Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 412 |
| Acc65I | GGTACC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 2 cut(s) | 158, 340 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 174 |
| AccBSI | CCGCTC | 1 cut(s) | 464 |
| AciI | CCGC | 5 cut(s) | 118, 462, 615, 689, 742 |
| AclI | AACGTT | 1 cut(s) | 140 |
| AclWI | GGATC | 3 cut(s) | 433, 449, 462 |
| AcsI | RAATTY | 3 cut(s) | 522, 545, 675 |
| AcyI | GRCGYC | 1 cut(s) | 431 |
| AfaI | GTAC | 1 cut(s) | 160 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AflIII | ACRYGT | 1 cut(s) | 38 |
| AgsI | TTSAA | 3 cut(s) | 154, 349, 545 |
| AjiI | CACGTC | 1 cut(s) | 10 |
| AjnI | CCWGG | 2 cut(s) | 275, 362 |
| Alw21I | GWGCWC | 1 cut(s) | 447 |
| AlwI | GGATC | 3 cut(s) | 433, 449, 462 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 80 |
| AoxI | GGCC | 1 cut(s) | 319 |
| ApeKI | GCWGC | 2 cut(s) | 80, 83 |
| ApoI | RAATTY | 3 cut(s) | 522, 545, 675 |
| Asp718I | GGTACC | 1 cut(s) | 158 |
| AspA2I | CCTAGG | 1 cut(s) | 637 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AsuC2I | CCSGG | 2 cut(s) | 147, 435 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| AvrII | CCTAGG | 1 cut(s) | 637 |
| BamHI | GGATCC | 1 cut(s) | 454 |
| BanI | GGYRCC | 2 cut(s) | 158, 340 |
| BanII | GRGCYC | 1 cut(s) | 195 |
| Bbv12I | GWGCWC | 1 cut(s) | 447 |
| BbvI | GCAGC | 2 cut(s) | 67, 70 |
| BccI | CCATC | 3 cut(s) | 7, 89, 349 |
| BceAI | ACGGC | 4 cut(s) | 45, 334, 423, 714 |
| BciT130I | CCWGG | 2 cut(s) | 277, 364 |
| BcnI | CCSGG | 2 cut(s) | 147, 435 |
| BfaI | CTAG | 1 cut(s) | 638 |
| BisI | GCNGC | 3 cut(s) | 81, 84, 742 |
| BlnI | CCTAGG | 1 cut(s) | 637 |
| BlsI | GCNGC | 3 cut(s) | 82, 85, 743 |
| Bme1390I | CCNGG | 4 cut(s) | 147, 277, 364, 435 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmgBI | CACGTC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmiI | GGNNCC | 6 cut(s) | 129, 160, 273, 274, 342, 456 |
| BmrFI | CCNGG | 4 cut(s) | 147, 277, 364, 435 |
| BmsI | GCATC | 3 cut(s) | 196, 622, 642 |
| BpmI | CTGGAG | 1 cut(s) | 537 |
| BpuMI | CCSGG | 2 cut(s) | 147, 435 |
| BsaHI | GRCGYC | 1 cut(s) | 431 |
| BsaJI | CCNNGG | 4 cut(s) | 275, 363, 417, 637 |
| BsaWI | WCCGGW | 1 cut(s) | 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| Bse118I | RCCGGY | 1 cut(s) | 691 |
| Bse1I | ACTGG | 4 cut(s) | 60, 229, 329, 554 |
| BseBI | CCWGG | 2 cut(s) | 277, 364 |
| BseDI | CCNNGG | 4 cut(s) | 275, 363, 417, 637 |
| BseGI | GGATG | 2 cut(s) | 100, 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseMII | CTCAG | 2 cut(s) | 314, 386 |
| BseNI | ACTGG | 4 cut(s) | 60, 229, 329, 554 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 2 cut(s) | 67, 70 |
| BshFI | GGCC | 1 cut(s) | 321 |
| BshNI | GGYRCC | 2 cut(s) | 158, 340 |
| BsiHKAI | GWGCWC | 1 cut(s) | 447 |
| BsiSI | CCGG | 4 cut(s) | 146, 435, 448, 692 |
| BslFI | GGGAC | 2 cut(s) | 285, 393 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsmFI | GGGAC | 2 cut(s) | 285, 393 |
| BsnI | GGCC | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 2 cut(s) | 195, 447 |
| Bsp143I | GATC | 3 cut(s) | 214, 425, 454 |
| Bsp19I | CCATGG | 1 cut(s) | 417 |
| BspACI | CCGC | 5 cut(s) | 118, 462, 615, 689, 742 |
| BspANI | GGCC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 2 cut(s) | 315, 387 |
| BspHI | TCATGA | 2 cut(s) | 22, 628 |
| BspLI | GGNNCC | 6 cut(s) | 129, 160, 273, 274, 342, 456 |
| BspPI | GGATC | 3 cut(s) | 433, 449, 462 |
| BspT107I | GGYRCC | 2 cut(s) | 158, 340 |
| BsrBI | CCGCTC | 1 cut(s) | 464 |
| BsrFI | RCCGGY | 1 cut(s) | 691 |
| BsrI | ACTGG | 4 cut(s) | 60, 229, 329, 554 |
| BssAI | RCCGGY | 1 cut(s) | 691 |
| BssECI | CCNNGG | 4 cut(s) | 275, 363, 417, 637 |
| BssMI | GATC | 3 cut(s) | 214, 425, 454 |
| BssNI | GRCGYC | 1 cut(s) | 431 |
| BssT1I | CCWWGG | 2 cut(s) | 417, 637 |
| Bst2UI | CCWGG | 2 cut(s) | 277, 364 |
| BstACI | GRCGYC | 1 cut(s) | 431 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 80 |
| BstC8I | GCNNGC | 2 cut(s) | 693, 709 |
| BstDEI | CTNAG | 2 cut(s) | 323, 395 |
| BstDSI | CCRYGG | 1 cut(s) | 417 |
| BstF5I | GGATG | 2 cut(s) | 100, 211 |
| BstKTI | GATC | 3 cut(s) | 217, 428, 457 |
| BstMBI | GATC | 3 cut(s) | 214, 425, 454 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 80 |
| BstNI | CCWGG | 2 cut(s) | 277, 364 |
| BstNSI | RCATGY | 1 cut(s) | 42 |
| BstSCI | CCNGG | 4 cut(s) | 145, 275, 362, 433 |
| BstV1I | GCAGC | 2 cut(s) | 67, 70 |
| BstX2I | RGATCY | 1 cut(s) | 454 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 321 |
| BtgI | CCRYGG | 1 cut(s) | 417 |
| BtrI | CACGTC | 1 cut(s) | 10 |
| BtsCI | GGATG | 2 cut(s) | 100, 211 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 336 |
| Cac8I | GCNNGC | 2 cut(s) | 693, 709 |
| CaiI | CAGNNNCTG | 1 cut(s) | 80 |
| CciI | TCATGA | 2 cut(s) | 22, 628 |
| Cfr10I | RCCGGY | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| CseI | GACGC | 1 cut(s) | 439 |
| Csp6I | GTAC | 1 cut(s) | 159 |
| CviAII | CATG | 7 cut(s) | 23, 39, 266, 295, 352, 418, 629 |
| CviJI | RGCY | 8 cut(s) | 80, 193, 245, 321, 600, 683, 707, 711 |
| CviKI_1 | RGCY | 8 cut(s) | 80, 193, 245, 321, 600, 683, 707, 711 |
| CviQI | GTAC | 1 cut(s) | 159 |
| DdeI | CTNAG | 2 cut(s) | 323, 395 |
| DpnI | GATC | 3 cut(s) | 216, 427, 456 |
| DpnII | GATC | 3 cut(s) | 214, 425, 454 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 412 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 412 |
| Eco130I | CCWWGG | 2 cut(s) | 417, 637 |
| Eco24I | GRGCYC | 1 cut(s) | 195 |
| Eco32I | GATATC | 1 cut(s) | 511 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRI | GAATTC | 2 cut(s) | 522, 545 |
| EcoRII | CCWGG | 2 cut(s) | 275, 362 |
| EcoRV | GATATC | 1 cut(s) | 511 |
| EcoT14I | CCWWGG | 2 cut(s) | 417, 637 |
| EcoT38I | GRGCYC | 1 cut(s) | 195 |
| ErhI | CCWWGG | 2 cut(s) | 417, 637 |
| FaeI | CATG | 7 cut(s) | 26, 42, 269, 298, 355, 421, 632 |
| FaqI | GGGAC | 2 cut(s) | 285, 393 |
| FatI | CATG | 7 cut(s) | 22, 38, 265, 294, 351, 417, 628 |
| FauI | CCCGC | 1 cut(s) | 608 |
| Fnu4HI | GCNGC | 3 cut(s) | 81, 84, 742 |
| FokI | GGATG | 2 cut(s) | 107, 218 |
| FriOI | GRGCYC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 3 cut(s) | 81, 84, 742 |
| FspBI | CTAG | 1 cut(s) | 638 |
| GluI | GCNGC | 3 cut(s) | 81, 84, 742 |
| GsuI | CTGGAG | 1 cut(s) | 537 |
| HaeIII | GGCC | 1 cut(s) | 321 |
| HapII | CCGG | 4 cut(s) | 146, 435, 448, 692 |
| HgaI | GACGC | 1 cut(s) | 439 |
| Hin1I | GRCGYC | 1 cut(s) | 431 |
| Hin1II | CATG | 7 cut(s) | 26, 42, 269, 298, 355, 421, 632 |
| HincII | GTYRAC | 1 cut(s) | 36 |
| HindII | GTYRAC | 1 cut(s) | 36 |
| HinfI | GANTC | 3 cut(s) | 47, 150, 325 |
| HpaII | CCGG | 4 cut(s) | 146, 435, 448, 692 |
| Hpy166II | GTNNAC | 1 cut(s) | 36 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 396 |
| Hpy188III | TCNNGA | 7 cut(s) | 23, 92, 203, 235, 532, 608, 629 |
| Hpy8I | GTNNAC | 1 cut(s) | 36 |
| Hpy99I | CGWCG | 3 cut(s) | 433, 519, 700 |
| HpyAV | CCTTC | 4 cut(s) | 11, 432, 529, 661 |
| HpyCH4IV | ACGT | 2 cut(s) | 9, 140 |
| HpyCH4V | TGCA | 2 cut(s) | 209, 371 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 2 cut(s) | 323, 395 |
| HpySE526I | ACGT | 2 cut(s) | 9, 140 |
| Hsp92I | GRCGYC | 1 cut(s) | 431 |
| Hsp92II | CATG | 7 cut(s) | 26, 42, 269, 298, 355, 421, 632 |
| KflI | GGGWCCC | 1 cut(s) | 272 |
| KpnI | GGTACC | 1 cut(s) | 162 |
| KroI | GCCGGC | 1 cut(s) | 691 |
| KroNI | GCCGGC | 1 cut(s) | 693 |
| Kzo9I | GATC | 3 cut(s) | 214, 425, 454 |
| LmnI | GCTCC | 1 cut(s) | 450 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 70 |
| LweI | GCATC | 3 cut(s) | 196, 622, 642 |
| MaeI | CTAG | 1 cut(s) | 638 |
| MaeII | ACGT | 2 cut(s) | 9, 140 |
| MaeIII | GTNAC | 1 cut(s) | 51 |
| MalI | GATC | 3 cut(s) | 216, 427, 456 |
| MbiI | CCGCTC | 1 cut(s) | 464 |
| MboI | GATC | 3 cut(s) | 214, 425, 454 |
| MfeI | CAATTG | 1 cut(s) | 100 |
| MflI | RGATCY | 1 cut(s) | 454 |
| MhlI | GDGCHC | 2 cut(s) | 195, 447 |
| MluCI | AATT | 5 cut(s) | 100, 492, 522, 545, 675 |
| MlyI | GAGTC | 1 cut(s) | 334 |
| MmeI | TCCRAC | 2 cut(s) | 105, 432 |
| MnlI | CCTC | 4 cut(s) | 235, 328, 331, 664 |
| MreI | CGCCGGCG | 1 cut(s) | 691 |
| MroNI | GCCGGC | 1 cut(s) | 691 |
| MseI | TTAA | 3 cut(s) | 375, 495, 660 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| MspI | CCGG | 4 cut(s) | 146, 435, 448, 692 |
| MspR9I | CCNGG | 4 cut(s) | 147, 277, 364, 435 |
| MunI | CAATTG | 1 cut(s) | 100 |
| MvaI | CCWGG | 2 cut(s) | 277, 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 80 |
| NaeI | GCCGGC | 1 cut(s) | 693 |
| NciI | CCSGG | 2 cut(s) | 147, 435 |
| NcoI | CCATGG | 1 cut(s) | 417 |
| NdeII | GATC | 3 cut(s) | 214, 425, 454 |
| NgoMIV | GCCGGC | 1 cut(s) | 691 |
| NlaIII | CATG | 7 cut(s) | 26, 42, 269, 298, 355, 421, 632 |
| NlaIV | GGNNCC | 6 cut(s) | 129, 160, 273, 274, 342, 456 |
| NmuCI | GTSAC | 1 cut(s) | 51 |
| NspI | RCATGY | 1 cut(s) | 42 |
| PagI | TCATGA | 2 cut(s) | 22, 628 |
| PciI | ACATGT | 1 cut(s) | 38 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 523 |
| PdiI | GCCGGC | 1 cut(s) | 693 |
| PfeI | GAWTC | 2 cut(s) | 47, 150 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 174 |
| PkrI | GCNGC | 3 cut(s) | 82, 85, 743 |
| PleI | GAGTC | 1 cut(s) | 333 |
| PpsI | GAGTC | 1 cut(s) | 333 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| PscI | ACATGT | 1 cut(s) | 38 |
| Psp1406I | AACGTT | 1 cut(s) | 140 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 2 cut(s) | 275, 362 |
| PspGI | CCWGG | 2 cut(s) | 275, 362 |
| PspN4I | GGNNCC | 6 cut(s) | 129, 160, 273, 274, 342, 456 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| PstNI | CAGNNNCTG | 1 cut(s) | 80 |
| PsuI | RGATCY | 1 cut(s) | 454 |
| RsaI | GTAC | 1 cut(s) | 160 |
| RsaNI | GTAC | 1 cut(s) | 159 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| SaqAI | TTAA | 3 cut(s) | 375, 495, 660 |
| SatI | GCNGC | 3 cut(s) | 81, 84, 742 |
| Sau3AI | GATC | 3 cut(s) | 214, 425, 454 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| SchI | GAGTC | 1 cut(s) | 334 |
| ScrFI | CCNGG | 4 cut(s) | 147, 277, 364, 435 |
| SduI | GDGCHC | 2 cut(s) | 195, 447 |
| SetI | ASST | 9 cut(s) | 12, 22, 143, 160, 342, 365, 388, 540, 643 |
| SfaNI | GCATC | 3 cut(s) | 196, 622, 642 |
| SgrAI | CRCCGGYG | 1 cut(s) | 691 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| Sse9I | AATT | 5 cut(s) | 100, 492, 522, 545, 675 |
| SsiI | CCGC | 5 cut(s) | 118, 462, 615, 689, 742 |
| SspMI | CTAG | 1 cut(s) | 638 |
| StyD4I | CCNGG | 4 cut(s) | 145, 275, 362, 433 |
| StyI | CCWWGG | 2 cut(s) | 417, 637 |
| TaiI | ACGT | 2 cut(s) | 12, 143 |
| TaqI | TCGA | 3 cut(s) | 234, 286, 428 |
| TasI | AATT | 5 cut(s) | 100, 492, 522, 545, 675 |
| TauI | GCSGC | 1 cut(s) | 744 |
| TfiI | GAWTC | 2 cut(s) | 47, 150 |
| Tru1I | TTAA | 3 cut(s) | 375, 495, 660 |
| Tru9I | TTAA | 3 cut(s) | 375, 495, 660 |
| TscAI | CASTG | 2 cut(s) | 60, 336 |
| TseFI | GTSAC | 1 cut(s) | 51 |
| TseI | GCWGC | 2 cut(s) | 80, 83 |
| Tsp45I | GTSAC | 1 cut(s) | 51 |
| TspDTI | ATGAA | 2 cut(s) | 254, 617 |
| TspGWI | ACGGA | 1 cut(s) | 503 |
| TspRI | CASTG | 2 cut(s) | 60, 336 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 3 cut(s) | 522, 545, 675 |
| XceI | RCATGY | 1 cut(s) | 42 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XmaJI | CCTAGG | 1 cut(s) | 637 |
| XspI | CTAG | 1 cut(s) | 638 |