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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 124 |
| AbsI | CCTCGAGG | 1 cut(s) | 19 |
| AccB1I | GGYRCC | 1 cut(s) | 164 |
| AccBSI | CCGCTC | 1 cut(s) | 313 |
| AccII | CGCG | 1 cut(s) | 95 |
| AciI | CCGC | 6 cut(s) | 5, 29, 83, 86, 282, 311 |
| AcyI | GRCGYC | 2 cut(s) | 121, 250 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AgsI | TTSAA | 1 cut(s) | 298 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 125 |
| AjnI | CCWGG | 1 cut(s) | 160 |
| AluBI | AGCT | 2 cut(s) | 35, 173 |
| AluI | AGCT | 2 cut(s) | 35, 173 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| Alw26I | GTCTC | 2 cut(s) | 194, 206 |
| Ama87I | CYCGRG | 1 cut(s) | 19 |
| AoxI | GGCC | 3 cut(s) | 15, 154, 283 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| AspS9I | GGNCC | 2 cut(s) | 127, 284 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 233 |
| AvaI | CYCGRG | 1 cut(s) | 19 |
| AvaII | GGWCC | 1 cut(s) | 127 |
| BanI | GGYRCC | 1 cut(s) | 164 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BbvI | GCAGC | 1 cut(s) | 160 |
| BciT130I | CCWGG | 1 cut(s) | 162 |
| BcoDI | GTCTC | 2 cut(s) | 194, 206 |
| BfaI | CTAG | 1 cut(s) | 170 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 162 |
| BisI | GCNGC | 5 cut(s) | 84, 87, 174, 283, 311 |
| BlsI | GCNGC | 5 cut(s) | 85, 88, 175, 284, 312 |
| Bme1390I | CCNGG | 1 cut(s) | 162 |
| Bme18I | GGWCC | 1 cut(s) | 127 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 125 |
| BmeT110I | CYCGRG | 1 cut(s) | 19 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 284 |
| BmiI | GGNNCC | 2 cut(s) | 166, 245 |
| BmrFI | CCNGG | 1 cut(s) | 162 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BsaHI | GRCGYC | 2 cut(s) | 121, 250 |
| BsaI | GGTCTC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 1 cut(s) | 287 |
| BsaWI | WCCGGW | 1 cut(s) | 240 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| Bse3DI | GCAATG | 1 cut(s) | 277 |
| BseBI | CCWGG | 1 cut(s) | 162 |
| BseDI | CCNNGG | 1 cut(s) | 287 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseMI | GCAATG | 1 cut(s) | 277 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseRI | GAGGAG | 2 cut(s) | 156, 272 |
| BseXI | GCAGC | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 1 cut(s) | 95 |
| BshFI | GGCC | 3 cut(s) | 17, 156, 285 |
| BshNI | GGYRCC | 1 cut(s) | 164 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 19 |
| BsiSI | CCGG | 2 cut(s) | 241, 247 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsmAI | GTCTC | 2 cut(s) | 194, 206 |
| BsmBI | CGTCTC | 1 cut(s) | 206 |
| BsnI | GGCC | 3 cut(s) | 17, 156, 285 |
| Bso31I | GGTCTC | 1 cut(s) | 194 |
| BsoBI | CYCGRG | 1 cut(s) | 19 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| Bsp143I | GATC | 1 cut(s) | 196 |
| Bsp68I | TCGCGA | 1 cut(s) | 95 |
| BspACI | CCGC | 6 cut(s) | 5, 29, 83, 86, 282, 311 |
| BspANI | GGCC | 3 cut(s) | 17, 156, 285 |
| BspCNI | CTCAG | 1 cut(s) | 309 |
| BspFNI | CGCG | 1 cut(s) | 95 |
| BspLI | GGNNCC | 2 cut(s) | 166, 245 |
| BspT107I | GGYRCC | 1 cut(s) | 164 |
| BspTNI | GGTCTC | 1 cut(s) | 194 |
| BsrBI | CCGCTC | 1 cut(s) | 313 |
| BsrDI | GCAATG | 1 cut(s) | 277 |
| BssECI | CCNNGG | 1 cut(s) | 287 |
| BssMI | GATC | 1 cut(s) | 196 |
| BssNI | GRCGYC | 2 cut(s) | 121, 250 |
| Bst2UI | CCWGG | 1 cut(s) | 162 |
| BstACI | GRCGYC | 2 cut(s) | 121, 250 |
| BstDEI | CTNAG | 1 cut(s) | 317 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstFNI | CGCG | 1 cut(s) | 95 |
| BstKTI | GATC | 1 cut(s) | 199 |
| BstMAI | GTCTC | 2 cut(s) | 194, 206 |
| BstMBI | GATC | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 162, 212 |
| BstNI | CCWGG | 1 cut(s) | 162 |
| BstSCI | CCNGG | 1 cut(s) | 160 |
| BstUI | CGCG | 1 cut(s) | 95 |
| BstV1I | GCAGC | 1 cut(s) | 160 |
| BsuRI | GGCC | 3 cut(s) | 17, 156, 285 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsI | GCAGTG | 2 cut(s) | 63, 222 |
| BtsIMutI | CAGTG | 2 cut(s) | 63, 222 |
| BtuMI | TCGCGA | 1 cut(s) | 95 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 284 |
| CseI | GACGC | 1 cut(s) | 239 |
| CviAII | CATG | 1 cut(s) | 13 |
| CviJI | RGCY | 6 cut(s) | 17, 35, 89, 156, 173, 285 |
| CviKI_1 | RGCY | 6 cut(s) | 17, 35, 89, 156, 173, 285 |
| DdeI | CTNAG | 1 cut(s) | 317 |
| DpnI | GATC | 1 cut(s) | 198 |
| DpnII | GATC | 1 cut(s) | 196 |
| DriI | GACNNNNNGTC | 1 cut(s) | 125 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 125 |
| EciI | GGCGGA | 2 cut(s) | 20, 44 |
| Eco31I | GGTCTC | 1 cut(s) | 194 |
| Eco47I | GGWCC | 1 cut(s) | 127 |
| Eco88I | CYCGRG | 1 cut(s) | 19 |
| EcoRII | CCWGG | 1 cut(s) | 160 |
| Esp3I | CGTCTC | 1 cut(s) | 206 |
| FaeI | CATG | 1 cut(s) | 16 |
| FaiI | YATR | 1 cut(s) | 14 |
| FatI | CATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 5 cut(s) | 84, 87, 174, 283, 311 |
| Fsp4HI | GCNGC | 5 cut(s) | 84, 87, 174, 283, 311 |
| FspBI | CTAG | 1 cut(s) | 170 |
| GluI | GCNGC | 5 cut(s) | 84, 87, 174, 283, 311 |
| HaeIII | GGCC | 3 cut(s) | 17, 156, 285 |
| HapII | CCGG | 2 cut(s) | 241, 247 |
| HgaI | GACGC | 1 cut(s) | 239 |
| Hin1I | GRCGYC | 2 cut(s) | 121, 250 |
| Hin1II | CATG | 1 cut(s) | 16 |
| HinfI | GANTC | 1 cut(s) | 271 |
| HpaII | CCGG | 2 cut(s) | 241, 247 |
| HphI | GGTGA | 2 cut(s) | 83, 233 |
| Hpy188III | TCNNGA | 4 cut(s) | 94, 191, 254, 316 |
| Hpy99I | CGWCG | 1 cut(s) | 255 |
| HpyAV | CCTTC | 3 cut(s) | 91, 167, 218 |
| HpyCH4IV | ACGT | 1 cut(s) | 121 |
| HpyCH4V | TGCA | 1 cut(s) | 56 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 162, 212 |
| HpyF3I | CTNAG | 1 cut(s) | 317 |
| HpySE526I | ACGT | 1 cut(s) | 121 |
| Hsp92I | GRCGYC | 2 cut(s) | 121, 250 |
| Hsp92II | CATG | 1 cut(s) | 16 |
| Kzo9I | GATC | 1 cut(s) | 196 |
| LmnI | GCTCC | 2 cut(s) | 100, 318 |
| LpnPI | CCDG | 6 cut(s) | 23, 110, 147, 174, 254, 260 |
| Lsp1109I | GCAGC | 1 cut(s) | 160 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 1 cut(s) | 170 |
| MaeII | ACGT | 1 cut(s) | 121 |
| MalI | GATC | 1 cut(s) | 198 |
| MbiI | CCGCTC | 1 cut(s) | 313 |
| MboI | GATC | 1 cut(s) | 196 |
| MboII | GAAGA | 2 cut(s) | 62, 266 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 7 cut(s) | 15, 28, 67, 134, 221, 250, 253 |
| MspI | CCGG | 2 cut(s) | 241, 247 |
| MspR9I | CCNGG | 1 cut(s) | 162 |
| MvaI | CCWGG | 1 cut(s) | 162 |
| MvnI | CGCG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 162, 212 |
| NdeII | GATC | 1 cut(s) | 196 |
| NlaIII | CATG | 1 cut(s) | 16 |
| NlaIV | GGNNCC | 2 cut(s) | 166, 245 |
| NmeAIII | GCCGAG | 1 cut(s) | 191 |
| NruI | TCGCGA | 1 cut(s) | 95 |
| PaeR7I | CTCGAG | 1 cut(s) | 19 |
| PfeI | GAWTC | 1 cut(s) | 271 |
| PkrI | GCNGC | 5 cut(s) | 85, 88, 175, 284, 312 |
| Psp6I | CCWGG | 1 cut(s) | 160 |
| PspGI | CCWGG | 1 cut(s) | 160 |
| PspN4I | GGNNCC | 2 cut(s) | 166, 245 |
| PspPI | GGNCC | 2 cut(s) | 127, 284 |
| PspXI | VCTCGAGB | 1 cut(s) | 19 |
| RruI | TCGCGA | 1 cut(s) | 95 |
| SatI | GCNGC | 5 cut(s) | 84, 87, 174, 283, 311 |
| Sau3AI | GATC | 1 cut(s) | 196 |
| Sau96I | GGNCC | 2 cut(s) | 127, 284 |
| ScrFI | CCNGG | 1 cut(s) | 162 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SetI | ASST | 5 cut(s) | 26, 37, 78, 124, 175 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| Sfr274I | CTCGAG | 1 cut(s) | 19 |
| SinI | GGWCC | 1 cut(s) | 127 |
| SlaI | CTCGAG | 1 cut(s) | 19 |
| SmlI | CTYRAG | 1 cut(s) | 19 |
| SmoI | CTYRAG | 1 cut(s) | 19 |
| SsiI | CCGC | 6 cut(s) | 5, 29, 83, 86, 282, 311 |
| SspMI | CTAG | 1 cut(s) | 170 |
| StyD4I | CCNGG | 1 cut(s) | 160 |
| TaiI | ACGT | 1 cut(s) | 124 |
| TaqI | TCGA | 3 cut(s) | 20, 192, 253 |
| TauI | GCSGC | 4 cut(s) | 86, 89, 285, 313 |
| TfiI | GAWTC | 1 cut(s) | 271 |
| TscAI | CASTG | 2 cut(s) | 63, 222 |
| TseI | GCWGC | 1 cut(s) | 173 |
| TspDTI | ATGAA | 1 cut(s) | 266 |
| TspGWI | ACGGA | 1 cut(s) | 62 |
| TspRI | CASTG | 2 cut(s) | 63, 222 |
| VpaK11BI | GGWCC | 1 cut(s) | 127 |
| XhoI | CTCGAG | 1 cut(s) | 19 |
| XspI | CTAG | 1 cut(s) | 170 |
| ZraI | GACGTC | 1 cut(s) | 122 |