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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 284 |
| AccB1I | GGYRCC | 1 cut(s) | 168 |
| AccI | GTMKAC | 1 cut(s) | 362 |
| AciI | CCGC | 1 cut(s) | 329 |
| AclWI | GGATC | 2 cut(s) | 51, 385 |
| AcyI | GRCGYC | 1 cut(s) | 169 |
| AfaI | GTAC | 1 cut(s) | 62 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 295 |
| AflII | CTTAAG | 1 cut(s) | 173 |
| AgsI | TTSAA | 2 cut(s) | 95, 293 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| AluBI | AGCT | 1 cut(s) | 254 |
| AluI | AGCT | 1 cut(s) | 254 |
| Alw26I | GTCTC | 2 cut(s) | 109, 335 |
| AlwI | GGATC | 2 cut(s) | 51, 385 |
| AoxI | GGCC | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 171, 337 |
| AspS9I | GGNCC | 2 cut(s) | 5, 302 |
| AsuHPI | GGTGA | 2 cut(s) | 138, 334 |
| AvaII | GGWCC | 1 cut(s) | 302 |
| BanI | GGYRCC | 1 cut(s) | 168 |
| BccI | CCATC | 2 cut(s) | 319, 386 |
| BclI | TGATCA | 1 cut(s) | 265 |
| BcoDI | GTCTC | 2 cut(s) | 109, 335 |
| BfoI | RGCGCY | 1 cut(s) | 172 |
| BfrI | CTTAAG | 1 cut(s) | 173 |
| BmcAI | AGTACT | 1 cut(s) | 62 |
| Bme18I | GGWCC | 1 cut(s) | 302 |
| BmgT120I | GGNCC | 2 cut(s) | 5, 302 |
| BmiI | GGNNCC | 2 cut(s) | 6, 170 |
| BpuEI | CTTGAG | 2 cut(s) | 107, 333 |
| BsaAI | YACGTR | 1 cut(s) | 230 |
| BsaHI | GRCGYC | 1 cut(s) | 169 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 295 |
| Bse1I | ACTGG | 1 cut(s) | 8 |
| BseGI | GGATG | 1 cut(s) | 141 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 295 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 8 |
| BshFI | GGCC | 1 cut(s) | 7 |
| BshNI | GGYRCC | 1 cut(s) | 168 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 295 |
| BsmAI | GTCTC | 2 cut(s) | 109, 335 |
| BsnI | GGCC | 1 cut(s) | 7 |
| Bsp143I | GATC | 3 cut(s) | 43, 265, 377 |
| BspACI | CCGC | 1 cut(s) | 329 |
| BspANI | GGCC | 1 cut(s) | 7 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspLI | GGNNCC | 2 cut(s) | 6, 170 |
| BspPI | GGATC | 2 cut(s) | 51, 385 |
| BspT107I | GGYRCC | 1 cut(s) | 168 |
| BspTI | CTTAAG | 1 cut(s) | 173 |
| BsrI | ACTGG | 1 cut(s) | 8 |
| BssMI | GATC | 3 cut(s) | 43, 265, 377 |
| BssNI | GRCGYC | 1 cut(s) | 169 |
| BstACI | GRCGYC | 1 cut(s) | 169 |
| BstAFI | CTTAAG | 1 cut(s) | 173 |
| BstBAI | YACGTR | 1 cut(s) | 230 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 1 cut(s) | 141 |
| BstH2I | RGCGCY | 1 cut(s) | 172 |
| BstHHI | GCGC | 2 cut(s) | 171, 337 |
| BstKTI | GATC | 3 cut(s) | 46, 268, 380 |
| BstMAI | GTCTC | 2 cut(s) | 109, 335 |
| BstMBI | GATC | 3 cut(s) | 43, 265, 377 |
| BstSNI | TACGTA | 1 cut(s) | 230 |
| BsuRI | GGCC | 1 cut(s) | 7 |
| BtsCI | GGATG | 1 cut(s) | 141 |
| BtsIMutI | CAGTG | 1 cut(s) | 15 |
| CfoI | GCGC | 2 cut(s) | 171, 337 |
| Cfr13I | GGNCC | 2 cut(s) | 5, 302 |
| Csp6I | GTAC | 1 cut(s) | 61 |
| CviAII | CATG | 1 cut(s) | 338 |
| CviJI | RGCY | 4 cut(s) | 7, 68, 254, 396 |
| CviKI_1 | RGCY | 4 cut(s) | 7, 68, 254, 396 |
| CviQI | GTAC | 1 cut(s) | 61 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| DinI | GGCGCC | 1 cut(s) | 170 |
| DpnI | GATC | 3 cut(s) | 45, 267, 379 |
| DpnII | GATC | 3 cut(s) | 43, 265, 377 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 284 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 284 |
| Eco105I | TACGTA | 1 cut(s) | 230 |
| Eco47I | GGWCC | 1 cut(s) | 302 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 293 |
| EgeI | GGCGCC | 1 cut(s) | 170 |
| EheI | GGCGCC | 1 cut(s) | 170 |
| FaeI | CATG | 1 cut(s) | 341 |
| FaiI | YATR | 3 cut(s) | 227, 237, 339 |
| FatI | CATG | 1 cut(s) | 337 |
| FauI | CCCGC | 1 cut(s) | 322 |
| FbaI | TGATCA | 1 cut(s) | 265 |
| FblI | GTMKAC | 1 cut(s) | 362 |
| FokI | GGATG | 1 cut(s) | 148 |
| GlaI | GCGC | 2 cut(s) | 170, 336 |
| HaeII | RGCGCY | 1 cut(s) | 172 |
| HaeIII | GGCC | 1 cut(s) | 7 |
| HhaI | GCGC | 2 cut(s) | 171, 337 |
| Hin1I | GRCGYC | 1 cut(s) | 169 |
| Hin1II | CATG | 1 cut(s) | 341 |
| Hin6I | GCGC | 2 cut(s) | 169, 335 |
| HinP1I | GCGC | 2 cut(s) | 169, 335 |
| HindIII | AAGCTT | 1 cut(s) | 252 |
| HinfI | GANTC | 4 cut(s) | 77, 112, 281, 359 |
| HphI | GGTGA | 2 cut(s) | 138, 334 |
| Hpy166II | GTNNAC | 2 cut(s) | 305, 363 |
| Hpy188III | TCNNGA | 1 cut(s) | 74 |
| Hpy8I | GTNNAC | 2 cut(s) | 305, 363 |
| HpyAV | CCTTC | 1 cut(s) | 154 |
| HpyCH4IV | ACGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 1 cut(s) | 118 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| HpySE526I | ACGT | 1 cut(s) | 229 |
| Hsp92I | GRCGYC | 1 cut(s) | 169 |
| Hsp92II | CATG | 1 cut(s) | 341 |
| HspAI | GCGC | 2 cut(s) | 169, 335 |
| KasI | GGCGCC | 1 cut(s) | 168 |
| Ksp22I | TGATCA | 1 cut(s) | 265 |
| Kzo9I | GATC | 3 cut(s) | 43, 265, 377 |
| LmnI | GCTCC | 1 cut(s) | 180 |
| LpnPI | CCDG | 5 cut(s) | 21, 87, 162, 230, 293 |
| MaeII | ACGT | 1 cut(s) | 229 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 3 cut(s) | 45, 267, 379 |
| MboI | GATC | 3 cut(s) | 43, 265, 377 |
| MboII | GAAGA | 3 cut(s) | 107, 166, 169 |
| MluCI | AATT | 1 cut(s) | 222 |
| Mly113I | GGCGCC | 1 cut(s) | 169 |
| MlyI | GAGTC | 2 cut(s) | 290, 368 |
| MmeI | TCCRAC | 2 cut(s) | 21, 336 |
| MnlI | CCTC | 3 cut(s) | 9, 199, 367 |
| MseI | TTAA | 2 cut(s) | 174, 421 |
| MslI | CAYNNNNRTG | 1 cut(s) | 126 |
| MspCI | CTTAAG | 1 cut(s) | 173 |
| NarI | GGCGCC | 1 cut(s) | 169 |
| NdeII | GATC | 3 cut(s) | 43, 265, 377 |
| NlaIII | CATG | 1 cut(s) | 341 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 170 |
| PfeI | GAWTC | 2 cut(s) | 77, 112 |
| PleI | GAGTC | 2 cut(s) | 289, 367 |
| PluTI | GGCGCC | 1 cut(s) | 172 |
| PpsI | GAGTC | 2 cut(s) | 289, 367 |
| Ppu21I | YACGTR | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 170 |
| PspPI | GGNCC | 2 cut(s) | 5, 302 |
| RsaI | GTAC | 1 cut(s) | 62 |
| RsaNI | GTAC | 1 cut(s) | 61 |
| RseI | CAYNNNNRTG | 1 cut(s) | 126 |
| SaqAI | TTAA | 2 cut(s) | 174, 421 |
| Sau3AI | GATC | 3 cut(s) | 43, 265, 377 |
| Sau96I | GGNCC | 2 cut(s) | 5, 302 |
| ScaI | AGTACT | 1 cut(s) | 62 |
| SchI | GAGTC | 2 cut(s) | 290, 368 |
| SetI | ASST | 7 cut(s) | 30, 165, 232, 256, 276, 300, 312 |
| SfoI | GGCGCC | 1 cut(s) | 170 |
| SinI | GGWCC | 1 cut(s) | 302 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 126 |
| SmlI | CTYRAG | 3 cut(s) | 86, 173, 348 |
| SmoI | CTYRAG | 3 cut(s) | 86, 173, 348 |
| SnaBI | TACGTA | 1 cut(s) | 230 |
| Sse9I | AATT | 1 cut(s) | 222 |
| SsiI | CCGC | 1 cut(s) | 329 |
| SspDI | GGCGCC | 1 cut(s) | 168 |
| SspI | AATATT | 1 cut(s) | 412 |
| TaiI | ACGT | 1 cut(s) | 232 |
| TasI | AATT | 1 cut(s) | 222 |
| TatI | WGTACW | 1 cut(s) | 60 |
| TfiI | GAWTC | 2 cut(s) | 77, 112 |
| Tru1I | TTAA | 2 cut(s) | 174, 421 |
| Tru9I | TTAA | 2 cut(s) | 174, 421 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TspRI | CASTG | 1 cut(s) | 15 |
| Vha464I | CTTAAG | 1 cut(s) | 173 |
| VpaK11BI | GGWCC | 1 cut(s) | 302 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 293 |
| XmiI | GTMKAC | 1 cut(s) | 362 |
| ZrmI | AGTACT | 1 cut(s) | 62 |