BseDI | CCNNGG | 3 cut(s) | 56, 432, 578 |
| BseGI | GGATG | 2 cut(s) | 340, 488 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BseMI | GCAATG | 2 cut(s) | 226, 389 |
| BseXI | GCAGC | 1 cut(s) | 566 |
| Bsh1285I | CGRYCG | 1 cut(s) | 463 |
| BshFI | GGCC | 2 cut(s) | 16, 291 |
| BsiEI | CGRYCG | 1 cut(s) | 463 |
| BsiSI | CCGG | 3 cut(s) | 32, 434, 559 |
| BslFI | GGGAC | 2 cut(s) | 196, 462 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BsmAI | GTCTC | 2 cut(s) | 357, 501 |
| BsmBI | CGTCTC | 1 cut(s) | 501 |
| BsmFI | GGGAC | 2 cut(s) | 196, 462 |
| BsmI | GAATGC | 2 cut(s) | 38, 433 |
| BsnI | GGCC | 2 cut(s) | 16, 291 |
| Bsp143I | GATC | 1 cut(s) | 264 |
| Bsp19I | CCATGG | 1 cut(s) | 578 |
| BspACI | CCGC | 3 cut(s) | 292, 394, 475 |
| BspANI | GGCC | 2 cut(s) | 16, 291 |
| BspLI | GGNNCC | 1 cut(s) | 450 |
| BspMAI | CTGCAG | 1 cut(s) | 556 |
| BsrDI | GCAATG | 2 cut(s) | 226, 389 |
| BssECI | CCNNGG | 3 cut(s) | 56, 432, 578 |
| BssMI | GATC | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 1 cut(s) | 578 |
| Bst4CI | ACNGT | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 2 cut(s) | 9, 396 |
| BstDEI | CTNAG | 3 cut(s) | 282, 306, 470 |
| BstDSI | CCRYGG | 1 cut(s) | 578 |
| BstF5I | GGATG | 2 cut(s) | 340, 488 |
| BstKTI | GATC | 1 cut(s) | 267 |
| BstMAI | GTCTC | 2 cut(s) | 357, 501 |
| BstMBI | GATC | 1 cut(s) | 264 |
| BstMCI | CGRYCG | 1 cut(s) | 463 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 13, 554, 568 |
| BstNSI | RCATGY | 1 cut(s) | 491 |
| BstSCI | CCNGG | 3 cut(s) | 31, 432, 557 |
| BstSFI | CTRYAG | 1 cut(s) | 552 |
| BstV1I | GCAGC | 1 cut(s) | 566 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 284 |
| BsuRI | GGCC | 2 cut(s) | 16, 291 |
| BtgI | CCRYGG | 1 cut(s) | 578 |
| BtsCI | GGATG | 2 cut(s) | 340, 488 |
| Cac8I | GCNNGC | 2 cut(s) | 9, 396 |
| Cfr13I | GGNCC | 4 cut(s) | 15, 357, 449, 575 |
| Csp6I | GTAC | 1 cut(s) | 249 |
| CviAII | CATG | 3 cut(s) | 488, 572, 579 |
| CviQI | GTAC | 1 cut(s) | 249 |
| DdeI | CTNAG | 3 cut(s) | 282, 306, 470 |
| DpnI | GATC | 1 cut(s) | 266 |
| DpnII | GATC | 1 cut(s) | 264 |
| EaeI | YGGCCR | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 1 cut(s) | 578 |
| Eco47I | GGWCC | 3 cut(s) | 357, 449, 575 |
| EcoO109I | RGGNCCY | 1 cut(s) | 15 |
| EcoT14I | CCWWGG | 1 cut(s) | 578 |
| ErhI | CCWWGG | 1 cut(s) | 578 |
| Esp3I | CGTCTC | 1 cut(s) | 501 |
| FaeI | CATG | 3 cut(s) | 491, 575, 582 |
| FaiI | YATR | 7 cut(s) | 144, 489, 540, 546, 573, 580, 586 |
| FaqI | GGGAC | 2 cut(s) | 196, 462 |
| FatI | CATG | 3 cut(s) | 487, 571, 578 |
| FauI | CCCGC | 2 cut(s) | 387, 468 |
| Fnu4HI | GCNGC | 2 cut(s) | 292, 555 |
| FokI | GGATG | 2 cut(s) | 347, 495 |
| Fsp4HI | GCNGC | 2 cut(s) | 292, 555 |
| GluI | GCNGC | 2 cut(s) | 292, 555 |
| HaeIII | GGCC | 2 cut(s) | 16, 291 |
| HapII | CCGG | 3 cut(s) | 32, 434, 559 |
| Hin1II | CATG | 3 cut(s) | 491, 575, 582 |
| HindIII | AAGCTT | 1 cut(s) | 284 |
| HinfI | GANTC | 1 cut(s) | 381 |
| HpaII | CCGG | 3 cut(s) | 32, 434, 559 |
| HphI | GGTGA | 1 cut(s) | 424 |
| Hpy166II | GTNNAC | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 1 cut(s) | 206 |
| Hpy188III | TCNNGA | 1 cut(s) | 104 |
| Hpy8I | GTNNAC | 1 cut(s) | 218 |
| Hpy99I | CGWCG | 3 cut(s) | 403, 515, 533 |
| HpyAV | CCTTC | 4 cut(s) | 80, 325, 361, 473 |
| HpyCH4III | ACNGT | 1 cut(s) | 453 |
| HpyCH4IV | ACGT | 1 cut(s) | 201 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 326, 554 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 13, 554, 568 |
| HpyF3I | CTNAG | 3 cut(s) | 282, 306, 470 |
| HpySE526I | ACGT | 1 cut(s) | 201 |
| Hsp92II | CATG | 3 cut(s) | 491, 575, 582 |
| Kzo9I | GATC | 1 cut(s) | 264 |
| LmnI | GCTCC | 1 cut(s) | 440 |
| LpnPI | CCDG | 6 cut(s) | 45, 177, 404, 447, 564, 572 |
| Lsp1109I | GCAGC | 1 cut(s) | 566 |
| LweI | GCATC | 3 cut(s) | 58, 123, 149 |
| MaeII | ACGT | 1 cut(s) | 201 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 1 cut(s) | 266 |
| MboI | GATC | 1 cut(s) | 264 |
| MboII | GAAGA | 4 cut(s) | 95, 180, 252, 289 |
| MmeI | TCCRAC | 1 cut(s) | 472 |
| MnlI | CCTC | 6 cut(s) | 6, 66, 202, 215, 253, 331 |
| MseI | TTAA | 1 cut(s) | 20 |
| MslI | CAYNNNNRTG | 2 cut(s) | 570, 583 |
| MspI | CCGG | 3 cut(s) | 32, 434, 559 |
| MspR9I | CCNGG | 3 cut(s) | 33, 434, 559 |
| Mva1269I | GAATGC | 2 cut(s) | 38, 433 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 13, 554, 568 |
| NciI | CCSGG | 3 cut(s) | 33, 434, 559 |
| NcoI | CCATGG | 1 cut(s) | 578 |
| NdeII | GATC | 1 cut(s) | 264 |
| NlaIII | CATG | 3 cut(s) | 491, 575, 582 |
| NlaIV | GGNNCC | 1 cut(s) | 450 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| NspI | RCATGY | 1 cut(s) | 491 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 519, 528 |
| PctI | GAATGC | 2 cut(s) | 38, 433 |
| PfeI | GAWTC | 1 cut(s) | 381 |
| PkrI | GCNGC | 2 cut(s) | 293, 556 |
| PspN4I | GGNNCC | 1 cut(s) | 450 |
| PspPI | GGNCC | 4 cut(s) | 15, 357, 449, 575 |
| PstI | CTGCAG | 1 cut(s) | 556 |
| RsaI | GTAC | 1 cut(s) | 250 |
| RsaNI | GTAC | 1 cut(s) | 249 |
| RseI | CAYNNNNRTG | 2 cut(s) | 570, 583 |
| SaqAI | TTAA | 1 cut(s) | 20 |
| SatI | GCNGC | 2 cut(s) | 292, 555 |
| Sau3AI | GATC | 1 cut(s) | 264 |
| Sau96I | GGNCC | 4 cut(s) | 15, 357, 449, 575 |
| ScrFI | CCNGG | 3 cut(s) | 33, 434, 559 |
| SetI | ASST | 8 cut(s) | 58, 204, 288, 325, 342, 414, 420, 445 |
| SfaNI | GCATC | 3 cut(s) | 58, 123, 149 |
| SfcI | CTRYAG | 1 cut(s) | 552 |
| SinI | GGWCC | 3 cut(s) | 357, 449, 575 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 570, 583 |
| SmlI | CTYRAG | 1 cut(s) | 244 |
| SmoI | CTYRAG | 1 cut(s) | 244 |
| SsiI | CCGC | 3 cut(s) | 292, 394, 475 |
| StyD4I | CCNGG | 3 cut(s) | 31, 432, 557 |
| StyI | CCWWGG | 1 cut(s) | 578 |
| TaaI | ACNGT | 1 cut(s) | 453 |
| TaiI | ACGT | 1 cut(s) | 204 |
| TaqI | TCGA | 3 cut(s) | 52, 263, 373 |
| TaqII | GACCGA | 2 cut(s) | 345, 477 |
| TauI | GCSGC | 1 cut(s) | 294 |
| TfiI | GAWTC | 1 cut(s) | 381 |
| Tru1I | TTAA | 1 cut(s) | 20 |
| Tru9I | TTAA | 1 cut(s) | 20 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| TseI | GCWGC | 1 cut(s) | 554 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| VpaK11BI | GGWCC | 3 cut(s) | 357, 449, 575 |
| XceI | RCATGY | 1 cut(s) | 491 |