Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 2 cut(s) | 127, 158 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 174 |
| AccBSI | CCGCTC | 2 cut(s) | 217, 690 |
| AciI | CCGC | 7 cut(s) | 81, 217, 397, 433, 614, 690, 799 |
| AclWI | GGATC | 3 cut(s) | 102, 438, 727 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AfaI | GTAC | 3 cut(s) | 107, 160, 646 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 137, 174, 776 |
| AgsI | TTSAA | 6 cut(s) | 37, 154, 203, 230, 349, 461 |
| AjnI | CCWGG | 1 cut(s) | 446 |
| AluBI | AGCT | 2 cut(s) | 487, 592 |
| AluI | AGCT | 2 cut(s) | 487, 592 |
| Alw26I | GTCTC | 4 cut(s) | 303, 329, 353, 707 |
| AlwI | GGATC | 3 cut(s) | 102, 438, 727 |
| Ama87I | CYCGRG | 2 cut(s) | 11, 65 |
| AoxI | GGCC | 5 cut(s) | 3, 7, 60, 78, 190 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 328, 360 |
| Asp718I | GGTACC | 1 cut(s) | 158 |
| AspS9I | GGNCC | 5 cut(s) | 61, 78, 272, 783, 801 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 224 |
| AvaI | CYCGRG | 2 cut(s) | 11, 65 |
| AvaII | GGWCC | 3 cut(s) | 272, 783, 801 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 636, 669 |
| BanI | GGYRCC | 2 cut(s) | 127, 158 |
| BbsI | GAAGAC | 1 cut(s) | 374 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BccI | CCATC | 5 cut(s) | 170, 311, 349, 547, 661 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 588, 622 |
| BciT130I | CCWGG | 1 cut(s) | 448 |
| BclI | TGATCA | 1 cut(s) | 573 |
| BcoDI | GTCTC | 4 cut(s) | 303, 329, 353, 707 |
| BfaI | CTAG | 2 cut(s) | 299, 771 |
| BisI | GCNGC | 4 cut(s) | 81, 84, 433, 615 |
| BlsI | GCNGC | 4 cut(s) | 82, 85, 434, 616 |
| Bme1390I | CCNGG | 1 cut(s) | 448 |
| Bme18I | GGWCC | 3 cut(s) | 272, 783, 801 |
| BmeT110I | CYCGRG | 2 cut(s) | 11, 65 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 78, 272, 783, 801 |
| BmiI | GGNNCC | 6 cut(s) | 79, 129, 160, 273, 768, 784 |
| BmrFI | CCNGG | 1 cut(s) | 448 |
| BmrI | ACTGGG | 1 cut(s) | 768 |
| BmsI | GCATC | 7 cut(s) | 38, 61, 187, 196, 285, 538, 614 |
| BmuI | ACTGGG | 1 cut(s) | 768 |
| BpiI | GAAGAC | 1 cut(s) | 374 |
| BpmI | CTGGAG | 1 cut(s) | 798 |
| BsaJI | CCNNGG | 3 cut(s) | 64, 275, 804 |
| BsaWI | WCCGGW | 2 cut(s) | 331, 469 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 614, 644, 662, 692 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 137, 174, 776 |
| Bse118I | RCCGGY | 1 cut(s) | 5 |
| Bse1I | ACTGG | 4 cut(s) | 721, 763, 781, 786 |
| BseBI | CCWGG | 1 cut(s) | 448 |
| BseDI | CCNNGG | 3 cut(s) | 64, 275, 804 |
| BseGI | GGATG | 1 cut(s) | 76 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 137, 174, 776 |
| BseMII | CTCAG | 1 cut(s) | 196 |
| BseNI | ACTGG | 4 cut(s) | 721, 763, 781, 786 |
| BseRI | GAGGAG | 1 cut(s) | 602 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| Bsh1285I | CGRYCG | 1 cut(s) | 651 |
| BshFI | GGCC | 5 cut(s) | 5, 9, 62, 80, 192 |
| BshNI | GGYRCC | 2 cut(s) | 127, 158 |
| BsiEI | CGRYCG | 1 cut(s) | 651 |
| BsiHKCI | CYCGRG | 2 cut(s) | 11, 65 |
| BsiSI | CCGG | 4 cut(s) | 6, 332, 436, 470 |
| BslFI | GGGAC | 1 cut(s) | 129 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 137, 174, 776 |
| BsmAI | GTCTC | 4 cut(s) | 303, 329, 353, 707 |
| BsmBI | CGTCTC | 1 cut(s) | 329 |
| BsmFI | GGGAC | 1 cut(s) | 129 |
| BsnI | GGCC | 5 cut(s) | 5, 9, 62, 80, 192 |
| BsoBI | CYCGRG | 2 cut(s) | 11, 65 |
| Bsp143I | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| BspACI | CCGC | 7 cut(s) | 81, 217, 397, 433, 614, 690, 799 |
| BspANI | GGCC | 5 cut(s) | 5, 9, 62, 80, 192 |
| BspCNI | CTCAG | 1 cut(s) | 195 |
| BspLI | GGNNCC | 6 cut(s) | 79, 129, 160, 273, 768, 784 |
| BspPI | GGATC | 3 cut(s) | 102, 438, 727 |
| BspT107I | GGYRCC | 2 cut(s) | 127, 158 |
| BsrBI | CCGCTC | 2 cut(s) | 217, 690 |
| BsrFI | RCCGGY | 1 cut(s) | 5 |
| BsrI | ACTGG | 4 cut(s) | 721, 763, 781, 786 |
| BssAI | RCCGGY | 1 cut(s) | 5 |
| BssECI | CCNNGG | 3 cut(s) | 64, 275, 804 |
| BssMI | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| BssT1I | CCWWGG | 2 cut(s) | 275, 804 |
| Bst2UI | CCWGG | 1 cut(s) | 448 |
| Bst4CI | ACNGT | 3 cut(s) | 340, 640, 649 |
| BstC8I | GCNNGC | 3 cut(s) | 7, 42, 139 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstF5I | GGATG | 1 cut(s) | 76 |
| BstKTI | GATC | 6 cut(s) | 97, 188, 446, 576, 700, 722 |
| BstMAI | GTCTC | 4 cut(s) | 303, 329, 353, 707 |
| BstMBI | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| BstMCI | CGRYCG | 1 cut(s) | 651 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 80, 134, 484, 611 |
| BstNI | CCWGG | 1 cut(s) | 448 |
| BstSCI | CCNGG | 1 cut(s) | 446 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstV2I | GAAGAC | 1 cut(s) | 374 |
| BsuRI | GGCC | 5 cut(s) | 5, 9, 62, 80, 192 |
| BtgZI | GCGATG | 1 cut(s) | 566 |
| BtsCI | GGATG | 1 cut(s) | 76 |
| BtsIMutI | CAGTG | 1 cut(s) | 793 |
| Cac8I | GCNNGC | 3 cut(s) | 7, 42, 139 |
| Cfr10I | RCCGGY | 1 cut(s) | 5 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 78, 272, 783, 801 |
| Csp6I | GTAC | 3 cut(s) | 106, 159, 645 |
| CviAII | CATG | 3 cut(s) | 109, 266, 363 |
| CviQI | GTAC | 3 cut(s) | 106, 159, 645 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 6 cut(s) | 96, 187, 445, 575, 699, 721 |
| DpnII | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 2 cut(s) | 275, 804 |
| Eco147I | AGGCCT | 1 cut(s) | 192 |
| Eco47I | GGWCC | 3 cut(s) | 272, 783, 801 |
| Eco88I | CYCGRG | 2 cut(s) | 11, 65 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| EcoRII | CCWGG | 1 cut(s) | 446 |
| EcoT14I | CCWWGG | 2 cut(s) | 275, 804 |
| EcoT22I | ATGCAT | 1 cut(s) | 267 |
| ErhI | CCWWGG | 2 cut(s) | 275, 804 |
| Esp3I | CGTCTC | 1 cut(s) | 329 |
| FaeI | CATG | 3 cut(s) | 112, 269, 366 |
| FaqI | GGGAC | 1 cut(s) | 129 |
| FatI | CATG | 3 cut(s) | 108, 265, 362 |
| FbaI | TGATCA | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 4 cut(s) | 81, 84, 433, 615 |
| FokI | GGATG | 1 cut(s) | 83 |
| FseI | GGCCGGCC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 4 cut(s) | 81, 84, 433, 615 |
| FspBI | CTAG | 2 cut(s) | 299, 771 |
| GluI | GCNGC | 4 cut(s) | 81, 84, 433, 615 |
| GsuI | CTGGAG | 1 cut(s) | 798 |
| HaeIII | GGCC | 5 cut(s) | 5, 9, 62, 80, 192 |
| HapII | CCGG | 4 cut(s) | 6, 332, 436, 470 |
| Hin1II | CATG | 3 cut(s) | 112, 269, 366 |
| HinfI | GANTC | 5 cut(s) | 47, 52, 439, 677, 733 |
| HpaII | CCGG | 4 cut(s) | 6, 332, 436, 470 |
| HphI | GGTGA | 2 cut(s) | 89, 224 |
| Hpy188I | TCNGA | 4 cut(s) | 185, 682, 697, 730 |
| Hpy188III | TCNNGA | 4 cut(s) | 13, 92, 203, 524 |
| HpyAV | CCTTC | 3 cut(s) | 499, 667, 757 |
| HpyCH4III | ACNGT | 3 cut(s) | 340, 640, 649 |
| HpyCH4V | TGCA | 2 cut(s) | 74, 265 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 80, 134, 484, 611 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| Hsp92II | CATG | 3 cut(s) | 112, 269, 366 |
| KpnI | GGTACC | 1 cut(s) | 162 |
| KroI | GCCGGC | 1 cut(s) | 5 |
| KroNI | GCCGGC | 1 cut(s) | 7 |
| Ksp22I | TGATCA | 1 cut(s) | 573 |
| Kzo9I | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| LmnI | GCTCC | 1 cut(s) | 589 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| LweI | GCATC | 7 cut(s) | 38, 61, 187, 196, 285, 538, 614 |
| MaeI | CTAG | 2 cut(s) | 299, 771 |
| MalI | GATC | 6 cut(s) | 96, 187, 445, 575, 699, 721 |
| MbiI | CCGCTC | 2 cut(s) | 217, 690 |
| MboI | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| MboII | GAAGA | 1 cut(s) | 374 |
| MluCI | AATT | 3 cut(s) | 230, 408, 461 |
| MlyI | GAGTC | 4 cut(s) | 41, 46, 686, 742 |
| MmeI | TCCRAC | 1 cut(s) | 660 |
| MnlI | CCTC | 7 cut(s) | 20, 74, 371, 396, 580, 616, 773 |
| Mph1103I | ATGCAT | 1 cut(s) | 267 |
| MroNI | GCCGGC | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 411, 510 |
| MspI | CCGG | 4 cut(s) | 6, 332, 436, 470 |
| MspR9I | CCNGG | 1 cut(s) | 448 |
| MvaI | CCWGG | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 80, 134, 484, 611 |
| NaeI | GCCGGC | 1 cut(s) | 7 |
| NdeII | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| NgoMIV | GCCGGC | 1 cut(s) | 5 |
| NlaIII | CATG | 3 cut(s) | 112, 269, 366 |
| NlaIV | GGNNCC | 6 cut(s) | 79, 129, 160, 273, 768, 784 |
| NsiI | ATGCAT | 1 cut(s) | 267 |
| PaeR7I | CTCGAG | 1 cut(s) | 11 |
| PceI | AGGCCT | 1 cut(s) | 192 |
| PdiI | GCCGGC | 1 cut(s) | 7 |
| PfeI | GAWTC | 1 cut(s) | 439 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 174 |
| PfoI | TCCNGGA | 1 cut(s) | 446 |
| PkrI | GCNGC | 4 cut(s) | 82, 85, 434, 616 |
| PleI | GAGTC | 4 cut(s) | 41, 46, 685, 741 |
| PpsI | GAGTC | 4 cut(s) | 41, 46, 685, 741 |
| PpuMI | RGGWCCY | 1 cut(s) | 272 |
| Psp5II | RGGWCCY | 1 cut(s) | 272 |
| Psp6I | CCWGG | 1 cut(s) | 446 |
| PspGI | CCWGG | 1 cut(s) | 446 |
| PspN4I | GGNNCC | 6 cut(s) | 79, 129, 160, 273, 768, 784 |
| PspPI | GGNCC | 5 cut(s) | 61, 78, 272, 783, 801 |
| PspPPI | RGGWCCY | 1 cut(s) | 272 |
| RigI | GGCCGGCC | 1 cut(s) | 9 |
| RsaI | GTAC | 3 cut(s) | 107, 160, 646 |
| RsaNI | GTAC | 3 cut(s) | 106, 159, 645 |
| SaqAI | TTAA | 2 cut(s) | 411, 510 |
| SatI | GCNGC | 4 cut(s) | 81, 84, 433, 615 |
| Sau3AI | GATC | 6 cut(s) | 94, 185, 443, 573, 697, 719 |
| Sau96I | GGNCC | 5 cut(s) | 61, 78, 272, 783, 801 |
| SchI | GAGTC | 4 cut(s) | 41, 46, 686, 742 |
| ScrFI | CCNGG | 1 cut(s) | 448 |
| SetI | ASST | 6 cut(s) | 382, 417, 489, 510, 594, 772 |
| SfaNI | GCATC | 7 cut(s) | 38, 61, 187, 196, 285, 538, 614 |
| Sfr274I | CTCGAG | 1 cut(s) | 11 |
| SinI | GGWCC | 3 cut(s) | 272, 783, 801 |
| SlaI | CTCGAG | 1 cut(s) | 11 |
| SmlI | CTYRAG | 1 cut(s) | 11 |
| SmoI | CTYRAG | 1 cut(s) | 11 |
| Sse9I | AATT | 3 cut(s) | 230, 408, 461 |
| SseBI | AGGCCT | 1 cut(s) | 192 |
| SsiI | CCGC | 7 cut(s) | 81, 217, 397, 433, 614, 690, 799 |
| SspI | AATATT | 1 cut(s) | 570 |
| SspMI | CTAG | 2 cut(s) | 299, 771 |
| StuI | AGGCCT | 1 cut(s) | 192 |
| StyD4I | CCNGG | 1 cut(s) | 446 |
| StyI | CCWWGG | 2 cut(s) | 275, 804 |
| TaaI | ACNGT | 3 cut(s) | 340, 640, 649 |
| TaqI | TCGA | 3 cut(s) | 12, 50, 442 |
| TasI | AATT | 3 cut(s) | 230, 408, 461 |
| TauI | GCSGC | 3 cut(s) | 83, 435, 617 |
| TfiI | GAWTC | 1 cut(s) | 439 |
| Tru1I | TTAA | 2 cut(s) | 411, 510 |
| Tru9I | TTAA | 2 cut(s) | 411, 510 |
| TscAI | CASTG | 1 cut(s) | 793 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 1 cut(s) | 484 |
| TspRI | CASTG | 1 cut(s) | 793 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 3 cut(s) | 272, 783, 801 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XhoI | CTCGAG | 1 cut(s) | 11 |
| XspI | CTAG | 2 cut(s) | 299, 771 |
| Zsp2I | ATGCAT | 1 cut(s) | 267 |